avogadro 04726dc5-968c-41bd-982f-3e87bce65de0

request from: baggins
checking if we should skip the build
started at: Tue Feb 17 21:35:37 2015
fetching https://srcbuilder.pld-linux.org/th//srpms/04726dc5-968c-41bd-982f-3e87bce65de0/avogadro-1.0.3-9.src.rpm
fetched 4985286 bytes, 6926.5 K/s
installing srpm: avogadro-1.0.3-9.src.rpm
+ install -d /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/RPMS
+ LC_ALL=en_US.UTF-8
+ rpm -qp --changelog avogadro-1.0.3-9.src.rpm
* Tue Feb 17 2015 PLD Linux Team <feedback@pld-linux.org>
- For complete changelog see: http://git.pld-linux.org/?p=packages/avogadro.git;a=log;h=master

* Sat Oct 25 2014 Jan Rękorajski <baggins@pld-linux.org> 39c1482
- rebuild with boost 1.56.0
- release 9 (by relup.sh)

+ rpm -Uhv --nodeps --define '_topdir /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' avogadro-1.0.3-9.src.rpm
Preparing...                ##################################################
avogadro                    ##################################################
+ rm -f avogadro-1.0.3-9.src.rpm
+ install -m 700 -d /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/tmp
+ TMPDIR=/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/tmp
+ exec nice -n 0 rpmbuild -bp --short-circuit --nodeps --define '_topdir /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target i486-pld-linux --define 'prep exit 0' /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/avogadro.spec
Building target platforms: i486-pld-linux
checking BuildConflict-ing packages
no BuildConflicts found
checking BR
rpm: Building target platforms: i486-pld-linux
no BR needed
building RPM using: set -ex; : build-id: 04726dc5-968c-41bd-982f-3e87bce65de0; TMPDIR=/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/tmp exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD'  --target i486-pld-linux /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/avogadro.spec
+ : build-id: 04726dc5-968c-41bd-982f-3e87bce65de0
+ TMPDIR=/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/tmp
+ exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target i486-pld-linux /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/avogadro.spec
Building target platforms: i486-pld-linux
Executing(%prep): /bin/sh -e /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/tmp/rpm-tmp.49275
+ umask 022
+ cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD
+ cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD
+ rm -rf avogadro-1.0.3
+ /usr/bin/bzip2 -dc /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/avogadro-1.0.3.tar.bz2
+ /bin/tar -xf -
+ STATUS=0 
+ '[' 0 -ne 0 ']'
+ cd avogadro-1.0.3
+ /bin/id -u
+ '[' 2001 '=' 0 ']'
+ /bin/id -u
+ '[' 2001 '=' 0 ']'
+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (avogadro-linguist.patch):'
Patch #0 (avogadro-linguist.patch):
+ '[' -f /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/avogadro-linguist.patch ']'
+ /bin/cat /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/avogadro-linguist.patch
+ /usr/bin/patch -s -p0
+ echo 'Patch #1 (avogadro-cmake.patch):'
Patch #1 (avogadro-cmake.patch):
+ '[' -f /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/avogadro-cmake.patch ']'
+ /bin/cat /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/avogadro-cmake.patch
+ /usr/bin/patch -s -p1
+ echo 'Patch #2 (avogadro-moc-boost.patch):'
Patch #2 (avogadro-moc-boost.patch):
+ '[' -f /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/avogadro-moc-boost.patch ']'
+ /bin/cat /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/avogadro-moc-boost.patch
+ /usr/bin/patch -s -p1
+ exit 0
Executing(%build): /bin/sh -e /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/tmp/rpm-tmp.97570
TMP=/home/users/builder/tmp
HOME=/home/users/builder
PATH=/home/users/builder/GNUstep/Tools:/usr/local/bin:/usr/bin:/bin:/home/users/builder/bin
TMPDIR=/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/tmp
+ umask 022
+ cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD
+ cd avogadro-1.0.3
+ install -d build
+ cd build
+ CC=i486-pld-linux-gcc CXX=i486-pld-linux-g++ CPPFLAGS= /usr/bin/cmake '-DCMAKE_VERBOSE_MAKEFILE=ON' '-DCMAKE_BUILD_TYPE=PLD' '-DCMAKE_INSTALL_BINDIR:PATH=/usr/bin' '-DCMAKE_INSTALL_SBINDIR:PATH=/usr/sbin' '-DCMAKE_INSTALL_LIBEXECDIR:PATH=/usr/lib' '-DCMAKE_INSTALL_SYSCONFDIR:PATH=/etc' '-DCMAKE_INSTALL_SHAREDSTATEDIRPATH:PATH=/var/lib' '-DCMAKE_INSTALL_LOCALSTATEDIRPATH:PATH=/var' '-DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib' '-DCMAKE_INSTALL_INCLUDEDIR:PATH=/usr/include' '-DCMAKE_INSTALL_OLDINCLUDEDIR:PATH=/usr/include' '-DCMAKE_INSTALL_DATAROOTDIR:PATH=/usr/share' '-DCMAKE_INSTALL_DATADIR:PATH=/usr/share' '-DCMAKE_INSTALL_INFODIR:PATH=/usr/share/info' '-DCMAKE_INSTALL_LOCALEDIR:PATH=/usr/share/locale' '-DCMAKE_INSTALL_MANDIR:PATH=/usr/share/man' '-DCMAKE_INSTALL_DOCDIR:PATH=/usr/share/doc' '-DCMAKE_INSTALL_PREFIX:PATH=/usr' '-DSYSCONF_INSTALL_DIR:PATH=/etc' '-DCMAKE_CXX_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i486 -fasynchronous-unwind-tables -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2  -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_C_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i486 -fasynchronous-unwind-tables -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2  -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_Fortran_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i486 -fasynchronous-unwind-tables -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2  -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_EXE_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DCMAKE_SHARED_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DCMAKE_MODULE_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DBUILD_SHARED_LIBS:BOOL=ON' '-DENABLE_GLSL=ON' '-DENABLE_PYTHON=ON' '-DENABLE_UPDATE_CHECKER=OFF' '-DCMAKE_BUILD_TYPE=Release' ..
-- The C compiler identification is GNU 4.9.2
-- The CXX compiler identification is GNU 4.9.2
-- Check for working C compiler: /usr/bin/i486-pld-linux-gcc
-- Check for working C compiler: /usr/bin/i486-pld-linux-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/i486-pld-linux-g++
-- Check for working CXX compiler: /usr/bin/i486-pld-linux-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The build type is Release
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
-- Performing Test COMPILES_WITHOUT_FPERMISSIVE
-- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found
-- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.6", minimum required is "4.5.1") 
-- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so
-- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/lib/libX11.so
-- Found OpenGL: /usr/lib/libGL.so  
-- Found lupdate: /usr/bin/lupdate-qt4
-- Found lrelease: /usr/bin/lrelease-qt4
-- Found lconvert: /usr/lib/qt4/bin/lconvert
-- Found Eigen2: /usr/include/eigen2  
-- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") 
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") 
-- checking for module 'openbabel-2.0>=2.2.2'
--   found openbabel-2.0, version 2.3.2
-- Found OpenBabel 2.2 or later: openbabel
-- Found OpenBabel2 executable: /usr/bin/babel
-- Found Git revision is: 
-- Building released version.
-- Searching for python dependencies...
-- [1/5] Boost Python
-- Boost version: 1.57.0
-- Found the following Boost libraries:
--   python
-- Boost Python found...
-- [2/5] Python Libraries
-- Found PythonLibs: /usr/lib/libpython2.7.so  
-- [3/5] Python Interpreter
-- Found PythonInterp: /usr/bin/python (found version "2.7.9") 
-- [4/5] Numpy Module
-- Numpy headers found
-- [5/5] SIP Module
-- Found sip.h header...
-- All python dependencies found - Python support enabled
-- GLEW found and GLSL support enabled
-- Threaded OpenGL rendering not enabled
-- RPath support enabled for installed binaries and libraries
CMake Warning (dev) at CMakeLists.txt:358 (export_library_dependencies):
  Policy CMP0033 is not set: The export_library_dependencies command should
  not be called.  Run "cmake --help-policy CMP0033" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Setting new boost python libraries
-- Enabled python terminal
-- Python site-packages directory: /usr/lib/python2.7/site-packages
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_CXX_FLAGS_PLD
    CMAKE_C_FLAGS_PLD
    CMAKE_EXE_LINKER_FLAGS_PLD
    CMAKE_Fortran_FLAGS_PLD
    CMAKE_INSTALL_BINDIR
    CMAKE_INSTALL_DATADIR
    CMAKE_INSTALL_DATAROOTDIR
    CMAKE_INSTALL_DOCDIR
    CMAKE_INSTALL_INCLUDEDIR
    CMAKE_INSTALL_INFODIR
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LIBEXECDIR
    CMAKE_INSTALL_LOCALEDIR
    CMAKE_INSTALL_LOCALSTATEDIRPATH
    CMAKE_INSTALL_MANDIR
    CMAKE_INSTALL_OLDINCLUDEDIR
    CMAKE_INSTALL_SBINDIR
    CMAKE_INSTALL_SHAREDSTATEDIRPATH
    CMAKE_INSTALL_SYSCONFDIR
    CMAKE_MODULE_LINKER_FLAGS_PLD
    CMAKE_SHARED_LINKER_FLAGS_PLD
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build
+ /usr/bin/make -Otarget -j9
/usr/bin/cmake -H/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -B/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
/usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
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cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/fragment.moc_parameters
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[  2%] Generating periodictablescene_p.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/periodictablescene_p.moc_parameters
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[  0%] Generating colorbutton.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colorbutton.moc_parameters
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[  2%] Generating plugin.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/plugin.moc_parameters
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[  3%] Generating protein.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/protein.moc_parameters
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[  2%] Generating periodictableview.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/periodictableview.moc_parameters
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[  2%] Generating primitive.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/primitive.moc_parameters
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[  2%] Generating pluginmanager.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/pluginmanager.moc_parameters
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[  3%] Generating pythonerror.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/pythonerror.moc_parameters
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[  2%] Generating plotwidget.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/plotwidget.moc_parameters
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[  4%] Generating zmatrix.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/zmatrix.moc_parameters
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[  3%] Generating toolgroup.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/toolgroup.moc_parameters
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[  3%] Generating tool.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tool.moc_parameters
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[  4%] Generating animation.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/animation.moc_parameters
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[  4%] Generating moleculefile.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/moleculefile.moc_parameters
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[  3%] Generating pythontool_p.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/pythontool_p.moc_parameters
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[  4%] Generating molecule.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/molecule.moc_parameters
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[  5%] Generating residue.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/residue.moc_parameters
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[  5%] Generating ui_bsdysettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/ui_bsdysettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/bsdysettingswidget.ui
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[  5%] Generating elementcolor.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/elementcolor.moc_parameters
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[  4%] Generating pythonengine_p.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/pythonengine_p.moc_parameters
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[  4%] Generating engine.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engine.moc_parameters
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[  4%] Generating bsdyengine.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/bsdyengine.moc_parameters
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[  4%] Generating glwidget.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/glwidget.moc_parameters
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[  3%] Generating pythonextension_p.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/pythonextension_p.moc_parameters
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/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  6%] Generating libavogadro_ar.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-ar.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ar.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ar.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ar.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ar.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 12
[  7%] Generating libavogadro_el.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-el.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_el.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_el.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_el.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_el.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  6%] Generating libavogadro_ca.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-ca.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  6%] Generating libavogadro_da.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-da.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_da.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_da.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_da.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_da.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  6%] Generating libavogadro_de.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-de.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_de.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_de.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_de.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_de.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 11
[  6%] Generating libavogadro_bs.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-bs.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bs.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bs.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bs.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bs.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  5%] Generating libavogadro_bg.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-bg.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bg.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bg.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bg.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bg.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  6%] Generating libavogadro_cs.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-cs.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_cs.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_cs.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_cs.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_cs.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  6%] Generating libavogadro_ca@valencia.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-ca@valencia.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca@valencia.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca@valencia.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca@valencia.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca@valencia.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 13
[  8%] Generating libavogadro_fi.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-fi.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fi.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fi.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fi.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fi.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  8%] Generating libavogadro_en_CA.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-en_CA.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_CA.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_CA.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_CA.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_CA.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  8%] Generating libavogadro_fr.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-fr.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fr.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fr.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fr.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fr.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  7%] Generating libavogadro_eu.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-eu.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_eu.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_eu.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_eu.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_eu.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  8%] Generating libavogadro_es.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-es.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_es.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_es.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_es.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_es.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  7%] Generating libavogadro_en_AU.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-en_AU.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_AU.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_AU.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_AU.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_AU.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  8%] Generating libavogadro_he.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-he.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_he.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_he.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_he.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_he.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  8%] Generating libavogadro_gl.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-gl.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_gl.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_gl.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_gl.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_gl.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  7%] Generating libavogadro_en_GB.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-en_GB.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_GB.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_GB.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_GB.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_GB.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  9%] Generating libavogadro_kn.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-kn.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_kn.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_kn.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_kn.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_kn.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  8%] Generating libavogadro_hi.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-hi.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hi.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hi.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hi.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hi.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  9%] Generating libavogadro_ja.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-ja.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ja.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ja.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ja.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ja.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  8%] Generating libavogadro_hu.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-hu.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hu.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hu.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hu.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hu.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  9%] Generating libavogadro_ko.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-ko.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ko.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ko.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ko.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ko.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 14
[  9%] Generating libavogadro_id.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-id.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_id.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_id.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_id.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_id.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  9%] Generating libavogadro_nb.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-nb.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nb.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nb.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nb.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nb.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[  8%] Generating libavogadro_it.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-it.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_it.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_it.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_it.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_it.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 15
[ 10%] Generating libavogadro_nl.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-nl.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nl.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nl.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nl.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nl.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 10%] Generating libavogadro_oc.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-oc.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_oc.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_oc.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_oc.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_oc.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 10%] Generating libavogadro_pt.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-pt.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 10%] Generating libavogadro_pl.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-pl.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pl.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pl.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pl.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pl.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 10%] Generating libavogadro_sk.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-sk.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sk.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sk.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sk.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sk.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 10%] Generating libavogadro_pt_BR.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-pt_BR.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt_BR.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt_BR.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt_BR.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt_BR.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 10%] Generating libavogadro_ru.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-ru.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ru.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ru.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ru.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ru.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 16
[ 11%] Generating libavogadro_sr.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-sr.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sr.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sr.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sr.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sr.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 11%] Generating libavogadro_sv.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-sv.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sv.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sv.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sv.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sv.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 11%] Generating libavogadro_tr.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-tr.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_tr.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_tr.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_tr.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_tr.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
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/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 11%] Generating libavogadro_ug.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-ug.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ug.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ug.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ug.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ug.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 11%] Generating libavogadro_uk.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-uk.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_uk.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_uk.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_uk.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_uk.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 11%] Generating libavogadro_vi.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-vi.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_vi.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_vi.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_vi.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_vi.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 12%] Generating libavogadro_zh_TW.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-zh_TW.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_TW.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_TW.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_TW.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_TW.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 17
[ 12%] Generating libavogadro_zh_CN.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/libavogadro-zh_CN.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_CN.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_CN.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src'...
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_CN.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_CN.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color=
Scanning dependencies of target avogadro
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/painter.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/painter.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/painter.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/painter.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/glhit.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/glhit.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/glhit.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/glhit.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotaxis.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qchar.h:45,
                 from /usr/include/qt4/QtCore/qstring.h:45,
                 from /usr/include/qt4/QtCore/QString:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotaxis.h:32,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotaxis.cpp:29:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 18
[ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/idlist.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/idlist.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/idlist.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 19
[ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/plotpoint.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotpoint.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotpoint.h:32,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotpoint.cpp:29:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/navigate.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/navigate.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/navigate.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/plotobject.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotobject.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qchar.h:45,
                 from /usr/include/qt4/QtCore/qstring.h:45,
                 from /usr/include/qt4/QtCore/QString:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotobject.h:32,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotobject.cpp:29:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/cylinder_p.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/cylinder_p.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/cylinder_p.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/primitivelist.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/primitivelist.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/primitivelist.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/neighborlist.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/molecule.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/neighborlist.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/neighborlist.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/undosequence.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/undosequence.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtGui/qundostack.h:45,
                 from /usr/include/qt4/QtGui/QUndoCommand:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/undosequence.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/undosequence.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/camera.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/camera.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/camera.h:32,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/camera.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/color.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/color.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/color.h:32,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/color.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colorbutton.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colorbutton.h:31,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colorbutton.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/sphere_p.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/sphere_p.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/sphere_p.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 20
[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/atom.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/atom.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/atom.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/atom.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/bond.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/bond.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/bond.h:31,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/bond.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/extension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extension.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/cube.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/cube.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/cube.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/cube.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/elementtranslator.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/elementtranslator.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/elementtranslator.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/fragment.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/fragment.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/fragment.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/elementdetail_p.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtGui/qgraphicsitem.h:45,
                 from /usr/include/qt4/QtGui/QGraphicsItem:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/elementdetail_p.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/elementdetail_p.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/global.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/global.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/global.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/global.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 21
[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/elementitem_p.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtGui/qgraphicsitem.h:45,
                 from /usr/include/qt4/QtGui/QGraphicsItem:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/elementitem_p.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/elementitem_p.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/plugin.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plugin.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plugin.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/periodictableview.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/periodictableview.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/periodictableview.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/mesh.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/mesh.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/mesh.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/mesh.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/periodictablescene_p.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtGui/qgraphicsscene.h:45,
                 from /usr/include/qt4/QtGui/QGraphicsScene:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/periodictablescene_p.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/periodictablescene_p.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 22
[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/meshgenerator.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/meshgenerator.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/meshgenerator.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 23
[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/primitive.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/primitive.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/primitive.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/primitive.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/glpainter_p.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/glpainter_p.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/glpainter_p.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/glpainter_p.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/plotwidget.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotwidget.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotwidget.h:32,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/plotwidget.cpp:29:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/protein.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/protein.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/protein.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/protein.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/textrenderer_p.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/textrenderer_p.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/textrenderer_p.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 24
[ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/tool.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tool.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tool.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/zmatrix.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/zmatrix.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/zmatrix.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/zmatrix.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/toolgroup.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/toolgroup.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/toolgroup.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/pythonerror.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythonerror.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/pythonerror.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythonerror.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/pluginmanager.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pluginmanager.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pluginmanager.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pluginmanager.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythonextension_p.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythonextension_p.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythonextension_p.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/pythontool_p.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythontool_p.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythontool_p.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythontool_p.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/animation.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/animation.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/animation.h:27,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/animation.cpp:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/engine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engine.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engine.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 26
[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/qrc_pythontool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/qrc_pythontool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/pythonscript.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythonscript.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythonscript.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythonscript.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythoninterpreter.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythoninterpreter.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythoninterpreter.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colors/elementcolor.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/colors/elementcolor.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/elementcolor.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/elementcolor.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/elementcolor.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/residue.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/residue.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/fragment.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/residue.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/residue.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engines/bsdyengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/engines/bsdyengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/bsdyengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/bsdyengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/bsdyengine.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/molecule.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/molecule.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/molecule.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythonengine_p.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythonengine_p.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/pythonengine_p.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 25
[ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7    -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/glwidget.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/glwidget.cpp:31:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared library ../../lib/libavogadro.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,libavogadro.so.1 -o ../../lib/libavogadro.so.1.0.3 CMakeFiles/avogadro.dir/camera.cpp.o CMakeFiles/avogadro.dir/cylinder_p.cpp.o CMakeFiles/avogadro.dir/glhit.cpp.o CMakeFiles/avogadro.dir/idlist.cpp.o CMakeFiles/avogadro.dir/navigate.cpp.o CMakeFiles/avogadro.dir/neighborlist.cpp.o CMakeFiles/avogadro.dir/painter.cpp.o CMakeFiles/avogadro.dir/plotaxis.cpp.o CMakeFiles/avogadro.dir/plotobject.cpp.o CMakeFiles/avogadro.dir/plotpoint.cpp.o CMakeFiles/avogadro.dir/primitivelist.cpp.o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o CMakeFiles/avogadro.dir/pythonscript.cpp.o CMakeFiles/avogadro.dir/sphere_p.cpp.o CMakeFiles/avogadro.dir/undosequence.cpp.o CMakeFiles/avogadro.dir/atom.cpp.o CMakeFiles/avogadro.dir/bond.cpp.o CMakeFiles/avogadro.dir/color.cpp.o CMakeFiles/avogadro.dir/colorbutton.cpp.o CMakeFiles/avogadro.dir/cube.cpp.o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o CMakeFiles/avogadro.dir/elementitem_p.cpp.o CMakeFiles/avogadro.dir/elementtranslator.cpp.o CMakeFiles/avogadro.dir/extension.cpp.o CMakeFiles/avogadro.dir/fragment.cpp.o CMakeFiles/avogadro.dir/global.cpp.o CMakeFiles/avogadro.dir/glpainter_p.cpp.o CMakeFiles/avogadro.dir/mesh.cpp.o CMakeFiles/avogadro.dir/meshgenerator.cpp.o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o CMakeFiles/avogadro.dir/periodictableview.cpp.o CMakeFiles/avogadro.dir/plotwidget.cpp.o CMakeFiles/avogadro.dir/plugin.cpp.o CMakeFiles/avogadro.dir/pluginmanager.cpp.o CMakeFiles/avogadro.dir/primitive.cpp.o CMakeFiles/avogadro.dir/protein.cpp.o CMakeFiles/avogadro.dir/pythonerror.cpp.o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o CMakeFiles/avogadro.dir/pythontool_p.cpp.o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o CMakeFiles/avogadro.dir/tool.cpp.o CMakeFiles/avogadro.dir/toolgroup.cpp.o CMakeFiles/avogadro.dir/zmatrix.cpp.o CMakeFiles/avogadro.dir/moleculefile.cpp.o CMakeFiles/avogadro.dir/animation.cpp.o CMakeFiles/avogadro.dir/engine.cpp.o CMakeFiles/avogadro.dir/glwidget.cpp.o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o CMakeFiles/avogadro.dir/residue.cpp.o CMakeFiles/avogadro.dir/molecule.cpp.o CMakeFiles/avogadro.dir/engines/bsdyengine.cpp.o CMakeFiles/avogadro.dir/colors/elementcolor.cpp.o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o  -L/usr/lib/libGLEW.so -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so::::::::: 
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/cmake -E cmake_symlink_library ../../lib/libavogadro.so.1.0.3 ../../lib/libavogadro.so.1 ../../lib/libavogadro.so
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26
[ 21%] Built target avogadro
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/overlayengine.dir/build.make libavogadro/src/engines/CMakeFiles/overlayengine.dir/depend
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 47
[ 23%] Generating ui_cartoonsettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_cartoonsettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonsettingswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 21%] Generating ui_hbondsettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_hbondsettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/hbondsettingswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 22%] Generating ui_ribbonsettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_ribbonsettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/ribbonsettingswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 21%] Generating ui_dipolesettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_dipolesettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/dipolesettingswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 67
[ 22%] Generating ui_labelsettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_labelsettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/labelsettingswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 23%] Generating moc_overlayengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_overlayengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 22%] Generating moc_axesengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_axesengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 21%] Generating moc_forceengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_forceengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 21%] Generating moc_polygonengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_polygonengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 23%] Generating moc_hbondengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_hbondengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 83
[ 24%] Generating moc_ribbonengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ribbonengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 23%] Generating moc_labelengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_labelengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 23%] Generating moc_dipoleengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_dipoleengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 23%] Generating moc_cartoonengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_cartoonengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 24%] Generating moc_cartoonmeshgenerator.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_cartoonmeshgenerator.cxx_parameters
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonmeshgenerator.h:0: Note: No relevant classes found. No output generated.
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color=
Scanning dependencies of target dipoleengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color=
Scanning dependencies of target ribbonengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color=
Scanning dependencies of target axesengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color=
Scanning dependencies of target labelengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color=
Scanning dependencies of target polygonengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color=
Scanning dependencies of target forceengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color=
Scanning dependencies of target hbondengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/overlayengine.dir/DependInfo.cmake --color=
Scanning dependencies of target overlayengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/overlayengine.dir/build.make libavogadro/src/engines/CMakeFiles/overlayengine.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color=
Scanning dependencies of target cartoonengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/overlayengine.dir/overlayengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Doverlayengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/overlayengine.dir/overlayengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/overlayengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/overlayengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/overlayengine.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/forceengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/forceengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/forceengine.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 45
[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/axesengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/axesengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/axesengine.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/dipoleengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/dipoleengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/dipoleengine.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 72
[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/polygonengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/polygonengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/polygonengine.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/ribbonengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/ribbonengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/ribbonengine.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_axesengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_axesengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/overlayengine.dir/moc_overlayengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Doverlayengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/overlayengine.dir/moc_overlayengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_overlayengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/overlayengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_overlayengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_forceengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_forceengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/labelengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/labelengine.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/labelengine.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/hbondengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/hbondengine.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/hbondengine.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_polygonengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_polygonengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 50
[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_dipoleengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_dipoleengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonengine.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonengine.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/overlayengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/overlayengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,overlayengine.so -o ../../../lib/overlayengine.so CMakeFiles/overlayengine.dir/overlayengine.cpp.o CMakeFiles/overlayengine.dir/moc_overlayengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Built target overlayengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/axesengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,axesengine.so -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Generating ui_ringsettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_ringsettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/ringsettingswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  45
[ 27%] Built target axesengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/forceengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,forceengine.so -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Built target forceengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ribbonengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ribbonengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Generating ui_spheresettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_spheresettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/spheresettingswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Generating moc_simplewireengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_simplewireengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Generating moc_ringengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ringengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_labelengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_labelengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color=
Scanning dependencies of target simplewireengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color=
Scanning dependencies of target ringengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_hbondengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_hbondengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Generating moc_sphereengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_sphereengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/polygonengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,polygonengine.so -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color=
Scanning dependencies of target sphereengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  72
[ 28%] Built target polygonengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/dipoleengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,dipoleengine.so -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 28%] Generating ui_sticksettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_sticksettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/sticksettingswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  50
[ 28%] Built target dipoleengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 28%] Generating ui_surfacesettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_surfacesettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/surfacesettingswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 28%] Generating moc_stickengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_stickengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color=
Scanning dependencies of target stickengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 92
[ 29%] Generating moc_surfaceengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_surfaceengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color=
Scanning dependencies of target surfaceengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/simplewireengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/simplewireengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/simplewireengine.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/ribbonengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,ribbonengine.so -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/labelengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,labelengine.so -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  83
[ 29%] Built target ribbonengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  67
[ 29%] Built target labelengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/hbondengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,hbondengine.so -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 29%] Built target hbondengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 29%] Generating ui_wiresettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_wiresettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/wiresettingswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 29%] Generating moc_wireengine.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_wireengine.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color=
Scanning dependencies of target wireengine
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 84
[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/ringengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/ringengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/ringengine.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_simplewireengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_simplewireengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_surfaceengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_surfaceengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonmeshgenerator.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonmeshgenerator.h:39,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonmeshgenerator.cpp:36:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/sphereengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/sphereengine.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/sphereengine.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ringengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ringengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonmeshgenerator.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/cartoonengine.dir/moc_cartoonmeshgenerator.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_cartoonmeshgenerator.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/surfaceengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/surfaceengine.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/surfaceengine.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 100
[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_wireengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_wireengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/simplewireengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,simplewireengine.so -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 31%] Built target simplewireengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 90
[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_sphereengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_sphereengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 31%] Generating qrc_aligntool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name aligntool -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_aligntool.cxx /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/aligntool.qrc
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 4
[ 32%] Generating qrc_autoopttool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name autoopttool -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autoopttool.cxx /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/autoopttool.qrc
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/stickengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/stickengine.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/stickengine.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 32%] Generating moc_aligntool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_aligntool.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 32%] Generating qrc_autorotatetool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name autorotatetool -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autorotatetool.cxx /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/autorotatetool.qrc
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color=
Scanning dependencies of target aligntool
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 32%] Generating moc_autoopttool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autoopttool.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 32%] Generating moc_autorotatetool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autorotatetool.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_cartoonengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_cartoonengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color=
Scanning dependencies of target autoopttool
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color=
Scanning dependencies of target autorotatetool
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/ringengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,ringengine.so -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  84
[ 33%] Built target ringengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_stickengine.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_stickengine.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 33%] Generating qrc_bondcentrictool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name bondcentrictool -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_bondcentrictool.cxx /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/bondcentrictool.qrc
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/surfaceengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,surfaceengine.so -o ../../../lib/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  92
[ 33%] Built target surfaceengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/sphereengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,sphereengine.so -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  90
[ 33%] Built target sphereengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 33%] Generating moc_bondcentrictool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
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/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 33%] Generating qrc_clickmeasuretool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name clickmeasuretool -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/clickmeasuretool.qrc
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
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/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 33%] Generating moc_skeletontree.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_skeletontree.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color=
Scanning dependencies of target bondcentrictool
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/usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 33%] Generating moc_clickmeasuretool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines    -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/wireengine.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/wireengine.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/engines/wireengine.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color=
Scanning dependencies of target clickmeasuretool
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/cartoonengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,cartoonengine.so -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o CMakeFiles/cartoonengine.dir/moc_cartoonmeshgenerator.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  47
[ 33%] Built target cartoonengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 5
[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/autorotatetool.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/autorotatetool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/autorotatetool.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/stickengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,stickengine.so -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 33%] Built target stickengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 51
[ 34%] Generating qrc_drawtool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name drawtool -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_drawtool.cxx /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawtool.qrc
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 34%] Generating moc_drawtool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_drawtool.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 34%] Generating moc_drawcommand.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_drawcommand.cxx_parameters
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawcommand.h:0: Note: No relevant classes found. No output generated.
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color=
Scanning dependencies of target drawtool
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/usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/wireengine.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,wireengine.so -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  100
[ 34%] Built target wireengine
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_clickmeasuretool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_clickmeasuretool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autorotatetool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autorotatetool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 34%] Generating qrc_manipulatetool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name manipulatetool -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_manipulatetool.cxx /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/manipulatetool.qrc
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autorotatetool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autorotatetool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 34%] Generating moc_eyecandy.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_eyecandy.cxx_parameters
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.h:0: Note: No relevant classes found. No output generated.
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 34%] Generating moc_manipulatetool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_manipulatetool.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 32%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/aligntool.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/aligntool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/aligntool.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color=
Scanning dependencies of target manipulatetool
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autoopttool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autoopttool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_aligntool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_aligntool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 32%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/autoopttool.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/autoopttool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/autoopttool.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autoopttool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autoopttool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/clickmeasuretool.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/clickmeasuretool.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/clickmeasuretool.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_aligntool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/aligntool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_aligntool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/autorotatetool.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,autorotatetool.so -o ../../../lib/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  5
[ 35%] Built target autorotatetool
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/bondcentrictool.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.h:33,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/bondcentrictool.h:32,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/bondcentrictool.cpp:29:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 35%] Generating qrc_navigatetool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name navigatetool -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_navigatetool.cxx /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/navigatetool.qrc
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_manipulatetool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_manipulatetool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 36%] Generating moc_navigatetool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_navigatetool.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_eyecandy.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/manipulatetool.dir/moc_eyecandy.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_eyecandy.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 36%] Generating ui_navigatesettingswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/ui_navigatesettingswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/navigatesettingswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color=
Scanning dependencies of target navigatetool
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/autoopttool.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,autoopttool.so -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/clickmeasuretool.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,clickmeasuretool.so -o ../../../lib/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 37%] Built target clickmeasuretool
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/cstddef:44,
                 from /usr/include/eigen2/Eigen/Core:55,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  4
[ 37%] Built target autoopttool
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_manipulatetool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_manipulatetool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/aligntool.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,aligntool.so -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 37%] Built target aligntool
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 37%] Generating qrc_selectrotatetool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name selectrotatetool -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_selectrotatetool.cxx /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/selectrotatetool.qrc
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_eyecandy.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnavigatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/navigatetool.dir/moc_eyecandy.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_eyecandy.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 37%] Generating moc_selectrotatetool.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnavigatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_navigatetool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_navigatetool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 68
[ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/manipulatetool.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/manipulatetool.h:27,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/manipulatetool.cpp:24:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color=
Scanning dependencies of target selectrotatetool
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawtool.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawtool.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawtool.cpp:28:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_drawtool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_drawtool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 46
[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.h:33,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawcommand.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/drawtool.dir/moc_drawcommand.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_drawcommand.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_drawtool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_drawtool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnavigatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_navigatetool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_navigatetool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 38%] Generating qrc_animation.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/rcc -name animation -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/qrc_animation.cxx /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animation.qrc
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_bondcentrictool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_bondcentrictool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/manipulatetool.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,manipulatetool.so -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/moc_eyecandy.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  68
[ 39%] Built target manipulatetool
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 38%] Generating moc_animationextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 1
[ 39%] Generating moc_animationdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_skeletontree.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:33,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_skeletontree.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 39%] Generating ui_fileimportdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_fileimportdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/fileimportdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 39%] Generating moc_povpainter.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povpainter.cxx_parameters
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.h:0: Note: No relevant classes found. No output generated.
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnavigatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/cstddef:44,
                 from /usr/include/eigen2/Eigen/Core:55,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gamessextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 39%] Generating moc_trajvideomaker.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_trajvideomaker.cxx_parameters
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/trajvideomaker.h:0: Note: No relevant classes found. No output generated.
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 40%] Generating ui_conformersearchdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_conformersearchdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/conformersearchdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawcommand.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtGui/qundostack.h:45,
                 from /usr/include/qt4/QtGui/QUndoCommand:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawcommand.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawcommand.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 52
[ 40%] Generating moc_fileimportextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 40%] Generating ui_animationdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_animationdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 57
[ 41%] Generating ui_gamessefpmatchdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_gamessefpmatchdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessefpmatchdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 42%] Generating moc_h2methylextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 70
[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnavigatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/navigatetool.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/navigatetool.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/navigatetool.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color=
Scanning dependencies of target fileimportextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color=
Scanning dependencies of target animationextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color=
Scanning dependencies of target h2methylextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 53
[ 42%] Generating moc_forcefieldextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Generating moc_forcefielddialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_bondcentrictool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:33,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:32,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_bondcentrictool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 56
[ 43%] Generating moc_gamessextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Generating moc_gamessinputdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessinputdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Generating moc_constraintsdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Generating moc_gamessinputdata.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessinputdata.cxx_parameters
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdata.h:0: Note: No relevant classes found. No output generated.
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Generating moc_constraintsmodel.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Generating moc_gamesshighlighter.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamesshighlighter.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Generating moc_conformersearchdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Generating ui_forcefielddialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_forcefielddialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefielddialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 85
[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/selectrotatetool.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/selectrotatetool.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/selectrotatetool.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Generating moc_gamessefpmatchdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessefpmatchdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/drawtool.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,drawtool.so -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/moc_drawcommand.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 54
[ 44%] Generating ui_constraintsdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_constraintsdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
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/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 44%] Generating ui_gamessinputdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_gamessinputdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  51
[ 44%] Built target drawtool
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/navigatetool.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,navigatetool.so -o ../../../lib/navigatetool.so CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/moc_eyecandy.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  70
[ 44%] Built target navigatetool
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/gamessextension.dir/DependInfo.cmake --color=
Scanning dependencies of target gamessextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gamessextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color=
Scanning dependencies of target forcefieldextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_selectrotatetool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_selectrotatetool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/bondcentrictool.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,bondcentrictool.so -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  46
[ 44%] Built target bondcentrictool
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
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/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 44%] Generating moc_hydrogensextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/DependInfo.cmake --color=
Scanning dependencies of target hydrogenextension
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/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/h2methylextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/h2methylextension.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/h2methylextension.cpp:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools    -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_selectrotatetool.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_selectrotatetool.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/fileimportextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qvariant.h:45,
                 from /usr/include/qt4/QtCore/QVariant:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_fileimportdialog.h:12,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/fileimportextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/fileimportextension.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationextension.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_fileimportextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qvariant.h:45,
                 from /usr/include/qt4/QtCore/QVariant:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_fileimportdialog.h:12,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_fileimportextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 59
[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_h2methylextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_h2methylextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefielddialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefielddialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefielddialog.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/selectrotatetool.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,selectrotatetool.so -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  85
[ 47%] Built target selectrotatetool
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 62
[ 48%] Generating ui_qcheminputdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_qcheminputdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/qcheminputdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 60
[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/hydrogensextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogenextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/hydrogenextension.dir/hydrogensextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/hydrogensextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/hydrogensextension.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/hydrogensextension.cpp:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 48%] Generating ui_insertfragmentdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_insertfragmentdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/moc_hydrogensextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogenextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/hydrogenextension.dir/moc_hydrogensextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_hydrogensextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_hydrogensextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/fileimportextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,fileimportextension.so -o ../../../lib/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  52
[ 49%] Built target fileimportextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 48%] Generating moc_inputfileextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_inputfileextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 64
[ 49%] Generating moc_insertfragmentextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 66
[ 50%] Generating ui_insertpeptidedialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_insertpeptidedialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertpeptidedialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 2
[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationdialog.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
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/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 49%] Generating moc_gaussianinputdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gaussianinputdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 50%] Generating moc_insertfragmentdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 50%] Generating moc_insertcommand.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertcommand.cxx_parameters
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.h:0: Note: No relevant classes found. No output generated.
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
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/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 50%] Generating moc_insertpeptideextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/h2methylextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,h2methylextension.so -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 50%] Generating moc_molproinputdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molproinputdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 50%] Generating moc_insertcommand.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertcommand.cxx_parameters
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.h:0: Note: No relevant classes found. No output generated.
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  59
[ 50%] Built target h2methylextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color=
Scanning dependencies of target insertfragmentextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 50%] Generating ui_molecularpropdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_molecularpropdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molecularpropdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color=
Scanning dependencies of target insertpeptideextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build
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/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 50%] Generating moc_mopacinputdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_mopacinputdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
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/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 50%] Generating moc_molecularpropextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color=
Scanning dependencies of target molecularpropextension
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/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 61
[ 51%] Generating moc_nwcheminputdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_nwcheminputdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefieldextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefielddialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefieldextension.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefieldextension.cpp:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/hydrogenextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogenextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,hydrogenextension.so -o ../../../lib/hydrogenextension.so CMakeFiles/hydrogenextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogenextension.dir/moc_hydrogensextension.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 52%] Generating moc_qcheminputdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_qcheminputdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  60
[ 52%] Built target hydrogenextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 52%] Generating ui_gaussianinputdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_gaussianinputdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianinputdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 52%] Generating moc_networkfetchextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_networkfetchextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 52%] Generating ui_molproinputdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_molproinputdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molproinputdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color=
Scanning dependencies of target networkfetchextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 52%] Generating ui_mopacinputdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_mopacinputdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacinputdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 53%] Generating ui_nwcheminputdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_nwcheminputdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/nwcheminputdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/bits/stl_algobase.h:59,
                 from /usr/include/c++/4.9.2/vector:60,
                 from /usr/include/openbabel-2.0/openbabel/forcefield.h:22,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsmodel.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsdialog.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color=
Scanning dependencies of target inputfileextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessextension.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessextension.cpp:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentextension.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 69
[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molecularpropextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molecularpropextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molecularpropextension.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsmodel.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/bits/stl_algobase.h:59,
                 from /usr/include/c++/4.9.2/vector:60,
                 from /usr/include/openbabel-2.0/openbabel/forcefield.h:22,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsmodel.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsmodel.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 71
[ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/networkfetchextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/networkfetchextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/networkfetchextension.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 55
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/conformersearchdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/conformersearchdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/conformersearchdialog.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/trajvideomaker.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/trajvideomaker.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/trajvideomaker.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/inputfileextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/inputfileextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/inputfileextension.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertpeptideextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertpeptideextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertpeptideextension.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molecularpropextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molecularpropextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_networkfetchextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_networkfetchextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefielddialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefielddialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefieldextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefieldextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentdialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentdialog.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/molecularpropextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,molecularpropextension.so -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  69
[ 55%] Built target molecularpropextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/networkfetchextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,networkfetchextension.so -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtGui/qundostack.h:45,
                 from /usr/include/qt4/QtGui/QUndoCommand:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 55%] Generating ui_povraydialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_povraydialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povraydialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  71
[ 55%] Built target networkfetchextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 55%] Generating moc_povrayextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povrayextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 55%] Generating moc_propextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 55%] Generating moc_povraydialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povraydialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color=
Scanning dependencies of target povrayextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 55%] Generating __/tools/moc_skeletontree.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/tools && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 65
[ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtGui/qundostack.h:45,
                 from /usr/include/qt4/QtGui/QUndoCommand:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_povpainter.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/animationextension.dir/moc_povpainter.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povpainter.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 74
[ 56%] Generating moc_propmodel.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propmodel.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 3
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_trajvideomaker.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/animationextension.dir/moc_trajvideomaker.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_trajvideomaker.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color=
Scanning dependencies of target propextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animation.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/animationextension.dir/qrc_animation.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/qrc_animation.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/qrc_animation.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsmodel.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/bits/stl_algobase.h:59,
                 from /usr/include/c++/4.9.2/vector:60,
                 from /usr/include/openbabel-2.0/openbabel/forcefield.h:22,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsmodel.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/bits/stl_algobase.h:59,
                 from /usr/include/c++/4.9.2/vector:60,
                 from /usr/include/openbabel-2.0/openbabel/forcefield.h:22,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertcommand.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/insertpeptideextension.dir/moc_insertcommand.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertcommand.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianinputdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianinputdialog.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianinputdialog.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/animationextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,animationextension.so -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/moc_povpainter.cxx.o CMakeFiles/animationextension.dir/moc_trajvideomaker.cxx.o CMakeFiles/animationextension.dir/qrc_animation.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  1 2 3
[ 58%] Built target animationextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 73
[ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povrayextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povraydialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povrayextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povrayextension.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/insertpeptideextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,insertpeptideextension.so -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o CMakeFiles/insertpeptideextension.dir/moc_insertcommand.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  66
[ 58%] Built target insertpeptideextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Generating ui_pythonterminalwidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_pythonterminalwidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/pythonterminalwidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.h:33,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertcommand.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/insertfragmentextension.dir/moc_insertcommand.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertcommand.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Generating moc_pythonterminal.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Generating moc_highlighter.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_highlighter.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color=
Scanning dependencies of target pythonterminal
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/insertfragmentextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,insertfragmentextension.so -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertcommand.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  64 65
[ 58%] Built target insertfragmentextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdata.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/iostream:38,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdata.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdata.cpp:14:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Generating moc_selectextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_selectextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color=
Scanning dependencies of target selectextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povraydialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povraydialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povraydialog.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/forcefieldextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,forcefieldextension.so -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  53 54 55
[ 58%] Built target forcefieldextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povpainter.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/povrayextension.dir/moc_povpainter.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povpainter.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Generating ui_shaderdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_shaderdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/shaderdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Generating moc_shaderextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_shaderextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color=
Scanning dependencies of target shaderextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molproinputdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molproinputdialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molproinputdialog.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propmodel.cpp
In file included from /usr/include/math.h:26:0,
                 from /usr/include/openbabel-2.0/openbabel/mol.h:31,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propmodel.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propmodel.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povrayextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povrayextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povraydialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povraydialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:33,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamesshighlighter.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45,
                 from /usr/include/qt4/QtGui/QSyntaxHighlighter:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamesshighlighter.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamesshighlighter.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/selectextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/selectextension.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/selectextension.cpp:24:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/povrayextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,povrayextension.so -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povpainter.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  73
[ 59%] Built target povrayextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/CMakeFiles/spectraextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 59%] Generating ui_spectratabnmr.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_spectratabnmr.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratabnmr.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 59%] Generating moc_spectraextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectraextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 59%] Generating moc_spectradialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectradialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/shaderextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/shaderextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/shaderextension.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/propextension.dir/propextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propextension.cpp
In file included from /usr/include/math.h:26:0,
                 from /usr/include/openbabel-2.0/openbabel/mol.h:31,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propmodel.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propextension.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacinputdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacinputdialog.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacinputdialog.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 87
[ 60%] Generating moc_spectratype.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdialog.cpp:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 61%] Generating moc_spectratype_ir.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_ir.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_selectextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/selectextension.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_selectextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 62%] Generating moc_spectratype_nmr.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_nmr.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 75
[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propmodel.cxx
In file included from /usr/include/math.h:26:0,
                 from /usr/include/openbabel-2.0/openbabel/mol.h:31,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propmodel.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 62%] Generating ui_spectradialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_spectradialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectradialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 62%] Generating ui_spectratabir.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_spectratabir.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratabir.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessefpmatchdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessefpmatchdialog.h:27,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessefpmatchdialog.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/spectraextension.dir/DependInfo.cmake --color=
Scanning dependencies of target spectraextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/CMakeFiles/spectraextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 86
[ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_shaderextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_shaderextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/selectextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,selectextension.so -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 64%] Built target selectextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/pythonterminal.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/pythonterminal.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/pythonterminal.cpp:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 58
[ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessinputdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gamessinputdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessinputdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/shaderextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,shaderextension.so -o ../../../lib/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propextension.cxx
In file included from /usr/include/math.h:26:0,
                 from /usr/include/openbabel-2.0/openbabel/mol.h:31,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  86
[ 65%] Built target shaderextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gamessinputdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gamessextension.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessinputdata.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/gamessextension.dir/moc_gamessinputdata.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessinputdata.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 88
[ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectraextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectraextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectradialog.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectraextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectraextension.cpp:19:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/highlighter.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45,
                 from /usr/include/qt4/QtGui/QSyntaxHighlighter:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/highlighter.h:22,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/highlighter.cpp:19:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_highlighter.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45,
                 from /usr/include/qt4/QtGui/QSyntaxHighlighter:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_highlighter.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 63
[ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/qcheminputdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/qcheminputdialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/qcheminputdialog.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/nwcheminputdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/nwcheminputdialog.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/nwcheminputdialog.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/propextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,propextension.so -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamesshighlighter.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45,
                 from /usr/include/qt4/QtGui/QSyntaxHighlighter:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gamesshighlighter.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamesshighlighter.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  74 75
[ 65%] Built target propextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_inputfileextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/inputfileextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_inputfileextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gaussianinputdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gaussianinputdialog.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gaussianinputdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molproinputdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molproinputdialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molproinputdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype.cpp:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Generating ui_supercelldialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_supercelldialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercelldialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessefpmatchdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gamessefpmatchdialog.h:27,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessefpmatchdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Generating moc_supercellextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercellextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype_ir.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/spectraextension.dir/spectratype_ir.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_ir.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qhash.h:45,
                 from /usr/include/qt4/QtCore/QHash:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_ir.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_ir.cpp:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 91
[ 66%] Generating moc_supercelldialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color=
Scanning dependencies of target supercellextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype_nmr.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/spectraextension.dir/spectratype_nmr.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_nmr.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qhash.h:45,
                 from /usr/include/qt4/QtCore/QHash:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_nmr.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_nmr.cpp:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_mopacinputdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/mopacinputdialog.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_mopacinputdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_nwcheminputdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/nwcheminputdialog.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_nwcheminputdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_qcheminputdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/qcheminputdialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_qcheminputdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/gamessextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,gamessextension.so -o ../../../lib/gamessextension.so CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdata.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  56 57 58
[ 67%] Built target gamessextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 67%] Generating ui_surfacedialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_surfacedialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfacedialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 67%] Generating moc_surfaceextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfaceextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectradialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectradialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectradialog.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectradialog.cpp:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 67%] Generating moc_surfacedialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfacedialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 93
[ 68%] Generating moc_basisset.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_basisset.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Generating ui_unitcellparamdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_unitcellparamdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellparamdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 66%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectraextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectradialog.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectraextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectraextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Generating moc_gaussianfchk.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gaussianfchk.cxx_parameters
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianfchk.h:0: Note: No relevant classes found. No output generated.
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Generating moc_unitcellextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Generating moc_slaterset.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_slaterset.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/inputfileextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,inputfileextension.so -o ../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Generating moc_unitcellparamdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellparamdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  61 62 63
[ 68%] Built target inputfileextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Generating moc_mopacaux.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_mopacaux.cxx_parameters
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacaux.h:0: Note: No relevant classes found. No output generated.
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/DependInfo.cmake --color=
Scanning dependencies of target unitcellextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectratype.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 89
[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectradialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectradialog.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectradialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Generating ui_vibrationdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_vibrationdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Generating moc_molpro.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molpro.cxx_parameters
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molpro.h:0: Note: No relevant classes found. No output generated.
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Generating moc_vdwsurface.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vdwsurface.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Generating moc_vibrationdialog.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationdialog.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Generating moc_vibrationextension.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationextension.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype_ir.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/spectraextension.dir/moc_spectratype_ir.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_ir.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qhash.h:45,
                 from /usr/include/qt4/QtCore/QHash:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectratype_ir.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_ir.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 94
[ 69%] Generating __/__/qtiocompressor/moc_qtiocompressor.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/__/qtiocompressor && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/__/qtiocompressor/moc_qtiocompressor.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color=
Scanning dependencies of target vibrationextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color=
Scanning dependencies of target surfaceextension
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 66%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercellextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercellextension.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercellextension.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 82
[ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_pythonterminal.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_pythonterminal.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 98
[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/moc_unitcellextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dunitcellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/unitcellextension.dir/moc_unitcellextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/unitcellextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/moc_unitcellparamdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dunitcellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/unitcellextension.dir/moc_unitcellparamdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellparamdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/unitcellparamdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellparamdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/unitcellparamdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dunitcellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/unitcellextension.dir/unitcellparamdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellparamdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellparamdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellparamdialog.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype_nmr.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/spectraextension.dir/moc_spectratype_nmr.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_nmr.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qhash.h:45,
                 from /usr/include/qt4/QtCore/QHash:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectratype_nmr.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_nmr.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercelldialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qvariant.h:45,
                 from /usr/include/qt4/QtCore/QVariant:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_supercelldialog.h:12,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercelldialog.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercelldialog.cpp:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercellextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercellextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/pythonterminal.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,pythonterminal.so -o ../../../lib/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  82
[ 70%] Built target pythonterminal
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercelldialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qvariant.h:45,
                 from /usr/include/qt4/QtCore/QVariant:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_supercelldialog.h:12,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercelldialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Generating moc_atomindexcolor.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 68%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/unitcellextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dunitcellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/unitcellextension.dir/unitcellextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellextension.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color=
Scanning dependencies of target atomindexcolor
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/spectraextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,spectraextension.so -o ../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/spectratype_ir.cpp.o CMakeFiles/spectraextension.dir/spectratype_nmr.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype_ir.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype_nmr.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  87 88 89
[ 70%] Built target spectraextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Generating moc_chargecolor.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_chargecolor.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color=
Scanning dependencies of target chargecolor
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationextension.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/gaussianfchk.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/gaussianfchk.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianfchk.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qchar.h:45,
                 from /usr/include/qt4/QtCore/qstring.h:45,
                 from /usr/include/qt4/QtCore/QString:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianfchk.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianfchk.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/supercellextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,supercellextension.so -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfaceextension.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfacedialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfaceextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfaceextension.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  91
[ 71%] Built target supercellextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfacedialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfacedialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfacedialog.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/unitcellextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/unitcellextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,unitcellextension.so -o ../../../lib/unitcellextension.so CMakeFiles/unitcellextension.dir/unitcellextension.cpp.o CMakeFiles/unitcellextension.dir/unitcellparamdialog.cpp.o CMakeFiles/unitcellextension.dir/moc_unitcellextension.cxx.o CMakeFiles/unitcellextension.dir/moc_unitcellparamdialog.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 49
[ 73%] Generating moc_customcolor.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_customcolor.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  98
[ 73%] Built target unitcellextension
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color=
Scanning dependencies of target customcolor
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/basisset.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/basisset.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/basisset.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/basisset.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/basisset.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 73%] Generating moc_distancecolor.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_distancecolor.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors    -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/atomindexcolor.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/atomindexcolor.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/atomindexcolor.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color=
Scanning dependencies of target distancecolor
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 71%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors    -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/chargecolor.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/chargecolor.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/chargecolor.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 73%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors    -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_atomindexcolor.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_atomindexcolor.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 73%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors    -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/customcolor.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/customcolor.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/customcolor.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 95
[ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/mopacaux.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/mopacaux.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacaux.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qchar.h:45,
                 from /usr/include/qt4/QtCore/qstring.h:45,
                 from /usr/include/qt4/QtCore/QString:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacaux.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacaux.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 48
[ 74%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors    -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_chargecolor.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_chargecolor.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 99
[ 71%] Building CXX object libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/vibrationdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/vibrationextension.dir/vibrationdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationdialog.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 74%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors    -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_customcolor.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/../../../../libavogadro/src/colors/customcolor.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_customcolor.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 73%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors    -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/distancecolor.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/distancecolor.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/distancecolor.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/__/__/qtiocompressor/qtiocompressor.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/__/__/qtiocompressor/qtiocompressor.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/qtiocompressor/qtiocompressor.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qiodevice.h:46,
                 from /usr/include/qt4/QtCore/QIODevice:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/qtiocompressor/qtiocompressor.h:50,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/qtiocompressor/qtiocompressor.cpp:47:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 73%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/molpro.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/molpro.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molpro.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qchar.h:45,
                 from /usr/include/qt4/QtCore/qstring.h:45,
                 from /usr/include/qt4/QtCore/QString:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molpro.h:31,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molpro.cpp:28:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/atomindexcolor.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,atomindexcolor.so -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 74%] Built target atomindexcolor
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 73%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vdwsurface.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vdwsurface.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vdwsurface.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 74%] Generating ui_residuecolorsettings.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/ui_residuecolorsettings.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/residuecolorsettings.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/chargecolor.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,chargecolor.so -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 74%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors    -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_distancecolor.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_distancecolor.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  48
[ 75%] Built target chargecolor
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 74%] Generating moc_residuecolor.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_residuecolor.cxx_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color=
Scanning dependencies of target residuecolor
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vibrationdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vibrationextension.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 75%] Generating moleculelist.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python/moleculelist.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/customcolor.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,customcolor.so -o ../../../lib/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  49
[ 75%] Built target customcolor
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfacedialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/surfacedialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfacedialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfaceextension.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/surfacedialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/surfaceextension.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfaceextension.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color=
Scanning dependencies of target python-module
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 75%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/moc_gaussianfchk.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/moc_gaussianfchk.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gaussianfchk.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 96
[ 75%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/moc_basisset.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/moc_basisset.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_basisset.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/basisset.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_basisset.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 75%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/moc_mopacaux.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/moc_mopacaux.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_mopacaux.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 75%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/moc_molpro.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/moc_molpro.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molpro.cxx
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/distancecolor.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,distancecolor.so -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 76%] Built target distancecolor
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 97
[ 76%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/__/__/qtiocompressor/moc_qtiocompressor.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/__/__/qtiocompressor/moc_qtiocompressor.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/__/qtiocompressor/moc_qtiocompressor.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qiodevice.h:46,
                 from /usr/include/qt4/QtCore/QIODevice:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/__/qtiocompressor/../../../../../../../libavogadro/qtiocompressor/qtiocompressor.h:50,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/__/qtiocompressor/moc_qtiocompressor.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 75%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/moc_slaterset.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/moc_slaterset.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_slaterset.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/slaterset.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_slaterset.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 77%] Generating addenginedialog.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/addenginedialog.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 75%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors    -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_residuecolor.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_residuecolor.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 75%] Building CXX object libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/moc_vibrationdialog.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/vibrationextension.dir/moc_vibrationdialog.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationdialog.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vibrationdialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationdialog.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 71%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/slaterset.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/slaterset.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/slaterset.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/slaterset.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/slaterset.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 78%] Generating application.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/application.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 39
[ 77%] Generating avogadro_zh_TW.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-zh_TW.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_TW.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_TW.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_TW.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_TW.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 75%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions    -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vdwsurface.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vdwsurface.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vdwsurface.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 78%] Generating detachedview.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/detachedview.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 78%] Generating enginecolorswidget.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/enginecolorswidget.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 78%] Generating engineitemdelegate.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/engineitemdelegate.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 78%] Generating engineitemmodel.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/engineitemmodel.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 79%] Generating engineprimitiveswidget.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/engineprimitiveswidget.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 75%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors    -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/residuecolor.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/residuecolor.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/colors/residuecolor.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 27
[ 79%] Generating enginelistview.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/enginelistview.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 79%] Generating engineviewwidget.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/engineviewwidget.moc_parameters
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[ 79%] Generating flattabwidget.moc
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[ 79%] Generating glgraphicsview.moc
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Linking CXX shared module ../../../lib/vibrationextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1
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[ 79%] Generating importdialog.moc
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[ 79%] Built target vibrationextension
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[ 80%] Generating pluginitemmodel.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/pluginitemmodel.moc_parameters
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[ 80%] Generating pluginlistview.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/pluginlistview.moc_parameters
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[ 80%] Generating pluginsettings.moc
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[ 80%] Generating primitiveitemmodel.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/primitiveitemmodel.moc_parameters
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[ 80%] Generating primitivetreeview.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/primitivetreeview.moc_parameters
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[ 80%] Generating projecttreeeditor.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/projecttreeeditor.moc_parameters
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[ 81%] Generating projecttreemodel.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/projecttreemodel.moc_parameters
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Linking CXX shared module ../../../lib/surfaceextension.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,surfaceextension.so -o ../../../lib/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/basisset.cpp.o CMakeFiles/surfaceextension.dir/gaussianfchk.cpp.o CMakeFiles/surfaceextension.dir/slaterset.cpp.o CMakeFiles/surfaceextension.dir/mopacaux.cpp.o CMakeFiles/surfaceextension.dir/molpro.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/__/__/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_basisset.cxx.o CMakeFiles/surfaceextension.dir/moc_gaussianfchk.cxx.o CMakeFiles/surfaceextension.dir/moc_slaterset.cxx.o CMakeFiles/surfaceextension.dir/moc_mopacaux.cxx.o CMakeFiles/surfaceextension.dir/moc_molpro.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/__/__/qtiocompressor/moc_qtiocompressor.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lz -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
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[ 81%] Built target surfaceextension
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[ 81%] Generating projecttreemodeldelegate.moc
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[ 81%] Generating savedialog.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/savedialog.moc_parameters
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Linking CXX shared module ../../../lib/residuecolor.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,residuecolor.so -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o  -L/usr/lib/libGLEW.so  -L/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/..:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
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[ 81%] Generating settingsdialog.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/settingsdialog.moc_parameters
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[ 81%] Built target residuecolor
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[ 81%] Generating aboutdialog.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/aboutdialog.moc_parameters
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[ 82%] Generating atomdelegate.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/atomdelegate.moc_parameters
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[ 81%] Generating mainwindow.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/mainwindow.moc_parameters
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make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 82%] Generating bonddelegate.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/bonddelegate.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 82%] Generating labeldelegate.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/labeldelegate.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 82%] Generating moleculedelegate.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/moleculedelegate.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 82%] Generating residuedelegate.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/residuedelegate.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 82%] Generating selectiondelegate.moc
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/selectiondelegate.moc_parameters
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 31
[ 83%] Generating ui_addenginedialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_addenginedialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/addenginedialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 83%] Generating ui_enginecolorswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_enginecolorswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/enginecolorswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 83%] Generating ui_engineprimitiveswidget.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_engineprimitiveswidget.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineprimitiveswidget.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 83%] Generating ui_importdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_importdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/importdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 83%] Generating ui_pluginsettings.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_pluginsettings.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginsettings.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 83%] Generating ui_projecttreeeditor.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_projecttreeeditor.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreeeditor.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 83%] Generating ui_mainwindow.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_mainwindow.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/mainwindow.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 32
[ 84%] Generating ui_settingsdialog.h
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/uic -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_settingsdialog.h /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/settingsdialog.ui
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 84%] Generating qrc_avogadro.cxx
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/rcc -name avogadro -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/qrc_avogadro.cxx /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/avogadro.qrc
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 84%] Generating avogadro_af.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-af.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_af.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_af.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_af.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_af.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 84%] Generating avogadro_ar.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-ar.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ar.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ar.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ar.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ar.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 84%] Generating avogadro_bg.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-bg.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_bg.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_bg.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_bg.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_bg.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 75%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/animation.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/animation.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/animation.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 82%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/elementtranslator.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/elementtranslator.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/elementtranslator.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/elementtranslator.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 83%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/engine.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/engine.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/engine.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 84%] Generating avogadro_ca.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-ca.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ca.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ca.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ca.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ca.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
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[ 85%] Generating avogadro_cs.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-cs.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_cs.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_cs.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_cs.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_cs.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 85%] Generating avogadro_da.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-da.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_da.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_da.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_da.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_da.qm
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/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 33
[ 85%] Generating avogadro_ca@valencia.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-ca@valencia.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ca@valencia.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ca@valencia.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ca@valencia.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ca@valencia.qm
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cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_en_AU.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_en_AU.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_en_AU.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
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[ 85%] Generating avogadro_de.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-de.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_de.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_de.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_de.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_de.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 85%] Generating avogadro_el.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-el.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_el.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_el.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_el.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_el.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 34
[ 86%] Generating avogadro_en_CA.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-en_CA.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_en_CA.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_en_CA.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_en_CA.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_en_CA.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 86%] Generating avogadro_en_GB.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-en_GB.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_en_GB.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_en_GB.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_en_GB.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_en_GB.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 86%] Generating avogadro_es.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-es.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_es.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_es.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_es.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_es.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 86%] Generating avogadro_fi.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-fi.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_fi.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_fi.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_fi.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_fi.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 86%] Generating avogadro_eu.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-eu.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_eu.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_eu.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_eu.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_eu.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 86%] Generating avogadro_fr.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-fr.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_fr.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_fr.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_fr.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_fr.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 35
[ 87%] Generating avogadro_gl.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-gl.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_gl.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_gl.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_gl.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_gl.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 87%] Generating avogadro_hr.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-hr.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_hr.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_hr.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_hr.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_hr.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 87%] Generating avogadro_he.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-he.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_he.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_he.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_he.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_he.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 87%] Generating avogadro_hu.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-hu.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_hu.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_hu.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_hu.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_hu.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 87%] Generating avogadro_id.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-id.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_id.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_id.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_id.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_id.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 87%] Generating avogadro_it.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-it.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_it.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_it.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_it.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_it.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 89%] Generating avogadro_kn.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-kn.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_kn.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_kn.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_kn.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_kn.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 36
[ 89%] Generating avogadro_ja.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-ja.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ja.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ja.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ja.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ja.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 89%] Generating avogadro_nb.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-nb.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_nb.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_nb.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_nb.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_nb.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 89%] Generating avogadro_ko.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-ko.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ko.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ko.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ko.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ko.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 89%] Generating avogadro_nl.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-nl.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_nl.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_nl.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_nl.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_nl.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 89%] Generating avogadro_oc.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-oc.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_oc.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_oc.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_oc.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_oc.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 89%] Generating avogadro_pl.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-pl.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pl.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pl.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pl.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pl.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 37
[ 90%] Generating avogadro_pt.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-pt.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pt.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pt.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pt.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pt.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 90%] Generating avogadro_pt_BR.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-pt_BR.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pt_BR.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pt_BR.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pt_BR.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_pt_BR.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 90%] Generating avogadro_ru.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-ru.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ru.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ru.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ru.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ru.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 90%] Generating avogadro_sk.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-sk.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sk.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sk.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sk.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sk.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 90%] Generating avogadro_sr.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-sr.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sr.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sr.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sr.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sr.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 90%] Generating avogadro_sv.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-sv.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sv.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sv.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sv.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_sv.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 38
[ 91%] Generating avogadro_th.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-th.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_th.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_th.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_th.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_th.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Generating avogadro_tr.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-tr.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_tr.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_tr.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_tr.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_tr.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Generating avogadro_ug.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-ug.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ug.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ug.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ug.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_ug.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Generating avogadro_uk.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-uk.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_uk.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_uk.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_uk.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_uk.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Generating avogadro_vi.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-vi.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_vi.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_vi.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_vi.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_vi.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Generating avogadro_zh_CN.qm
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/i18n/avogadro-zh_CN.po -o /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_CN.ts
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_CN.ts
Scanning directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src'...
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_CN.ts -qm /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_CN.qm
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 80%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/eigen.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/eigen.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/eigen.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
In file included from /usr/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
                 from /usr/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /usr/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/eigen.cpp:3:
/usr/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 79%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/cube.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/cube.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/cube.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/cube.cpp:3:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color=
Scanning dependencies of target avogadro-app
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/addenginedialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qvariant.h:45,
                 from /usr/include/qt4/QtCore/QVariant:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_addenginedialog.h:12,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/addenginedialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/addenginedialog.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/application.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qcoreapplication.h:45,
                 from /usr/include/qt4/QtGui/qapplication.h:45,
                 from /usr/include/qt4/QtGui/QApplication:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/application.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/application.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/detachedview.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/QWidget:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/detachedview.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/detachedview.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/editcommands.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/editcommands.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtGui/qundostack.h:45,
                 from /usr/include/qt4/QtGui/QUndoCommand:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/editcommands.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/editcommands.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/enginecolorswidget.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qvariant.h:45,
                 from /usr/include/qt4/QtCore/QVariant:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_enginecolorswidget.h:12,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/enginecolorswidget.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/enginecolorswidget.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 40
[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineitemdelegate.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45,
                 from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45,
                 from /usr/include/qt4/QtGui/QStyledItemDelegate:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineitemdelegate.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineitemdelegate.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineitemmodel.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qvariant.h:45,
                 from /usr/include/qt4/QtCore/qabstractitemmodel.h:45,
                 from /usr/include/qt4/QtCore/QModelIndex:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineitemmodel.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineitemmodel.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 76
[ 78%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/camera.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/camera.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/camera.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/enginelistview.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qframe.h:45,
                 from /usr/include/qt4/QtGui/qabstractscrollarea.h:45,
                 from /usr/include/qt4/QtGui/qabstractitemview.h:45,
                 from /usr/include/qt4/QtGui/qlistview.h:45,
                 from /usr/include/qt4/QtGui/QListView:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/enginelistview.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/enginelistview.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 77%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/bond.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/bond.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/bond.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineprimitiveswidget.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qvariant.h:45,
                 from /usr/include/qt4/QtCore/QVariant:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_engineprimitiveswidget.h:12,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineprimitiveswidget.h:27,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineprimitiveswidget.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/flattabwidget.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/QObject:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/flattabwidget.h:26,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/flattabwidget.cpp:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineviewwidget.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/QWidget:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineviewwidget.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/engineviewwidget.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 41
[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/glgraphicsview.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qmetatype.h:45,
                 from /usr/include/qt4/QtGui/qgraphicsview.h:45,
                 from /usr/include/qt4/QtGui/QGraphicsView:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/glgraphicsview.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/glgraphicsview.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 77%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/atom.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/atom.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/atom.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginitemmodel.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/pluginmanager.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginitemmodel.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginitemmodel.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginitemmodel.cpp: In member function 'Avogadro::PluginItem* Avogadro::PluginItemModel::plugin(const QModelIndex&) const':
/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginitemmodel.cpp:126:14: warning: converting 'false' to pointer type 'Avogadro::PluginItem*' [-Wconversion-null]
       return false;
              ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginlistview.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/pluginmanager.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginlistview.h:27,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginlistview.cpp:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/importdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qvariant.h:45,
                 from /usr/include/qt4/QtCore/QVariant:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_importdialog.h:12,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/importdialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/importdialog.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginsettings.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/pluginmanager.h:30,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginlistview.h:27,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginsettings.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/pluginsettings.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/mesh.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/mesh.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/mesh.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 89%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/main.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/main.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/python2.7/Python.h:19,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/main.cpp:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/primitiveitemmodel.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qvariant.h:45,
                 from /usr/include/qt4/QtCore/qabstractitemmodel.h:45,
                 from /usr/include/qt4/QtCore/QAbstractItemModel:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/primitiveitemmodel.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/primitiveitemmodel.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/meshgenerator.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/meshgenerator.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 77
[ 89%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/fragment.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/fragment.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/fragment.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 85%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/extension.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/extension.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/extension.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreeitem.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreeitem.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreeitem.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreemodeldelegate.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreemodeldelegate.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreemodeldelegate.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreemodel.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreemodel.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreemodel.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 42
[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/primitivetreeview.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qframe.h:45,
                 from /usr/include/qt4/QtGui/qabstractscrollarea.h:45,
                 from /usr/include/qt4/QtGui/qabstractitemview.h:45,
                 from /usr/include/qt4/QtGui/qtreeview.h:45,
                 from /usr/include/qt4/QtGui/QTreeView:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/primitivetreeview.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/primitivetreeview.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreeeditor.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreeeditor.h:47,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projecttreeeditor.cpp:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/savedialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qchar.h:45,
                 from /usr/include/qt4/QtCore/qstring.h:45,
                 from /usr/include/qt4/QtCore/qdir.h:45,
                 from /usr/include/qt4/QtGui/qfiledialog.h:45,
                 from /usr/include/qt4/QtGui/QFileDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/savedialog.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/savedialog.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/settingsdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qatomic.h:45,
                 from /usr/include/qt4/QtCore/qvariant.h:45,
                 from /usr/include/qt4/QtCore/QVariant:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/ui_settingsdialog.h:12,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/settingsdialog.h:28,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/settingsdialog.cpp:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 43
[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/aboutdialog.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtGui/qwindowdefs.h:45,
                 from /usr/include/qt4/QtGui/qwidget.h:46,
                 from /usr/include/qt4/QtGui/qdialog.h:45,
                 from /usr/include/qt4/QtGui/QDialog:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/aboutdialog.h:23,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/aboutdialog.cpp:19:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/main.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/main.cpp:27:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/molecule.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/molecule.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/molecule.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/molecule.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/mainwindow.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/cstddef:44,
                 from /usr/include/eigen2/Eigen/Core:55,
                 from /usr/include/eigen2/Eigen/Geometry:4,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/mainwindow.h:27,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/mainwindow.cpp:24:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/atomdelegate.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/atomdelegate.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/atomdelegate.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/bonddelegate.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/bonddelegate.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/bonddelegate.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painterdevice.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/painterdevice.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/painterdevice.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/painterdevice.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/neighborlist.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/neighborlist.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/neighborlist.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/neighborlist.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painter.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/painter.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/painter.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/painter.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/periodictableview.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/periodictableview.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/periodictableview.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/periodictableview.cpp:3:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 78
[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/moleculelist.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/python2.7/Python.h:19,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/moleculelist.cpp:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/qrc_avogadro.cxx
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src/qrc_avogadro.cxx:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/navigate.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/navigate.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/navigate.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculefile.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/moleculefile.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/moleculefile.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/moleculefile.cpp:3:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 97%] Building C object avogadro/src/CMakeFiles/avogadro-app.dir/__/gl2ps/gl2ps.c.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-gcc  -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -O3 -DNDEBUG -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/__/gl2ps/gl2ps.c.o   -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c
In file included from /usr/include/stdio.h:27:0,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/gl2ps/gl2ps.h:39,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c:36:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/labeldelegate.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/labeldelegate.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/labeldelegate.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 44
[ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/moleculedelegate.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/moleculedelegate.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/moleculedelegate.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/selectiondelegate.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/selectiondelegate.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/selectiondelegate.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore    -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/residuedelegate.cpp
In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0,
                 from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430,
                 from /usr/include/c++/4.9.2/utility:68,
                 from /usr/include/c++/4.9.2/algorithm:60,
                 from /usr/include/qt4/QtCore/qglobal.h:68,
                 from /usr/include/qt4/QtCore/qnamespace.h:45,
                 from /usr/include/qt4/QtCore/qobjectdefs.h:45,
                 from /usr/include/qt4/QtCore/qobject.h:47,
                 from /usr/include/qt4/QtCore/qtranslator.h:45,
                 from /usr/include/qt4/QtCore/QTranslator:1,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/residuedelegate.h:25,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/avogadro/src/projectdelegates/residuedelegate.cpp:22:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/plugin.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/plugin.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/plugin.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/plugin.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX executable ../../bin/avogadro
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro-app.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++    -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT  -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o CMakeFiles/avogadro-app.dir/application.cpp.o CMakeFiles/avogadro-app.dir/detachedview.cpp.o CMakeFiles/avogadro-app.dir/editcommands.cpp.o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o CMakeFiles/avogadro-app.dir/importdialog.cpp.o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o CMakeFiles/avogadro-app.dir/main.cpp.o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/__/gl2ps/gl2ps.c.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o  -o ../../bin/avogadro -rdynamic -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore ../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[1]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles  27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44
[ 99%] Built target avogadro-app
make[1]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/toolgroup.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/toolgroup.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/toolgroup.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/python2.7/Python.h:19,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/toolgroup.cpp:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/tool.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/tool.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/tool.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/tool.cpp:3:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qstring.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/qstring.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/qstring.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/python2.7/Python.h:19,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/qstring.cpp:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 79
[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/pluginmanager.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/pluginmanager.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/pluginmanager.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/pluginmanager.cpp:3:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 80
[ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/swig.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/swig.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/swig.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/swig.cpp:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitive.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/primitive.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/primitive.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/primitive.cpp:3:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitivelist.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/primitivelist.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/primitivelist.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/primitivelist.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/residue.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/residue.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/residue.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/residue.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/std_vector.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/std_vector.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/std_vector.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/std_vector.cpp:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/color.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/color.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/color.cpp:3:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 81
[100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/sip.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/sip.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/sip.cpp:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qlist.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/qlist.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/qlist.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/qlist.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
/usr/bin/cmake -E cmake_progress_report /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/CMakeFiles 
[ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/i486-pld-linux-g++   -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/include -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3 -I/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python -I/usr/lib/python2.7/site-packages/numpy/core/include    -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/glwidget.cpp
In file included from /usr/include/limits.h:25:0,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:168,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/syslimits.h:7,
                 from /usr/lib/gcc/i486-pld-linux/4.9.2/include/limits.h:34,
                 from /usr/include/boost/python/detail/wrap_python.hpp:61,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/libavogadro/src/python/glwidget.cpp:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
make[2]: Entering directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
Linking CXX shared module ../../../lib/Avogadro.so
cd /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/python-module.dir/link.txt --verbose=1
/usr/bin/i486-pld-linux-g++  -fPIC  -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -shared -Wl,-soname,Avogadro.so -o ../../../lib/Avogadro.so CMakeFiles/python-module.dir/animation.cpp.o CMakeFiles/python-module.dir/atom.cpp.o CMakeFiles/python-module.dir/bond.cpp.o CMakeFiles/python-module.dir/camera.cpp.o CMakeFiles/python-module.dir/cube.cpp.o CMakeFiles/python-module.dir/eigen.cpp.o CMakeFiles/python-module.dir/elementtranslator.cpp.o CMakeFiles/python-module.dir/engine.cpp.o CMakeFiles/python-module.dir/extension.cpp.o CMakeFiles/python-module.dir/fragment.cpp.o CMakeFiles/python-module.dir/main.cpp.o CMakeFiles/python-module.dir/mesh.cpp.o CMakeFiles/python-module.dir/meshgenerator.cpp.o CMakeFiles/python-module.dir/molecule.cpp.o CMakeFiles/python-module.dir/moleculefile.cpp.o CMakeFiles/python-module.dir/moleculelist.cpp.o CMakeFiles/python-module.dir/navigate.cpp.o CMakeFiles/python-module.dir/neighborlist.cpp.o CMakeFiles/python-module.dir/painter.cpp.o CMakeFiles/python-module.dir/painterdevice.cpp.o CMakeFiles/python-module.dir/periodictableview.cpp.o CMakeFiles/python-module.dir/plugin.cpp.o CMakeFiles/python-module.dir/pluginmanager.cpp.o CMakeFiles/python-module.dir/primitive.cpp.o CMakeFiles/python-module.dir/primitivelist.cpp.o CMakeFiles/python-module.dir/qstring.cpp.o CMakeFiles/python-module.dir/residue.cpp.o CMakeFiles/python-module.dir/std_vector.cpp.o CMakeFiles/python-module.dir/swig.cpp.o CMakeFiles/python-module.dir/tool.cpp.o CMakeFiles/python-module.dir/toolgroup.cpp.o CMakeFiles/python-module.dir/color.cpp.o CMakeFiles/python-module.dir/glwidget.cpp.o CMakeFiles/python-module.dir/qlist.cpp.o CMakeFiles/python-module.dir/sip.cpp.o  -L/usr/lib/libGLEW.so -lstdc++ ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build/lib: 
CMakeFiles/python-module.dir/main.cpp.o: In function `initAvogadro':
main.cpp:(.text+0x2de): undefined reference to `boost::python::detail::init_module(char const*, void (*)())'
collect2: error: ld returned 1 exit status
libavogadro/src/python/CMakeFiles/python-module.dir/build.make:959: recipe for target 'lib/Avogadro.so' failed
make[2]: *** [lib/Avogadro.so] Error 1
make[2]: Leaving directory '/tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/avogadro-1.0.3/build'
CMakeFiles/Makefile2:2090: recipe for target 'libavogadro/src/python/CMakeFiles/python-module.dir/all' failed
make[1]: *** [libavogadro/src/python/CMakeFiles/python-module.dir/all] Error 2
Makefile:140: recipe for target 'all' failed
make: *** [all] Error 2
error: Bad exit status from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/tmp/rpm-tmp.97570 (%build)


RPM build errors:
    Bad exit status from /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD/tmp/rpm-tmp.97570 (%build)
ended at: Tue Feb 17 21:47:55 2015, done in 0:12:10.335373
error: No files produced.
+ chmod -R u+rwX /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD
+ rm -rf /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/tmp /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95/BUILD
+ rm -rf /tmp/B.c418acec-b0eb-4934-8fff-d0a8c8468d95
Begin-PLD-Builder-Info
Build-Time: user:1217.98s sys:407.84s real:743.13s (faults io:80370 non-io:14712539)

End-PLD-Builder-Info