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avogadro 0b089110-66fb-4136-a3c7-feac3d37243a

Status:OK
Source URL:https://buildlogs.pld-linux.org/pld/th/i486/OK/avogadro,0b089110-66fb-4136-a3c7-feac3d37243a.bz2
text/plain URL:View!
rpm -qa of builder:View!
Date:2015/02/19 09:25:16
Runtime:0:12:55.746673

Toc:

  • prep
  • Executing(%prep): /bin/sh -e /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp/rpm-tmp.65842
  • build
  • Executing(%build): /bin/sh -e /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp/rpm-tmp.51369
  • install
  • Executing(%install): /bin/sh -e /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp/rpm-tmp.32171
  • files avogadro
  • Processing files: avogadro-1.0.3-10.i486
  • doc
  • Executing(%doc): /bin/sh -e /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp/rpm-tmp.93713
  • files avogadro-libs
  • Processing files: avogadro-libs-1.0.3-10.i486
  • files avogadro-devel
  • Processing files: avogadro-devel-1.0.3-10.i486
  • files avogadro-debuginfo
  • Processing files: avogadro-debuginfo-1.0.3-10.i486
  • clean
  • Executing(%clean): /bin/sh -e /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp/rpm-tmp.33033

Content:

request from: baggins
checking if we should skip the build
started at: Thu Feb 19 09:12:01 2015
fetching https://srcbuilder.pld-linux.org/th//srpms/0b089110-66fb-4136-a3c7-feac3d37243a/avogadro-1.0.3-10.src.rpm
fetched 4985378 bytes, 5154.2 K/s
installing srpm: avogadro-1.0.3-10.src.rpm
+ install -d /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/RPMS
+ LC_ALL=en_US.UTF-8
+ rpm -qp --changelog avogadro-1.0.3-10.src.rpm
* Thu Feb 19 2015 PLD Linux Team <feedback@pld-linux.org>
- For complete changelog see: http://git.pld-linux.org/?p=packages/avogadro.git;a=log;h=master
* Thu Feb 19 2015 Jan Rękorajski <baggins@pld-linux.org> 8c25334
- rebuild with boost 1.57.0 - release 10 (by relup.sh) * Sat Oct 25 2014 Jan Rękorajski <baggins@pld-linux.org> 39c1482
- rebuild with boost 1.56.0 - release 9 (by relup.sh) + rpm -Uhv --nodeps --define '_topdir /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' avogadro-1.0.3-10.src.rpm Preparing... ################################################## avogadro ################################################## + rm -f avogadro-1.0.3-10.src.rpm + install -m 700 -d /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp + TMPDIR=/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp + exec nice -n 0 rpmbuild -bp --short-circuit --nodeps --define '_topdir /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target i486-pld-linux --define 'prep exit 0' /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/avogadro.spec Building target platforms: i486-pld-linux checking BuildConflict-ing packages no BuildConflicts found checking BR rpm: Building target platforms: i486-pld-linux no BR needed building RPM using: set -ex; : build-id: 0b089110-66fb-4136-a3c7-feac3d37243a; TMPDIR=/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target i486-pld-linux /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/avogadro.spec + : build-id: 0b089110-66fb-4136-a3c7-feac3d37243a + TMPDIR=/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp + exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target i486-pld-linux /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/avogadro.spec Building target platforms: i486-pld-linux Executing(%prep): /bin/sh -e /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp/rpm-tmp.65842 + umask 022 + cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD + cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD + rm -rf avogadro-1.0.3 + /usr/bin/bzip2 -dc /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/avogadro-1.0.3.tar.bz2 + /bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadro-1.0.3 + /bin/id -u + '[' 2001 '=' 0 ']' + /bin/id -u + '[' 2001 '=' 0 ']' + /bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (avogadro-linguist.patch):' Patch #0 (avogadro-linguist.patch): + '[' -f /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/avogadro-linguist.patch ']' + /bin/cat /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/avogadro-linguist.patch + /usr/bin/patch -s -p0 + echo 'Patch #1 (avogadro-cmake.patch):' Patch #1 (avogadro-cmake.patch): + '[' -f /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/avogadro-cmake.patch ']' + /bin/cat /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/avogadro-cmake.patch + /usr/bin/patch -s -p1 + echo 'Patch #2 (avogadro-moc-boost.patch):' Patch #2 (avogadro-moc-boost.patch): + '[' -f /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/avogadro-moc-boost.patch ']' + /bin/cat /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/avogadro-moc-boost.patch + /usr/bin/patch -s -p1 + exit 0 Executing(%build): /bin/sh -e /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp/rpm-tmp.51369 TMP=/home/users/builder/tmp HOME=/home/users/builder PATH=/home/users/builder/GNUstep/Tools:/usr/local/bin:/usr/bin:/bin:/home/users/builder/bin TMPDIR=/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/tmp + umask 022 + cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD + cd avogadro-1.0.3 + install -d build + cd build + CC=i486-pld-linux-gcc CXX=i486-pld-linux-g++ CPPFLAGS= /usr/bin/cmake '-DCMAKE_VERBOSE_MAKEFILE=ON' '-DCMAKE_BUILD_TYPE=PLD' '-DCMAKE_INSTALL_BINDIR:PATH=/usr/bin' '-DCMAKE_INSTALL_SBINDIR:PATH=/usr/sbin' '-DCMAKE_INSTALL_LIBEXECDIR:PATH=/usr/lib' '-DCMAKE_INSTALL_SYSCONFDIR:PATH=/etc' '-DCMAKE_INSTALL_SHAREDSTATEDIRPATH:PATH=/var/lib' '-DCMAKE_INSTALL_LOCALSTATEDIRPATH:PATH=/var' '-DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib' '-DCMAKE_INSTALL_INCLUDEDIR:PATH=/usr/include' '-DCMAKE_INSTALL_OLDINCLUDEDIR:PATH=/usr/include' '-DCMAKE_INSTALL_DATAROOTDIR:PATH=/usr/share' '-DCMAKE_INSTALL_DATADIR:PATH=/usr/share' '-DCMAKE_INSTALL_INFODIR:PATH=/usr/share/info' '-DCMAKE_INSTALL_LOCALEDIR:PATH=/usr/share/locale' '-DCMAKE_INSTALL_MANDIR:PATH=/usr/share/man' '-DCMAKE_INSTALL_DOCDIR:PATH=/usr/share/doc' '-DCMAKE_INSTALL_PREFIX:PATH=/usr' '-DSYSCONF_INSTALL_DIR:PATH=/etc' '-DCMAKE_CXX_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i486 -fasynchronous-unwind-tables -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_C_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i486 -fasynchronous-unwind-tables -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_Fortran_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i486 -fasynchronous-unwind-tables -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_EXE_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DCMAKE_SHARED_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DCMAKE_MODULE_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DBUILD_SHARED_LIBS:BOOL=ON' '-DENABLE_GLSL=ON' '-DENABLE_PYTHON=ON' '-DENABLE_UPDATE_CHECKER=OFF' '-DCMAKE_BUILD_TYPE=Release' .. -- The C compiler identification is GNU 4.9.2 -- The CXX compiler identification is GNU 4.9.2 -- Check for working C compiler: /usr/bin/i486-pld-linux-gcc -- Check for working C compiler: /usr/bin/i486-pld-linux-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/i486-pld-linux-g++ -- Check for working CXX compiler: /usr/bin/i486-pld-linux-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The build type is Release -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.6", minimum required is "4.5.1") -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/libX11.so -- Found OpenGL: /usr/lib/libGL.so -- Found lupdate: /usr/bin/lupdate-qt4 -- Found lrelease: /usr/bin/lrelease-qt4 -- Found lconvert: /usr/lib/qt4/bin/lconvert -- Found Eigen2: /usr/include/eigen2 -- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") -- checking for module 'openbabel-2.0>=2.2.2' -- found openbabel-2.0, version 2.3.2 -- Found OpenBabel 2.2 or later: openbabel -- Found OpenBabel2 executable: /usr/bin/babel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python -- Boost version: 1.57.0 -- Found the following Boost libraries: -- python -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/lib/libpython2.7.so -- [3/5] Python Interpreter -- Found PythonInterp: /usr/bin/python (found version "2.7.9") -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- Found sip.h header... -- All python dependencies found - Python support enabled -- GLEW found and GLSL support enabled -- Threaded OpenGL rendering not enabled -- RPath support enabled for installed binaries and libraries CMake Warning (dev) at CMakeLists.txt:358 (export_library_dependencies): Policy CMP0033 is not set: The export_library_dependencies command should not be called. Run "cmake --help-policy CMP0033" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Setting new boost python libraries -- Enabled python terminal -- Python site-packages directory: /usr/lib/python2.7/site-packages -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_PLD CMAKE_C_FLAGS_PLD CMAKE_EXE_LINKER_FLAGS_PLD CMAKE_Fortran_FLAGS_PLD CMAKE_INSTALL_BINDIR CMAKE_INSTALL_DATADIR CMAKE_INSTALL_DATAROOTDIR CMAKE_INSTALL_DOCDIR CMAKE_INSTALL_INCLUDEDIR CMAKE_INSTALL_INFODIR CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LIBEXECDIR CMAKE_INSTALL_LOCALEDIR CMAKE_INSTALL_LOCALSTATEDIRPATH CMAKE_INSTALL_MANDIR CMAKE_INSTALL_OLDINCLUDEDIR CMAKE_INSTALL_SBINDIR CMAKE_INSTALL_SHAREDSTATEDIRPATH CMAKE_INSTALL_SYSCONFDIR CMAKE_MODULE_LINKER_FLAGS_PLD CMAKE_SHARED_LINKER_FLAGS_PLD SYSCONF_INSTALL_DIR -- Build files have been written to: /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build + /usr/bin/make -Otarget -j9 /usr/bin/cmake -H/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 -B/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 0%] Generating qrc_pythontool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/rcc -name pythontool -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/qrc_pythontool.cxx /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythontool.qrc make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 1%] Generating elementtranslator.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/elementtranslator.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 1%] Generating elementdetail_p.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/elementdetail_p.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 1%] Generating extension.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extension.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 1%] Generating colorbutton.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colorbutton.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 1%] Generating color.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/color.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 6 [ 1%] Generating cube.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/cube.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 1%] Generating mesh.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/mesh.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 1%] Generating bond.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/bond.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 1%] Generating fragment.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/fragment.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 0%] Generating atom.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/atom.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 7 [ 2%] Generating periodictablescene_p.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/periodictablescene_p.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 2%] Generating plugin.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/plugin.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 2%] Generating plotwidget.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/plotwidget.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 2%] Generating periodictableview.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/periodictableview.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 8 [ 3%] Generating protein.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/protein.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 3%] Generating pluginmanager.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/pluginmanager.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 3%] Generating pythonerror.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/pythonerror.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 3%] Generating primitive.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/primitive.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 9 [ 4%] Generating zmatrix.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/zmatrix.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 3%] Generating tool.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tool.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 4%] Generating toolgroup.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/toolgroup.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 4%] Generating animation.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/animation.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 3%] Generating pythontool_p.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/pythontool_p.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 4%] Generating moleculefile.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/moleculefile.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 4%] Generating engine.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engine.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 4%] Generating glwidget.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/glwidget.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 3%] Generating pythonextension_p.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/pythonextension_p.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 10 [ 5%] Generating residue.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/residue.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 5%] Generating molecule.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/molecule.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 4%] Generating pythonengine_p.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/pythonengine_p.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 5%] Generating ui_bsdysettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/ui_bsdysettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/bsdysettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 5%] Generating elementcolor.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/elementcolor.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 5%] Generating bsdyengine.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/bsdyengine.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 5%] Generating libavogadro_bg.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-bg.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bg.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bg.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bg.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bg.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 12 [ 7%] Generating libavogadro_el.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-el.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_el.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_el.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_el.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_el.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 6%] Generating libavogadro_da.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-da.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_da.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_da.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_da.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_da.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 6%] Generating libavogadro_de.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-de.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_de.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_de.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_de.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_de.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 11 [ 6%] Generating libavogadro_bs.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-bs.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bs.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bs.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bs.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_bs.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 6%] Generating libavogadro_ca@valencia.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-ca@valencia.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca@valencia.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca@valencia.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca@valencia.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca@valencia.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 6%] Generating libavogadro_ca.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-ca.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ca.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 6%] Generating libavogadro_cs.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-cs.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_cs.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_cs.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_cs.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_cs.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 5%] Generating libavogadro_ar.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-ar.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ar.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ar.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ar.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ar.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 8%] Generating libavogadro_gl.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-gl.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_gl.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_gl.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_gl.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_gl.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 8%] Generating libavogadro_fr.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-fr.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fr.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fr.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fr.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fr.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 7%] Generating libavogadro_en_GB.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-en_GB.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_GB.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_GB.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_GB.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_GB.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 7%] Generating libavogadro_es.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-es.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_es.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_es.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_es.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_es.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 7%] Generating libavogadro_en_AU.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-en_AU.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_AU.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_AU.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_AU.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_AU.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 8%] Generating libavogadro_he.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-he.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_he.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_he.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_he.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_he.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 13 [ 8%] Generating libavogadro_fi.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-fi.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fi.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fi.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fi.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_fi.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 7%] Generating libavogadro_eu.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-eu.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_eu.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_eu.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_eu.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_eu.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 7%] Generating libavogadro_en_CA.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-en_CA.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_CA.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_CA.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_CA.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_en_CA.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 9%] Generating libavogadro_it.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-it.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_it.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_it.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_it.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_it.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 8%] Generating libavogadro_hi.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-hi.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hi.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hi.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hi.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hi.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 14 [ 9%] Generating libavogadro_id.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-id.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_id.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_id.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_id.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_id.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 9%] Generating libavogadro_ko.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-ko.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ko.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ko.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ko.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ko.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 8%] Generating libavogadro_hu.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-hu.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hu.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hu.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hu.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_hu.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 9%] Generating libavogadro_nb.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-nb.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nb.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nb.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nb.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nb.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 9%] Generating libavogadro_ja.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-ja.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ja.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ja.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ja.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ja.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 15 [ 10%] Generating libavogadro_nl.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-nl.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nl.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nl.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nl.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_nl.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 9%] Generating libavogadro_kn.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-kn.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_kn.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_kn.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_kn.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_kn.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 10%] Generating libavogadro_pl.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-pl.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pl.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pl.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pl.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pl.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 10%] Generating libavogadro_oc.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-oc.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_oc.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_oc.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_oc.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_oc.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 10%] Generating libavogadro_pt_BR.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-pt_BR.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt_BR.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt_BR.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt_BR.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt_BR.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 10%] Generating libavogadro_pt.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-pt.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_pt.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 10%] Generating libavogadro_ru.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-ru.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ru.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ru.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ru.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ru.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 10%] Generating libavogadro_sk.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-sk.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sk.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sk.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sk.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sk.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 16 [ 11%] Generating libavogadro_sr.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-sr.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sr.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sr.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sr.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sr.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 11%] Generating libavogadro_sv.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-sv.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sv.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sv.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sv.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_sv.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 11%] Generating libavogadro_tr.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-tr.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_tr.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_tr.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_tr.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_tr.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 11%] Generating libavogadro_ug.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-ug.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ug.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ug.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ug.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_ug.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 11%] Generating libavogadro_vi.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-vi.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_vi.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_vi.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_vi.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_vi.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 11%] Generating libavogadro_uk.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-uk.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_uk.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_uk.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_uk.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_uk.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 17 [ 12%] Generating libavogadro_zh_CN.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-zh_CN.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_CN.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_CN.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_CN.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 12%] Generating libavogadro_zh_TW.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/libavogadro-zh_TW.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_TW.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_TW.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src'... /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:728: Class 'Avogadro::ReadFileThread' lacks Q_OBJECT macro cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_TW.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/libavogadro_zh_TW.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/painter.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/painter.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/painter.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/painter.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/glhit.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/glhit.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/glhit.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/glhit.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotaxis.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotaxis.h:32, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotaxis.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 18 [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/idlist.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/idlist.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/idlist.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/navigate.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/navigate.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/navigate.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 19 [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/plotpoint.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotpoint.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotpoint.h:32, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotpoint.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/plotobject.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotobject.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotobject.h:32, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotobject.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/cylinder_p.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/cylinder_p.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/cylinder_p.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/primitivelist.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/primitivelist.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/primitivelist.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/undosequence.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/undosequence.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/undosequence.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/undosequence.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/neighborlist.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/neighborlist.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/neighborlist.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/camera.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/camera.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/camera.h:32, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/camera.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colorbutton.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colorbutton.h:31, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colorbutton.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/sphere_p.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/sphere_p.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/sphere_p.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/color.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/color.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/color.h:32, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/color.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 20 [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/atom.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/atom.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/atom.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/atom.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/extension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/bond.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/bond.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/bond.h:31, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/bond.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/cube.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/cube.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/cube.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/cube.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/elementtranslator.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/elementtranslator.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/elementtranslator.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/global.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/global.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/global.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/global.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/fragment.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/fragment.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/fragment.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/elementdetail_p.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/elementdetail_p.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/elementdetail_p.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 21 [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/elementitem_p.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/elementitem_p.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/elementitem_p.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/periodictableview.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/periodictableview.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/periodictableview.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/mesh.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/mesh.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/mesh.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/mesh.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/periodictablescene_p.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qgraphicsscene.h:45, from /usr/include/qt4/QtGui/QGraphicsScene:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/periodictablescene_p.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/periodictablescene_p.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/plugin.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plugin.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plugin.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 22 [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/meshgenerator.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/meshgenerator.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/meshgenerator.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 23 [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/primitive.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/primitive.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/primitive.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/primitive.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/glpainter_p.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/glpainter_p.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/glpainter_p.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/glpainter_p.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/plotwidget.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotwidget.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotwidget.h:32, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/plotwidget.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/textrenderer_p.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/textrenderer_p.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/textrenderer_p.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/protein.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/protein.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/protein.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/protein.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 24 [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/tool.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tool.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tool.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/pythonscript.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythonscript.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythonscript.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythonscript.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/toolgroup.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/toolgroup.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/toolgroup.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythoninterpreter.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythoninterpreter.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/zmatrix.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/zmatrix.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/zmatrix.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/zmatrix.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/moleculefile.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/residue.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/residue.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/residue.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/residue.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/engine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engine.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engine.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/animation.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/animation.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/animation.h:27, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/animation.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/pythonerror.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythonerror.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/pythonerror.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythonerror.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 26 [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/qrc_pythontool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/qrc_pythontool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythonextension_p.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythonextension_p.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythonextension_p.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colors/elementcolor.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/colors/elementcolor.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/elementcolor.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/elementcolor.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/elementcolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/pythontool_p.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythontool_p.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythontool_p.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythontool_p.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engines/bsdyengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/engines/bsdyengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/bsdyengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/bsdyengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/pluginmanager.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pluginmanager.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pluginmanager.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pluginmanager.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/molecule.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/molecule.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/molecule.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythonengine_p.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythonengine_p.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/pythonengine_p.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 25 [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/glwidget.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/glwidget.cpp:31: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared library ../../lib/libavogadro.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libavogadro.so.1 -o ../../lib/libavogadro.so.1.0.3 CMakeFiles/avogadro.dir/camera.cpp.o CMakeFiles/avogadro.dir/cylinder_p.cpp.o CMakeFiles/avogadro.dir/glhit.cpp.o CMakeFiles/avogadro.dir/idlist.cpp.o CMakeFiles/avogadro.dir/navigate.cpp.o CMakeFiles/avogadro.dir/neighborlist.cpp.o CMakeFiles/avogadro.dir/painter.cpp.o CMakeFiles/avogadro.dir/plotaxis.cpp.o CMakeFiles/avogadro.dir/plotobject.cpp.o CMakeFiles/avogadro.dir/plotpoint.cpp.o CMakeFiles/avogadro.dir/primitivelist.cpp.o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o CMakeFiles/avogadro.dir/pythonscript.cpp.o CMakeFiles/avogadro.dir/sphere_p.cpp.o CMakeFiles/avogadro.dir/undosequence.cpp.o CMakeFiles/avogadro.dir/atom.cpp.o CMakeFiles/avogadro.dir/bond.cpp.o CMakeFiles/avogadro.dir/color.cpp.o CMakeFiles/avogadro.dir/colorbutton.cpp.o CMakeFiles/avogadro.dir/cube.cpp.o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o CMakeFiles/avogadro.dir/elementitem_p.cpp.o CMakeFiles/avogadro.dir/elementtranslator.cpp.o CMakeFiles/avogadro.dir/extension.cpp.o CMakeFiles/avogadro.dir/fragment.cpp.o CMakeFiles/avogadro.dir/global.cpp.o CMakeFiles/avogadro.dir/glpainter_p.cpp.o CMakeFiles/avogadro.dir/mesh.cpp.o CMakeFiles/avogadro.dir/meshgenerator.cpp.o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o CMakeFiles/avogadro.dir/periodictableview.cpp.o CMakeFiles/avogadro.dir/plotwidget.cpp.o CMakeFiles/avogadro.dir/plugin.cpp.o CMakeFiles/avogadro.dir/pluginmanager.cpp.o CMakeFiles/avogadro.dir/primitive.cpp.o CMakeFiles/avogadro.dir/protein.cpp.o CMakeFiles/avogadro.dir/pythonerror.cpp.o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o CMakeFiles/avogadro.dir/pythontool_p.cpp.o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o CMakeFiles/avogadro.dir/tool.cpp.o CMakeFiles/avogadro.dir/toolgroup.cpp.o CMakeFiles/avogadro.dir/zmatrix.cpp.o CMakeFiles/avogadro.dir/moleculefile.cpp.o CMakeFiles/avogadro.dir/animation.cpp.o CMakeFiles/avogadro.dir/engine.cpp.o CMakeFiles/avogadro.dir/glwidget.cpp.o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o CMakeFiles/avogadro.dir/residue.cpp.o CMakeFiles/avogadro.dir/molecule.cpp.o CMakeFiles/avogadro.dir/engines/bsdyengine.cpp.o CMakeFiles/avogadro.dir/colors/elementcolor.cpp.o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -L/usr/lib/libGLEW.so -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so::::::::: cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src && /usr/bin/cmake -E cmake_symlink_library ../../lib/libavogadro.so.1.0.3 ../../lib/libavogadro.so.1 ../../lib/libavogadro.so make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 [ 21%] Built target avogadro make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/overlayengine.dir/build.make libavogadro/src/engines/CMakeFiles/overlayengine.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 21%] Generating ui_dipolesettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_dipolesettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/dipolesettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 67 [ 23%] Generating ui_labelsettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_labelsettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/labelsettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 47 [ 22%] Generating ui_cartoonsettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_cartoonsettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonsettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 21%] Generating ui_hbondsettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_hbondsettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/hbondsettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 21%] Generating ui_ribbonsettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_ribbonsettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/ribbonsettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 22%] Generating moc_forceengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_forceengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 21%] Generating moc_overlayengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_overlayengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 22%] Generating moc_polygonengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_polygonengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 21%] Generating moc_axesengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_axesengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 23%] Generating moc_labelengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_labelengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 23%] Generating moc_dipoleengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_dipoleengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 23%] Generating moc_hbondengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_hbondengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 83 [ 24%] Generating moc_ribbonengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ribbonengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 23%] Generating moc_cartoonengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_cartoonengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 24%] Generating moc_cartoonmeshgenerator.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_cartoonmeshgenerator.cxx_parameters /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonmeshgenerator.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= Scanning dependencies of target axesengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= Scanning dependencies of target labelengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= Scanning dependencies of target dipoleengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/overlayengine.dir/DependInfo.cmake --color= Scanning dependencies of target overlayengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= Scanning dependencies of target hbondengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= Scanning dependencies of target polygonengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= Scanning dependencies of target forceengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build /usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build /usr/bin/make -f libavogadro/src/engines/CMakeFiles/overlayengine.dir/build.make libavogadro/src/engines/CMakeFiles/overlayengine.dir/build /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= Scanning dependencies of target ribbonengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= Scanning dependencies of target cartoonengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/forceengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/forceengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/forceengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 72 [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/polygonengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/polygonengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 45 [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/axesengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/axesengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/axesengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/overlayengine.dir/overlayengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Doverlayengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/overlayengine.dir/overlayengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/overlayengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/overlayengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/overlayengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/dipoleengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/dipoleengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/dipoleengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/ribbonengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/ribbonengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/ribbonengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_forceengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/overlayengine.dir/moc_overlayengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Doverlayengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/overlayengine.dir/moc_overlayengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_overlayengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/overlayengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_overlayengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/labelengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/labelengine.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/labelengine.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_polygonengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_axesengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/hbondengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/hbondengine.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 50 [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_dipoleengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonengine.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonengine.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/forceengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,forceengine.so -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Built target forceengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/overlayengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/overlayengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,overlayengine.so -o ../../../lib/overlayengine.so CMakeFiles/overlayengine.dir/overlayengine.cpp.o CMakeFiles/overlayengine.dir/moc_overlayengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Generating ui_ringsettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_ringsettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/ringsettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Built target overlayengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/polygonengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,polygonengine.so -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/axesengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,axesengine.so -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 72 [ 27%] Built target polygonengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 45 [ 27%] Built target axesengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Generating moc_ringengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ringengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Generating moc_simplewireengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_simplewireengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Generating ui_sticksettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_sticksettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/sticksettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Generating ui_spheresettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_spheresettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/spheresettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= Scanning dependencies of target ringengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= Scanning dependencies of target simplewireengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_labelengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Generating moc_stickengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_stickengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Generating moc_sphereengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_sphereengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/dipoleengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,dipoleengine.so -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= Scanning dependencies of target stickengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 50 [ 28%] Built target dipoleengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= Scanning dependencies of target sphereengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 28%] Generating ui_surfacesettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_surfacesettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/surfacesettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 92 [ 29%] Generating moc_surfaceengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_surfaceengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/ribbonengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,ribbonengine.so -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 83 [ 29%] Built target ribbonengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 29%] Generating ui_wiresettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/ui_wiresettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/wiresettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/simplewireengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/simplewireengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/labelengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,labelengine.so -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 29%] Generating moc_wireengine.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_wireengine.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 67 [ 29%] Built target labelengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/hbondengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,hbondengine.so -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 29%] Built target hbondengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= Scanning dependencies of target wireengine make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 4 [ 30%] Generating qrc_autoopttool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name autoopttool -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autoopttool.cxx /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/autoopttool.qrc make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 29%] Generating qrc_aligntool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name aligntool -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_aligntool.cxx /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/aligntool.qrc make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 30%] Generating moc_aligntool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_aligntool.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= Scanning dependencies of target aligntool make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 30%] Generating moc_autoopttool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autoopttool.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= Scanning dependencies of target autoopttool make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 84 [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/ringengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/ringengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/ringengine.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonmeshgenerator.h:39, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/cartoonmeshgenerator.cpp:36: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_simplewireengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/stickengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/stickengine.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/stickengine.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/sphereengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/sphereengine.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/surfaceengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/surfaceengine.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ringengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/simplewireengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,simplewireengine.so -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 31%] Built target simplewireengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_cartoonengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 31%] Generating qrc_autorotatetool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name autorotatetool -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autorotatetool.cxx /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/autorotatetool.qrc make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonmeshgenerator.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/cartoonengine.dir/moc_cartoonmeshgenerator.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_cartoonmeshgenerator.cxx make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 31%] Generating moc_autorotatetool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autorotatetool.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target autorotatetool make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/wireengine.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/wireengine.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/engines/wireengine.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_surfaceengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_stickengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/ringengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,ringengine.so -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 84 [ 33%] Built target ringengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/aligntool.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/aligntool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/aligntool.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 33%] Generating qrc_bondcentrictool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name bondcentrictool -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_bondcentrictool.cxx /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/bondcentrictool.qrc make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 90 [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_sphereengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/autoopttool.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/autoopttool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 33%] Generating moc_bondcentrictool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/cartoonengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,cartoonengine.so -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o CMakeFiles/cartoonengine.dir/moc_cartoonmeshgenerator.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 47 [ 33%] Built target cartoonengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 33%] Generating moc_skeletontree.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_skeletontree.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 33%] Generating qrc_clickmeasuretool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name clickmeasuretool -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/clickmeasuretool.qrc make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= Scanning dependencies of target bondcentrictool make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_aligntool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/aligntool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_aligntool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 33%] Generating moc_clickmeasuretool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_aligntool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_aligntool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/surfaceengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,surfaceengine.so -o ../../../lib/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= Scanning dependencies of target clickmeasuretool make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 100 [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_wireengine.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 92 [ 33%] Built target surfaceengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 5 [ 32%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/autorotatetool.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/stickengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,stickengine.so -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 34%] Built target stickengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/sphereengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,sphereengine.so -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 51 [ 35%] Generating qrc_drawtool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name drawtool -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_drawtool.cxx /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawtool.qrc make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 90 [ 35%] Built target sphereengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Generating moc_drawtool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_drawtool.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Generating moc_drawcommand.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_drawcommand.cxx_parameters /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawcommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= Scanning dependencies of target drawtool make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autorotatetool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autorotatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/wireengine.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,wireengine.so -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/engines/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/aligntool.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,aligntool.so -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Built target aligntool make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 100 [ 35%] Built target wireengine make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autoopttool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Generating qrc_manipulatetool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name manipulatetool -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_manipulatetool.cxx /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/manipulatetool.qrc make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Generating moc_eyecandy.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_eyecandy.cxx_parameters /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Generating moc_manipulatetool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_manipulatetool.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autoopttool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_autoopttool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Generating qrc_navigatetool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name navigatetool -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_navigatetool.cxx /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/navigatetool.qrc make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= Scanning dependencies of target manipulatetool make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autorotatetool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Generating moc_navigatetool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_navigatetool.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 46 [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.h:33, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 36%] Generating ui_navigatesettingswidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/ui_navigatesettingswidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/navigatesettingswidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= Scanning dependencies of target navigatetool make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/clickmeasuretool.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/clickmeasuretool.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/clickmeasuretool.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawcommand.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawcommand.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/autoopttool.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,autoopttool.so -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 4 [ 37%] Built target autoopttool make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/autorotatetool.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,autorotatetool.so -o ../../../lib/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 5 [ 37%] Built target autorotatetool make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_bondcentrictool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:33, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:32, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawcommand.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/drawtool.dir/moc_drawcommand.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_drawcommand.cxx make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 37%] Generating qrc_selectrotatetool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name selectrotatetool -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_selectrotatetool.cxx /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/selectrotatetool.qrc make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 37%] Generating qrc_animation.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/rcc -name animation -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/qrc_animation.cxx /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animation.qrc make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 37%] Generating moc_selectrotatetool.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_drawtool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_drawtool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target selectrotatetool make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 37%] Generating moc_animationextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 1 [ 38%] Generating moc_animationdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/bondcentrictool.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.h:33, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/bondcentrictool.h:32, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_clickmeasuretool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_drawtool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_drawtool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Generating moc_povpainter.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povpainter.cxx_parameters /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_bondcentrictool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 68 [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/manipulatetool.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Generating moc_trajvideomaker.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_trajvideomaker.cxx_parameters /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/trajvideomaker.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawtool.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawtool.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/drawtool.cpp:28: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_selectrotatetool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Generating ui_animationdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_animationdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 70 [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnavigatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/navigatetool.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/navigatetool.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_skeletontree.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:33, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= Scanning dependencies of target animationextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_selectrotatetool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/clickmeasuretool.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,clickmeasuretool.so -o ../../../lib/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 40%] Built target clickmeasuretool make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 40%] Generating ui_fileimportdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_fileimportdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/fileimportdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/drawtool.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,drawtool.so -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/moc_drawcommand.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 51 [ 41%] Built target drawtool make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/bondcentrictool.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,bondcentrictool.so -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 46 [ 41%] Built target bondcentrictool make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gamessextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 41%] Generating ui_conformersearchdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_conformersearchdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/conformersearchdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 52 [ 41%] Generating moc_fileimportextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 57 [ 43%] Generating ui_gamessefpmatchdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_gamessefpmatchdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessefpmatchdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= Scanning dependencies of target fileimportextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_eyecandy.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/manipulatetool.dir/moc_eyecandy.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_eyecandy.cxx make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/cstddef:44, from /usr/include/eigen2/Eigen/Core:55, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 56 [ 44%] Generating moc_gamessextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 53 [ 42%] Generating moc_forcefieldextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Generating moc_gamessinputdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessinputdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Generating moc_forcefielddialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnavigatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/cstddef:44, from /usr/include/eigen2/Eigen/Core:55, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_manipulatetool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_manipulatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Generating moc_gamessinputdata.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessinputdata.cxx_parameters /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdata.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 85 [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/selectrotatetool.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/selectrotatetool.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/selectrotatetool.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_eyecandy.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnavigatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/navigatetool.dir/moc_eyecandy.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_eyecandy.cxx make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Generating moc_gamesshighlighter.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamesshighlighter.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Generating moc_constraintsdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 2 [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationdialog.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnavigatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_navigatetool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/qrc_navigatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Generating moc_gamessefpmatchdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessefpmatchdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Generating moc_constraintsmodel.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Generating ui_gamessinputdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_gamessinputdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Generating moc_conformersearchdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= Scanning dependencies of target gamessextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gamessextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Generating ui_forcefielddialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_forcefielddialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefielddialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 54 [ 45%] Generating ui_constraintsdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_constraintsdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/animationextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnavigatetool_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_navigatetool.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= Scanning dependencies of target forcefieldextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/manipulatetool.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,manipulatetool.so -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/moc_eyecandy.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 68 [ 45%] Built target manipulatetool make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/selectrotatetool.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,selectrotatetool.so -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 85 [ 45%] Built target selectrotatetool make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 45%] Generating moc_h2methylextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= Scanning dependencies of target h2methylextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 45%] Generating moc_hydrogensextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/DependInfo.cmake --color= Scanning dependencies of target hydrogenextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/trajvideomaker.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/trajvideomaker.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/trajvideomaker.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_povpainter.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/animationextension.dir/moc_povpainter.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povpainter.cxx make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/navigatetool.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,navigatetool.so -o ../../../lib/navigatetool.so CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/moc_eyecandy.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/tools/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 70 [ 47%] Built target navigatetool make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 3 [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_trajvideomaker.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/animationextension.dir/moc_trajvideomaker.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_trajvideomaker.cxx make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/fileimportextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/fileimportextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/fileimportextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 62 [ 48%] Generating ui_qcheminputdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_qcheminputdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/qcheminputdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 48%] Generating moc_inputfileextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_inputfileextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 48%] Generating moc_gaussianinputdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gaussianinputdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animation.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/animationextension.dir/qrc_animation.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/qrc_animation.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/qrc_animation.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_animationdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 48%] Generating ui_insertfragmentdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_insertfragmentdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 48%] Generating moc_molproinputdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molproinputdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 49%] Generating moc_mopacinputdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_mopacinputdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 64 [ 49%] Generating moc_insertfragmentextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 50%] Generating moc_insertfragmentdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 61 [ 50%] Generating moc_nwcheminputdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_nwcheminputdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/h2methylextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/h2methylextension.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/h2methylextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/moc_hydrogensextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogenextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/hydrogenextension.dir/moc_hydrogensextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_hydrogensextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 50%] Generating moc_insertcommand.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertcommand.cxx_parameters /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 50%] Generating moc_qcheminputdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_qcheminputdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertfragmentextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 51%] Generating ui_gaussianinputdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_gaussianinputdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianinputdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 60 [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/hydrogensextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogenextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/hydrogenextension.dir/hydrogensextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/hydrogensextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_fileimportextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_fileimportextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 51%] Generating ui_molproinputdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_molproinputdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molproinputdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 51%] Generating ui_mopacinputdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_mopacinputdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacinputdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 51%] Generating ui_nwcheminputdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_nwcheminputdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/nwcheminputdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/animationextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,animationextension.so -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/moc_povpainter.cxx.o CMakeFiles/animationextension.dir/moc_trajvideomaker.cxx.o CMakeFiles/animationextension.dir/qrc_animation.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 1 2 3 [ 51%] Built target animationextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= Scanning dependencies of target inputfileextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 59 [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_h2methylextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_h2methylextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 66 [ 52%] Generating ui_insertpeptidedialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_insertpeptidedialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertpeptidedialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 52%] Generating moc_insertpeptideextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertpeptideextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefieldextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefieldextension.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessextension.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessextension.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/hydrogenextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogenextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,hydrogenextension.so -o ../../../lib/hydrogenextension.so CMakeFiles/hydrogenextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogenextension.dir/moc_hydrogensextension.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 60 [ 52%] Built target hydrogenextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/fileimportextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,fileimportextension.so -o ../../../lib/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 52 [ 52%] Built target fileimportextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 52%] Generating ui_molecularpropdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_molecularpropdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molecularpropdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 52%] Generating moc_networkfetchextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_networkfetchextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/h2methylextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,h2methylextension.so -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 52%] Generating moc_molecularpropextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= Scanning dependencies of target networkfetchextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 59 [ 52%] Built target h2methylextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= Scanning dependencies of target molecularpropextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 53%] Generating ui_povraydialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_povraydialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povraydialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 54%] Generating moc_povrayextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povrayextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 54%] Generating moc_povraydialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povraydialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= Scanning dependencies of target povrayextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefielddialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/forcefielddialog.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/inputfileextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/inputfileextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/inputfileextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 71 [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/networkfetchextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/networkfetchextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/networkfetchextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdata.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/iostream:38, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdata.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdata.cpp:14: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 73 [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povrayextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povraydialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povrayextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povrayextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 69 [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molecularpropextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertpeptideextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertpeptideextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertpeptideextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_networkfetchextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_networkfetchextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/bits/stl_algobase.h:59, from /usr/include/c++/4.9.2/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentdialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molecularpropextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/networkfetchextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,networkfetchextension.so -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 71 [ 56%] Built target networkfetchextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianinputdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianinputdialog.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianinputdialog.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 65 [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamesshighlighter.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamesshighlighter.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamesshighlighter.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsmodel.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/bits/stl_algobase.h:59, from /usr/include/c++/4.9.2/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/molecularpropextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,molecularpropextension.so -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertcommand.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/insertpeptideextension.dir/moc_insertcommand.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertcommand.cxx make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 69 [ 57%] Built target molecularpropextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povpainter.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 57%] Generating moc_propextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 57%] Generating __/tools/moc_skeletontree.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/tools && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 74 [ 58%] Generating moc_propmodel.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propmodel.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= Scanning dependencies of target propextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/insertpeptideextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,insertpeptideextension.so -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o CMakeFiles/insertpeptideextension.dir/moc_insertcommand.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 66 [ 58%] Built target insertpeptideextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povraydialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povraydialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/povraydialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 55 [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/conformersearchdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/conformersearchdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessefpmatchdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessefpmatchdialog.h:27, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessefpmatchdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertcommand.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/insertfragmentextension.dir/moc_insertcommand.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_insertcommand.cxx make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefieldextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molproinputdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molproinputdialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molproinputdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefielddialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/insertfragmentextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,insertfragmentextension.so -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertcommand.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 64 65 [ 59%] Built target insertfragmentextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povrayextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povrayextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 59%] Generating ui_pythonterminalwidget.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_pythonterminalwidget.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/pythonterminalwidget.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.h:33, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povpainter.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/povrayextension.dir/moc_povpainter.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povpainter.cxx make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 59%] Generating moc_pythonterminal.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 59%] Generating moc_highlighter.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_highlighter.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= Scanning dependencies of target pythonterminal make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gamessinputdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gamessextension.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/bits/stl_algobase.h:59, from /usr/include/c++/4.9.2/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 58 [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessinputdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gamessinputdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessinputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessinputdata.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/gamessextension.dir/moc_gamessinputdata.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessinputdata.cxx make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povraydialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_povraydialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsmodel.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/bits/stl_algobase.h:59, from /usr/include/c++/4.9.2/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacinputdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacinputdialog.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacinputdialog.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdialog.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/povrayextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,povrayextension.so -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povpainter.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 73 [ 60%] Built target povrayextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamesshighlighter.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gamesshighlighter.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamesshighlighter.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 60%] Generating ui_shaderdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_shaderdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/shaderdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 60%] Generating moc_selectextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_selectextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= Scanning dependencies of target selectextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 60%] Generating moc_shaderextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_shaderextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propmodel.cpp In file included from /usr/include/math.h:26:0, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propmodel.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propmodel.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= Scanning dependencies of target shaderextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessefpmatchdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/primitive.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gamessefpmatchdialog.h:27, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gamessefpmatchdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/propextension.dir/propextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propextension.cpp In file included from /usr/include/math.h:26:0, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propmodel.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/propextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:33, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/nwcheminputdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/nwcheminputdialog.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/nwcheminputdialog.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/forcefieldextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,forcefieldextension.so -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 53 54 55 [ 61%] Built target forcefieldextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/CMakeFiles/spectraextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 61%] Generating ui_spectratabnmr.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_spectratabnmr.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratabnmr.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 63 [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/qcheminputdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/qcheminputdialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/qcheminputdialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/gamessextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,gamessextension.so -o ../../../lib/gamessextension.so CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdata.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 56 57 58 [ 61%] Built target gamessextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 61%] Generating moc_spectraextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectraextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 61%] Generating ui_supercelldialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_supercelldialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercelldialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 61%] Generating moc_supercellextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercellextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 61%] Generating moc_spectradialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectradialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 91 [ 62%] Generating moc_supercelldialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 87 [ 63%] Generating moc_spectratype.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= Scanning dependencies of target supercellextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 63%] Generating moc_spectratype_ir.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_ir.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 75 [ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propmodel.cxx In file included from /usr/include/math.h:26:0, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/selectextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/selectextension.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/selectextension.cpp:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 63%] Generating moc_spectratype_nmr.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_nmr.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 63%] Generating ui_spectradialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_spectradialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectradialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propextension.cxx In file included from /usr/include/math.h:26:0, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 63%] Generating ui_spectratabir.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_spectratabir.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratabir.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 63%] Generating ui_surfacedialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_surfacedialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfacedialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_inputfileextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/glwidget.h:30, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/inputfileextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_inputfileextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 63%] Generating moc_surfaceextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfaceextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= Scanning dependencies of target spectraextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/CMakeFiles/spectraextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/shaderextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/shaderextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/shaderextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gaussianinputdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gaussianinputdialog.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gaussianinputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 63%] Generating moc_surfacedialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfacedialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 93 [ 66%] Generating moc_basisset.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_basisset.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 66%] Generating moc_gaussianfchk.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gaussianfchk.cxx_parameters /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianfchk.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_selectextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/selectextension.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_selectextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 66%] Generating moc_slaterset.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_slaterset.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/propextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,propextension.so -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 66%] Generating moc_mopacaux.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_mopacaux.cxx_parameters /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacaux.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 74 75 [ 66%] Built target propextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 66%] Generating moc_molpro.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molpro.cxx_parameters /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molpro.h:0: Note: No relevant classes found. No output generated. make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 66%] Generating ui_unitcellparamdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_unitcellparamdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellparamdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 86 [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_shaderextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_shaderextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 66%] Generating moc_vdwsurface.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vdwsurface.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 66%] Generating moc_unitcellextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 94 [ 67%] Generating __/__/qtiocompressor/moc_qtiocompressor.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/__/qtiocompressor && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/__/__/qtiocompressor/moc_qtiocompressor.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molproinputdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molproinputdialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_molproinputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_mopacinputdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/mopacinputdialog.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_mopacinputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Generating moc_unitcellparamdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellparamdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/DependInfo.cmake --color= Scanning dependencies of target unitcellextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/selectextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,selectextension.so -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Built target selectextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/pythonterminal.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/pythonterminal.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Generating ui_vibrationdialog.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_vibrationdialog.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationdialog.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 88 [ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectraextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectraextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectradialog.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectraextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectraextension.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/shaderextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,shaderextension.so -o ../../../lib/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercellextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercellextension.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercellextension.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Generating moc_vibrationextension.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationextension.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 86 [ 67%] Built target shaderextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Generating moc_vibrationdialog.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationdialog.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Generating moc_atomindexcolor.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_nwcheminputdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/nwcheminputdialog.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_nwcheminputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= Scanning dependencies of target atomindexcolor make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= Scanning dependencies of target vibrationextension make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_qcheminputdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/qcheminputdialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_qcheminputdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/highlighter.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/highlighter.h:22, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/highlighter.cpp:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercellextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercellextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercelldialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_supercelldialog.h:12, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercelldialog.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/supercelldialog.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/unitcellextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dunitcellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/unitcellextension.dir/unitcellextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/inputfileextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,inputfileextension.so -o ../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 61 62 63 [ 69%] Built target inputfileextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 68%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercelldialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/ui_supercelldialog.h:12, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_supercelldialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/atomindexcolor.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/atomindexcolor.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/atomindexcolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfaceextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfacedialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfaceextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfaceextension.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 69%] Generating moc_chargecolor.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_chargecolor.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= Scanning dependencies of target chargecolor make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 68%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/unitcellparamdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dunitcellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/unitcellextension.dir/unitcellparamdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellparamdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellparamdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/unitcellparamdialog.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 69%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_atomindexcolor.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_atomindexcolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 98 [ 69%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/moc_unitcellextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dunitcellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/unitcellextension.dir/moc_unitcellextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/unitcellextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/supercellextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,supercellextension.so -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 91 [ 69%] Built target supercellextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationextension.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationextension.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 49 [ 70%] Generating moc_customcolor.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_customcolor.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= Scanning dependencies of target customcolor make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/atomindexcolor.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,atomindexcolor.so -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 71%] Built target atomindexcolor make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 69%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/moc_unitcellparamdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dunitcellextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/unitcellextension.dir/moc_unitcellparamdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellparamdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/unitcellparamdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_unitcellparamdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 69%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/chargecolor.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/chargecolor.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/chargecolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 69%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfacedialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfacedialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/surfacedialog.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 71%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/customcolor.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/customcolor.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/customcolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 48 [ 72%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_chargecolor.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_chargecolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 71%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_customcolor.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/../../../../libavogadro/src/colors/customcolor.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_customcolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 69%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/unitcellextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/unitcellextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,unitcellextension.so -o ../../../lib/unitcellextension.so CMakeFiles/unitcellextension.dir/unitcellextension.cpp.o CMakeFiles/unitcellextension.dir/unitcellparamdialog.cpp.o CMakeFiles/unitcellextension.dir/moc_unitcellextension.cxx.o CMakeFiles/unitcellextension.dir/moc_unitcellparamdialog.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 98 [ 72%] Built target unitcellextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Generating moc_distancecolor.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_distancecolor.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= Scanning dependencies of target distancecolor make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectradialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectradialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectradialog.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectradialog.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/customcolor.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,customcolor.so -o ../../../lib/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 49 [ 72%] Built target customcolor make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/chargecolor.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,chargecolor.so -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Generating ui_residuecolorsettings.h cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/uic -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/ui_residuecolorsettings.h /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/residuecolorsettings.ui make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 48 [ 72%] Built target chargecolor make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Generating moc_residuecolor.cxx cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_residuecolor.cxx_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 99 [ 71%] Building CXX object libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/vibrationdialog.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/vibrationextension.dir/vibrationdialog.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationdialog.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vibrationdialog.cpp:22: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Generating moleculelist.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/python && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/python/moleculelist.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= Scanning dependencies of target residuecolor make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/gaussianfchk.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/gaussianfchk.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianfchk.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianfchk.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/gaussianfchk.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/basisset.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/basisset.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/basisset.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/basisset.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/basisset.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/python /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/python /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= Scanning dependencies of target python-module make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/distancecolor.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/distancecolor.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/distancecolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype_ir.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/spectraextension.dir/spectratype_ir.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_ir.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_ir.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_ir.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vibrationdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vibrationextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype_nmr.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/spectraextension.dir/spectratype_nmr.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_nmr.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_nmr.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/spectratype_nmr.cpp:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_distancecolor.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_distancecolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/vibrationextension.dir/moc_vibrationdialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/vibrationextension.dir/moc_vibrationdialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationdialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vibrationdialog.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_vibrationdialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 82 [ 68%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_pythonterminal.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:26, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/residuecolor.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/residuecolor.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/colors/residuecolor.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/distancecolor.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,distancecolor.so -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 73%] Built target distancecolor make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 73%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_highlighter.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_highlighter.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectraextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectradialog.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectraextension.h:25, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectraextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 89 [ 73%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectradialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectradialog.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectradialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 73%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectratype.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/vibrationextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,vibrationextension.so -o ../../../lib/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationdialog.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationdialog.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 73%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_residuecolor.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/moc_residuecolor.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 99 [ 74%] Built target vibrationextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 39 [ 75%] Generating avogadro_zh_TW.qm cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/i18n/avogadro-zh_TW.po -o /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_TW.ts cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lupdate-qt4 /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/avogadro/src -silent -noobsolete -ts /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_TW.ts Scanning directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/avogadro/src'... cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_TW.ts -qm /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/avogadro_zh_TW.qm make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 75%] Generating addenginedialog.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/addenginedialog.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 75%] Generating application.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/application.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/slaterset.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/slaterset.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/slaterset.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/slaterset.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/slaterset.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 75%] Generating detachedview.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/detachedview.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/pythonterminal.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,pythonterminal.so -o ../../../lib/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 82 [ 75%] Built target pythonterminal make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 75%] Generating enginecolorswidget.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/enginecolorswidget.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 75%] Generating engineitemmodel.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/engineitemmodel.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/residuecolor.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,residuecolor.so -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/colors/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 76%] Built target residuecolor make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 75%] Generating engineitemdelegate.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/engineitemdelegate.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 76%] Generating engineprimitiveswidget.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/engineprimitiveswidget.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 27 [ 76%] Generating enginelistview.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/enginelistview.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 76%] Generating engineviewwidget.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/engineviewwidget.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 76%] Generating glgraphicsview.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/glgraphicsview.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 95 [ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/mopacaux.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/mopacaux.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacaux.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacaux.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/mopacaux.cpp:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 76%] Generating flattabwidget.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/flattabwidget.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 73%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype_ir.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/spectraextension.dir/moc_spectratype_ir.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_ir.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectratype_ir.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_ir.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 28 [ 77%] Generating pluginitemmodel.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/pluginitemmodel.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 76%] Generating importdialog.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/importdialog.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 77%] Generating pluginlistview.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/pluginlistview.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 77%] Generating pluginsettings.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/pluginsettings.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 77%] Generating primitiveitemmodel.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/primitiveitemmodel.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype_nmr.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/spectraextension.dir/moc_spectratype_nmr.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_nmr.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/spectratype_nmr.h:23, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_spectratype_nmr.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 77%] Generating primitivetreeview.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/primitivetreeview.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 76%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/__/__/qtiocompressor/qtiocompressor.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/__/__/qtiocompressor/qtiocompressor.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/qtiocompressor/qtiocompressor.h:50, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 77%] Generating projecttreeeditor.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/projecttreeeditor.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 29 [ 78%] Generating projecttreemodel.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/projecttreemodel.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 77%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfaceextension.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/surfacedialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/surfaceextension.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfaceextension.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 78%] Generating projecttreemodeldelegate.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/projecttreemodeldelegate.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 79%] Generating savedialog.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/savedialog.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 79%] Generating settingsdialog.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/settingsdialog.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 79%] Generating aboutdialog.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/aboutdialog.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 75%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/molpro.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/molpro.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molpro.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molpro.h:31, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/molpro.cpp:28: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 79%] Generating mainwindow.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/mainwindow.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' Linking CXX shared module ../../../lib/spectraextension.so cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 /usr/bin/i486-pld-linux-g++ -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,spectraextension.so -o ../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/spectratype_ir.cpp.o CMakeFiles/spectraextension.dir/spectratype_nmr.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype_ir.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype_nmr.cxx.o -L/usr/lib/libGLEW.so -L/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/.. ../../../lib/libavogadro.so.1.0.3 -lopenbabel -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python -Wl,-rpath,/usr/lib/libGLEW.so:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/..:/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/lib: make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 77%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfacedialog.cxx In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/surfacedialog.h:28, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_surfacedialog.cxx:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 79%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/moc_gaussianfchk.cxx.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/moc_gaussianfchk.cxx.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions/moc_gaussianfchk.cxx make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[1]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 87 88 89 [ 80%] Built target spectraextension make[1]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles 30 [ 80%] Generating atomdelegate.moc cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/avogadro/src/atomdelegate.moc_parameters make[2]: Leaving directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' make[2]: Entering directory '/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build' /usr/bin/cmake -E cmake_progress_report /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/CMakeFiles [ 76%] Building CXX object libavogadro/src/extensions/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o cd /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions && /usr/bin/i486-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/.. -I/tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/build/libavogadro/src/extensions -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vdwsurface.cpp In file included from /usr/include/c++/4.9.2/i486-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/4.9.2/i486-pld-linux/bits/c++config.h:430, from /usr/include/c++/4.9.2/utility:68, from /usr/include/c++/4.9.2/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vdwsurface.h:29, from /tmp/B.c0bc68b5-95dc-4c8d-a8b6-90d99f8c543f/BUILD/avogadro-1.0.3/libavogadro/src/extensions/vdwsurface.cpp:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_S