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avogadro cd6d9cbe-9ddc-4847-8271-e0297d5007c7

Status:Failed
Source URL:ftp://buildlogs.pld-linux.org/th/i686/FAIL/avogadro,cd6d9cbe-9ddc-4847-8271-e0297d5007c7.bz2
text/plain URL:View!
rpm -qa of builder:View!
Date:2017/04/13 16:40:54
Runtime:0:17:56.870881

Toc:

  • prep
  • Executing(%prep): /bin/sh -e /tmp/B.BsD903/BUILD/tmp/rpm-tmp.74042
  • build
  • Executing(%build): /bin/sh -e /tmp/B.BsD903/BUILD/tmp/rpm-tmp.56696
  • install
  • Executing(%install): /bin/sh -e /tmp/B.BsD903/BUILD/tmp/rpm-tmp.32847
  • error 1
  • error: Bad exit status from /tmp/B.BsD903/BUILD/tmp/rpm-tmp.32847 (%install)
  • error 2
  • RPM build errors:
  • error 3
  • error: No files produced.

Content:

request from: baggins
checking if we should skip the build
started at: Thu Apr 13 16:22:51 2017
fetching https://srcbuilder.pld-linux.org/th//srpms/cd6d9cbe-9ddc-4847-8271-e0297d5007c7/avogadro-1.2.0-3.src.rpm
fetched 16656562 bytes, 7552.0 K/s
installing srpm: avogadro-1.2.0-3.src.rpm
+ install -d /tmp/B.BsD903/BUILD /tmp/B.BsD903/RPMS
+ LC_ALL=en_US.UTF-8
+ rpm -qp --changelog avogadro-1.2.0-3.src.rpm
* Thu Apr 13 2017 PLD Linux Team <feedback@pld-linux.org>
- For complete changelog see: http://git.pld-linux.org/?p=packages/avogadro.git;a=log;h=master
* Thu Apr 13 2017 Jan Rękorajski <baggins@pld-linux.org> 8678fa6
- fix so libs attrs - rel 3 * Thu Apr 13 2017 Jan Rękorajski <baggins@pld-linux.org> 0d9da5e
- fix install of helper lib - rel 2 * Thu Apr 13 2017 Jan Rękorajski <baggins@pld-linux.org> cbab020
- rel 1 * Thu Apr 13 2017 Jan Rękorajski <baggins@pld-linux.org> 43ce3cb
- up to 1.2.0 * Mon May 16 2016 Elan Ruusamäe <glen@delfi.ee> 730ab34
- boost rebuild - release 17 (by relup.sh) + rpm -Uhv --nodeps --define '_topdir /tmp/B.BsD903' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' avogadro-1.2.0-3.src.rpm Preparing... ################################################## avogadro ################################################## + rm -f avogadro-1.2.0-3.src.rpm + install -m 700 -d /tmp/B.BsD903/BUILD/tmp + TMPDIR=/tmp/B.BsD903/BUILD/tmp + exec nice -n 0 rpmbuild -bp --short-circuit --nodeps --define '_topdir /tmp/B.BsD903' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target i686-pld-linux --define 'prep exit 0' /tmp/B.BsD903/avogadro.spec Building target platforms: i686-pld-linux checking BuildConflict-ing packages no BuildConflicts found checking BR rpm: Building target platforms: i686-pld-linux no BR needed building RPM using: set -ex; : build-id: cd6d9cbe-9ddc-4847-8271-e0297d5007c7; TMPDIR=/tmp/B.BsD903/BUILD/tmp exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.BsD903' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target i686-pld-linux /tmp/B.BsD903/avogadro.spec + : build-id: cd6d9cbe-9ddc-4847-8271-e0297d5007c7 + TMPDIR=/tmp/B.BsD903/BUILD/tmp + exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.BsD903' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target i686-pld-linux /tmp/B.BsD903/avogadro.spec Building target platforms: i686-pld-linux Executing(%prep): /bin/sh -e /tmp/B.BsD903/BUILD/tmp/rpm-tmp.74042 + umask 022 + cd /tmp/B.BsD903/BUILD + cd /tmp/B.BsD903/BUILD + rm -rf avogadro-1.2.0 + /usr/bin/gzip -dc /tmp/B.BsD903/avogadro-1.2.0.tar.gz + /bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadro-1.2.0 + /bin/id -u + '[' 1001 '=' 0 ']' + /bin/id -u + '[' 1001 '=' 0 ']' + /bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (avogadro-linguist.patch):' Patch #0 (avogadro-linguist.patch): + '[' -f /tmp/B.BsD903/avogadro-linguist.patch ']' + /bin/cat /tmp/B.BsD903/avogadro-linguist.patch + /usr/bin/patch -s -p0 + echo 'Patch #1 (avogadro-cmake.patch):' Patch #1 (avogadro-cmake.patch): + '[' -f /tmp/B.BsD903/avogadro-cmake.patch ']' + /bin/cat /tmp/B.BsD903/avogadro-cmake.patch + /usr/bin/patch -s -p1 + echo 'Patch #2 (avogadro-moc-boost.patch):' Patch #2 (avogadro-moc-boost.patch): + '[' -f /tmp/B.BsD903/avogadro-moc-boost.patch ']' + /bin/cat /tmp/B.BsD903/avogadro-moc-boost.patch + /usr/bin/patch -s -p1 + echo 'Patch #3 (gcc6.patch):' Patch #3 (gcc6.patch): + '[' -f /tmp/B.BsD903/gcc6.patch ']' + /bin/cat /tmp/B.BsD903/gcc6.patch + /usr/bin/patch -s -p1 + echo 'Patch #4 (python-install.patch):' Patch #4 (python-install.patch): + '[' -f /tmp/B.BsD903/python-install.patch ']' + /bin/cat /tmp/B.BsD903/python-install.patch + /usr/bin/patch -s -p1 + exit 0 Executing(%build): /bin/sh -e /tmp/B.BsD903/BUILD/tmp/rpm-tmp.56696 TMP=/home/users/builder/tmp HOME=/home/users/builder PATH=/home/users/builder/GNUstep/Tools:/usr/local/bin:/usr/bin:/bin:/home/users/builder/bin TMPDIR=/tmp/B.BsD903/BUILD/tmp + umask 022 + cd /tmp/B.BsD903/BUILD + cd avogadro-1.2.0 + install -d build + cd build + CC=i686-pld-linux-gcc CXX=i686-pld-linux-g++ CPPFLAGS= /usr/bin/cmake '-DCMAKE_VERBOSE_MAKEFILE=ON' '-DCMAKE_BUILD_TYPE=PLD' '-DCMAKE_INSTALL_BINDIR:PATH=/usr/bin' '-DCMAKE_INSTALL_SBINDIR:PATH=/usr/sbin' '-DCMAKE_INSTALL_LIBEXECDIR:PATH=/usr/lib' '-DCMAKE_INSTALL_SYSCONFDIR:PATH=/etc' '-DCMAKE_INSTALL_SHAREDSTATEDIRPATH:PATH=/var/lib' '-DCMAKE_INSTALL_LOCALSTATEDIRPATH:PATH=/var' '-DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib' '-DCMAKE_INSTALL_INCLUDEDIR:PATH=/usr/include' '-DCMAKE_INSTALL_OLDINCLUDEDIR:PATH=/usr/include' '-DCMAKE_INSTALL_DATAROOTDIR:PATH=/usr/share' '-DCMAKE_INSTALL_DATADIR:PATH=/usr/share' '-DCMAKE_INSTALL_INFODIR:PATH=/usr/share/info' '-DCMAKE_INSTALL_LOCALEDIR:PATH=/usr/share/locale' '-DCMAKE_INSTALL_MANDIR:PATH=/usr/share/man' '-DCMAKE_INSTALL_DOCDIR:PATH=/usr/share/doc' '-DCMAKE_INSTALL_PREFIX:PATH=/usr' '-DSYSCONF_INSTALL_DIR:PATH=/etc' '-DCMAKE_CXX_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_C_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_Fortran_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_EXE_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DCMAKE_SHARED_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DCMAKE_MODULE_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DBUILD_SHARED_LIBS:BOOL=ON' '-DENABLE_GLSL=ON' '-DENABLE_PYTHON=ON' '-DENABLE_UPDATE_CHECKER=OFF' '-DCMAKE_BUILD_TYPE=Release' .. -- The C compiler identification is GNU 6.3.0 -- The CXX compiler identification is GNU 6.3.0 -- Check for working C compiler: /usr/bin/i686-pld-linux-gcc -- Check for working C compiler: /usr/bin/i686-pld-linux-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/i686-pld-linux-g++ -- Check for working CXX compiler: /usr/bin/i686-pld-linux-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The build type is Release -- Performing Test HAVE_NO_RTTI -- Performing Test HAVE_NO_RTTI - Success -- Performing Test HAVE_RTTI -- Performing Test HAVE_RTTI - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.7", minimum required is "4.6.0") -- Found OpenGL: /usr/lib/libGL.so -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/libX11.so -- Found lupdate: /usr/bin/lupdate-qt4 -- Found lrelease: /usr/bin/lrelease-qt4 -- Found lconvert: /usr/lib/qt4/bin/lconvert -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'openbabel-2.0>=2.3.0' -- Found openbabel-2.0, version 2.3.90 -- Found OpenBabel 2.3 or later: openbabel -- Found OpenBabel2 executable: /usr/bin/babel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python -- Boost version: 1.63.0 -- Found the following Boost libraries: -- python -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/lib/libpython2.7.so -- [3/5] Python Interpreter -- Found PythonInterp: /usr/bin/python (found version "2.7.13") -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- SIP version 267008 found -- Found SIP: /usr/include/python2.7 -- All python dependencies found - Python support enabled -- GLEW found and GLSL support enabled -- Threaded OpenGL rendering not enabled -- RPath support enabled for installed binaries and libraries -- Setting new boost python libraries failed to create symbolic link '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro//tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/config.h': No such file or directory -- Enabled python terminal -- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.7", minimum required is "4.6") -- Linking in static plugins: bsdyengine;navigatetool;elementcolor -- Python site-packages directory: /usr/lib/python2.7/site-packages -- Found Doxygen: /usr/bin/doxygen (found version "1.8.8") -- Configuring done CMake Warning (dev) in libavogadro/src/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "avogadro" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: openbabel;/usr/lib/libQtOpenGL.so;/usr/lib/libQtGui.so;/usr/lib/libQtCore.so;/usr/lib/libGLU.so;/usr/lib/libGL.so;/usr/lib/libGLEW.so;/usr/lib/libpython2.7.so;/usr/lib/libboost_python.so;bsdyengine;navigatetool;elementcolor LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in libavogadro/src/extensions/surfaces/openqube/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "OpenQube" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: $<$<NOT:$<CONFIG:DEBUG>>:/usr/lib/libQtCore.so>;$<$<CONFIG:DEBUG>:/usr/lib/libQtCore.so>;$<$<NOT:$<CONFIG:DEBUG>>:/usr/lib/libQtGui.so>;$<$<CONFIG:DEBUG>:/usr/lib/libQtGui.so> LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_PLD CMAKE_C_FLAGS_PLD CMAKE_EXE_LINKER_FLAGS_PLD CMAKE_Fortran_FLAGS_PLD CMAKE_INSTALL_BINDIR CMAKE_INSTALL_DATADIR CMAKE_INSTALL_DATAROOTDIR CMAKE_INSTALL_DOCDIR CMAKE_INSTALL_INCLUDEDIR CMAKE_INSTALL_INFODIR CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LIBEXECDIR CMAKE_INSTALL_LOCALEDIR CMAKE_INSTALL_LOCALSTATEDIRPATH CMAKE_INSTALL_MANDIR CMAKE_INSTALL_OLDINCLUDEDIR CMAKE_INSTALL_SBINDIR CMAKE_INSTALL_SHAREDSTATEDIRPATH CMAKE_INSTALL_SYSCONFDIR CMAKE_MODULE_LINKER_FLAGS_PLD CMAKE_SHARED_LINKER_FLAGS_PLD SYSCONF_INSTALL_DIR -- Build files have been written to: /tmp/B.BsD903/BUILD/avogadro-1.2.0/build + /usr/bin/make -Otarget -j9 -j1 /usr/bin/cmake -H/tmp/B.BsD903/BUILD/avogadro-1.2.0 -B/tmp/B.BsD903/BUILD/avogadro-1.2.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/CMakeFiles /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 0%] Generating moc_elementcolor.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_elementcolor.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colors /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= Scanning dependencies of target elementcolor make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 0%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 0%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_elementcolor.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/../../../../libavogadro/src/colors/elementcolor.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_elementcolor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 0%] Linking CXX static library elementcolor.a cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 /usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o /usr/bin/ranlib elementcolor.a make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 0%] Built target elementcolor /usr/bin/make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 0%] Generating ui_bsdysettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_bsdysettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdysettingswidget.ui [ 0%] Generating moc_bsdyengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= Scanning dependencies of target bsdyengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 0%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 0%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 0%] Linking CXX static library bsdyengine.a cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 /usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o /usr/bin/ranlib bsdyengine.a make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 0%] Built target bsdyengine /usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 0%] Generating qrc_navigatetool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name navigatetool -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_navigatetool.cxx /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.qrc [ 0%] Generating moc_navigatetool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx_parameters [ 0%] Generating ui_navigatesettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/ui_navigatesettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatesettingswidget.ui cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= Scanning dependencies of target navigatetool make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 0%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 0%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/complex:41, from /usr/include/eigen3/Eigen/Core:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/c++/6.3.0/bits/locale_classes.h:40, from /usr/include/c++/6.3.0/bits/ios_base.h:41, from /usr/include/c++/6.3.0/ios:42, from /usr/include/c++/6.3.0/istream:38, from /usr/include/c++/6.3.0/sstream:38, from /usr/include/c++/6.3.0/complex:45, from /usr/include/eigen3/Eigen/Core:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/c++/6.3.0/bits/locale_classes.h:40, from /usr/include/c++/6.3.0/bits/ios_base.h:41, from /usr/include/c++/6.3.0/ios:42, from /usr/include/c++/6.3.0/istream:38, from /usr/include/c++/6.3.0/sstream:38, from /usr/include/c++/6.3.0/complex:45, from /usr/include/eigen3/Eigen/Core:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_navigatetool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_navigatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 1%] Linking CXX static library navigatetool.a cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 /usr/bin/ar qc navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o /usr/bin/ranlib navigatetool.a make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 1%] Built target navigatetool /usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 1%] Generating qrc_pythontool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/rcc -name pythontool -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/qrc_pythontool.cxx /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythontool.qrc [ 1%] Generating moc_animation.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx_parameters [ 1%] Generating moc_atom.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx_parameters [ 1%] Generating moc_bond.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx_parameters [ 2%] Generating moc_color.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_color.cxx_parameters [ 2%] Generating moc_colorbutton.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_colorbutton.cxx_parameters [ 2%] Generating moc_cube.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx_parameters [ 2%] Generating moc_dockextension.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockextension.cxx_parameters [ 2%] Generating moc_dockwidget.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockwidget.cxx_parameters [ 2%] Generating moc_elementdetail_p.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementdetail_p.cxx_parameters [ 2%] Generating moc_elementtranslator.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementtranslator.cxx_parameters [ 2%] Generating moc_engine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx_parameters [ 2%] Generating moc_extension.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_extension.cxx_parameters [ 3%] Generating moc_fragment.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx_parameters [ 3%] Generating moc_glwidget.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx_parameters [ 3%] Generating moc_mesh.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx_parameters [ 3%] Generating moc_meshgenerator.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx_parameters [ 3%] Generating moc_molecule.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx_parameters [ 3%] Generating moc_moleculefile.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx_parameters [ 3%] Generating moc_periodictablescene_p.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictablescene_p.cxx_parameters [ 3%] Generating moc_periodictableview.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictableview.cxx_parameters [ 3%] Generating moc_plotwidget.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plotwidget.cxx_parameters [ 3%] Generating moc_plugin.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plugin.cxx_parameters [ 4%] Generating moc_pluginmanager.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pluginmanager.cxx_parameters [ 4%] Generating moc_primitive.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx_parameters [ 4%] Generating moc_protein.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_protein.cxx_parameters [ 4%] Generating moc_readfilethread_p.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_readfilethread_p.cxx_parameters [ 4%] Generating moc_residue.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx_parameters [ 4%] Generating moc_textmatrixeditor.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx_parameters [ 4%] Generating moc_tool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_tool.cxx_parameters [ 4%] Generating moc_toolgroup.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_toolgroup.cxx_parameters [ 4%] Generating moc_zmatrix.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_zmatrix.cxx_parameters [ 4%] Generating moc_pythonengine_p.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx_parameters [ 5%] Generating moc_pythonerror.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonerror.cxx_parameters [ 5%] Generating moc_pythonextension_p.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx_parameters [ 5%] Generating moc_pythontool_p.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythontool_p.cxx_parameters [ 5%] Generating libavogadro_ar.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/ar.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ar.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ar.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ar.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ar.qm [ 5%] Generating libavogadro_bg.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/bg.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_bg.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_bg.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_bg.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_bg.qm [ 5%] Generating libavogadro_bs.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/bs.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_bs.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_bs.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_bs.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_bs.qm [ 5%] Generating libavogadro_ca.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/ca.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ca.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ca.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ca.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ca.qm [ 5%] Generating libavogadro_ca@valencia.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/ca@valencia.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ca@valencia.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ca@valencia.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ca@valencia.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ca@valencia.qm [ 5%] Generating libavogadro_cs.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/cs.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_cs.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_cs.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_cs.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_cs.qm [ 6%] Generating libavogadro_da.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/da.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_da.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_da.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_da.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_da.qm [ 6%] Generating libavogadro_de.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/de.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_de.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_de.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_de.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_de.qm [ 6%] Generating libavogadro_el.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/el.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_el.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_el.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_el.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_el.qm [ 6%] Generating libavogadro_en_AU.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/en_AU.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_AU.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_AU.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_AU.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_AU.qm [ 6%] Generating libavogadro_en_CA.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/en_CA.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_CA.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_CA.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_CA.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_CA.qm [ 6%] Generating libavogadro_en_GB.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/en_GB.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_GB.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_GB.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_GB.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_en_GB.qm [ 6%] Generating libavogadro_es.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/es.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_es.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_es.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_es.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_es.qm [ 6%] Generating libavogadro_et.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/et.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_et.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_et.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_et.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_et.qm [ 6%] Generating libavogadro_eu.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/eu.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_eu.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_eu.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_eu.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_eu.qm [ 6%] Generating libavogadro_fi.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/fi.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_fi.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_fi.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_fi.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_fi.qm [ 7%] Generating libavogadro_fr.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/fr.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_fr.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_fr.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_fr.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_fr.qm [ 7%] Generating libavogadro_gl.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/gl.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_gl.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_gl.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_gl.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_gl.qm [ 7%] Generating libavogadro_he.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/he.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_he.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_he.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_he.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_he.qm [ 7%] Generating libavogadro_hi.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/hi.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_hi.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_hi.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_hi.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_hi.qm [ 7%] Generating libavogadro_hu.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/hu.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_hu.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_hu.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_hu.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_hu.qm [ 7%] Generating libavogadro_id.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/id.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_id.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_id.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_id.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_id.qm [ 7%] Generating libavogadro_it.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/it.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_it.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_it.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_it.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_it.qm [ 7%] Generating libavogadro_ja.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/ja.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ja.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ja.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ja.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ja.qm [ 7%] Generating libavogadro_kn.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/kn.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_kn.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_kn.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_kn.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_kn.qm [ 8%] Generating libavogadro_ko.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/ko.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ko.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ko.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ko.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ko.qm [ 8%] Generating libavogadro_ms.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/ms.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ms.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ms.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ms.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ms.qm [ 8%] Generating libavogadro_nb.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/nb.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_nb.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_nb.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_nb.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_nb.qm [ 8%] Generating libavogadro_nl.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/nl.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_nl.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_nl.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_nl.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_nl.qm [ 8%] Generating libavogadro_oc.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/oc.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_oc.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_oc.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_oc.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_oc.qm [ 8%] Generating libavogadro_pl.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/pl.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pl.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pl.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pl.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pl.qm [ 8%] Generating libavogadro_pt.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/pt.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pt.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pt.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pt.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pt.qm [ 8%] Generating libavogadro_pt_BR.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/pt_BR.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pt_BR.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pt_BR.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pt_BR.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_pt_BR.qm [ 8%] Generating libavogadro_ru.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/ru.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ru.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ru.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ru.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ru.qm [ 8%] Generating libavogadro_sk.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/sk.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sk.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sk.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sk.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sk.qm [ 9%] Generating libavogadro_sl.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/sl.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sl.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sl.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sl.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sl.qm [ 9%] Generating libavogadro_sq.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/sq.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sq.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sq.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sq.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sq.qm [ 9%] Generating libavogadro_sr.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/sr.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sr.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sr.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sr.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sr.qm [ 9%] Generating libavogadro_sv.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/sv.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sv.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sv.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sv.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_sv.qm [ 9%] Generating libavogadro_th.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/th.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_th.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_th.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_th.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_th.qm [ 9%] Generating libavogadro_tr.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/tr.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_tr.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_tr.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_tr.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_tr.qm [ 9%] Generating libavogadro_ug.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/ug.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ug.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ug.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ug.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_ug.qm [ 9%] Generating libavogadro_uk.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/uk.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_uk.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_uk.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_uk.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_uk.qm [ 9%] Generating libavogadro_vi.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/vi.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_vi.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_vi.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_vi.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_vi.qm [ 10%] Generating libavogadro_zh_CN.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/zh_CN.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_zh_CN.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_zh_CN.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_zh_CN.qm [ 10%] Generating libavogadro_zh_TW.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/lib/qt4/bin/lconvert -i /tmp/B.BsD903/BUILD/avogadro-1.2.0/i18n/libavogadro/zh_TW.po -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_zh_TW.ts cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lupdate-qt4 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_zh_TW.ts Scanning directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src'... cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_zh_TW.ts -qm /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/libavogadro_zh_TW.qm cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/animation.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/atom.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/bond.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/color.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/color.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/color.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/color.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colorbutton.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colorbutton.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/colorbutton.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/cube.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/dockextension.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/dockextension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/dockextension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockwidget.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/dockwidget.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/dockwidget.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/dockwidget.h:21, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/dockwidget.cpp:18: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/elementdetail_p.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/elementitem_p.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/elementitem_p.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/elementitem_p.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/elementtranslator.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/engine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/extension.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extension.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/glhit.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glhit.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glhit.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glhit.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/global.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/global.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/glpainter_p.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/painter.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/painter.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/painter.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/mesh.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/neighborlist.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/neighborlist.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/neighborlist.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/neighborlist.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/neighborlist.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/neighborlist.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/painter.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qgraphicsscene.h:45, from /usr/include/qt4/QtGui/QGraphicsScene:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotobject.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotpoint.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotwidget.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plotaxis.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plugin.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plugin.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/plugin.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pluginmanager.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:32: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:32: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:32: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/primitive.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/protein.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/protein.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/protein.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/protein.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/readfilethread_p.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:23: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:23: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/residue.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/tool.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tool.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tool.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/undosequence.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/zmatrix.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:31: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:31: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:31: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonscript.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonerror.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonerror.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/pythonerror.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonerror.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythontool_p.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/navigate.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/navigate.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:29: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/navigate.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:29: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/animation.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/animation.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/animation.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/animation.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/animation.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/animation.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_atom.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_atom.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_bond.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_bond.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/bond.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_color.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_color.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_color.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/color.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_color.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_colorbutton.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/colorbutton.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_colorbutton.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_cube.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_cube.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/cube.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockextension.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockextension.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/dockextension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockwidget.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/dockwidget.h:21, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockwidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementdetail_p.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/elementdetail_p.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementdetail_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementtranslator.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/elementtranslator.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementtranslator.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_engine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_engine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/engine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/engine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/engine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_extension.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_extension.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_extension.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_extension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_fragment.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_fragment.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_mesh.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_mesh.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/meshgenerator.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/meshgenerator.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/meshgenerator.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/meshgenerator.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/meshgenerator.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/meshgenerator.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_molecule.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_molecule.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/moleculefile.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/moleculefile.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/moleculefile.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/moleculefile.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/moleculefile.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/moleculefile.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictablescene_p.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qgraphicsscene.h:45, from /usr/include/qt4/QtGui/QGraphicsScene:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/periodictablescene_p.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictablescene_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictableview.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/periodictableview.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictableview.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plotwidget.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plotaxis.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plotwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plotwidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plugin.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_plugin.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plugin.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plugin.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pluginmanager.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pluginmanager.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pluginmanager.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_protein.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_protein.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/protein.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_protein.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_readfilethread_p.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/readfilethread_p.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_readfilethread_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/residue.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_tool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_tool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_toolgroup.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/toolgroup.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_toolgroup.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_zmatrix.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/zmatrix.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_zmatrix.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonerror.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonerror.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonerror.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythontool_p.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythontool_p.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythontool_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL 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warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Linking CXX shared library ../../lib/libavogadro.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libavogadro.so.1 -o ../../lib/libavogadro.so.1.2.0 CMakeFiles/avogadro.dir/animation.cpp.o CMakeFiles/avogadro.dir/atom.cpp.o CMakeFiles/avogadro.dir/bond.cpp.o CMakeFiles/avogadro.dir/camera.cpp.o CMakeFiles/avogadro.dir/color.cpp.o CMakeFiles/avogadro.dir/colorbutton.cpp.o CMakeFiles/avogadro.dir/cube.cpp.o CMakeFiles/avogadro.dir/cylinder_p.cpp.o CMakeFiles/avogadro.dir/dockextension.cpp.o CMakeFiles/avogadro.dir/dockwidget.cpp.o 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CMakeFiles/avogadro.dir/plugin.cpp.o CMakeFiles/avogadro.dir/pluginmanager.cpp.o CMakeFiles/avogadro.dir/primitive.cpp.o CMakeFiles/avogadro.dir/primitivelist.cpp.o CMakeFiles/avogadro.dir/protein.cpp.o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o CMakeFiles/avogadro.dir/residue.cpp.o CMakeFiles/avogadro.dir/sphere_p.cpp.o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o CMakeFiles/avogadro.dir/tool.cpp.o CMakeFiles/avogadro.dir/toolgroup.cpp.o CMakeFiles/avogadro.dir/undosequence.cpp.o CMakeFiles/avogadro.dir/zmatrix.cpp.o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o CMakeFiles/avogadro.dir/pythonscript.cpp.o CMakeFiles/avogadro.dir/pythonerror.cpp.o CMakeFiles/avogadro.dir/pythontool_p.cpp.o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o CMakeFiles/avogadro.dir/moc_animation.cxx.o CMakeFiles/avogadro.dir/moc_atom.cxx.o CMakeFiles/avogadro.dir/moc_bond.cxx.o CMakeFiles/avogadro.dir/moc_color.cxx.o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o CMakeFiles/avogadro.dir/moc_cube.cxx.o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o CMakeFiles/avogadro.dir/moc_engine.cxx.o CMakeFiles/avogadro.dir/moc_extension.cxx.o CMakeFiles/avogadro.dir/moc_fragment.cxx.o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o CMakeFiles/avogadro.dir/moc_mesh.cxx.o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o CMakeFiles/avogadro.dir/moc_molecule.cxx.o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o CMakeFiles/avogadro.dir/moc_plugin.cxx.o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o CMakeFiles/avogadro.dir/moc_primitive.cxx.o CMakeFiles/avogadro.dir/moc_protein.cxx.o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o CMakeFiles/avogadro.dir/moc_residue.cxx.o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o CMakeFiles/avogadro.dir/moc_tool.cxx.o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -Wl,-rpath,:::::::: -lopenbabel -lQtOpenGL -lQtGui -lQtCore -lGLU -lGL -lGLEW -lpython2.7 -lboost_python engines/bsdyengine.a tools/navigatetool.a colors/elementcolor.a -lopenbabel -lQtGui -lQtCore -lGLU -lGL cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/cmake -E cmake_symlink_library ../../lib/libavogadro.so.1.2.0 ../../lib/libavogadro.so.1 ../../lib/libavogadro.so make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 19%] Built target avogadro /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 19%] Generating ui_cartoonsettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_cartoonsettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonsettingswidget.ui [ 19%] Generating moc_cartoonengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= Scanning dependencies of target cartoonengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 19%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 19%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:44, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:44, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:44, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 19%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 20%] Linking CXX shared module ../../../lib/cartoonengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 20%] Built target cartoonengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 20%] Generating ui_hbondsettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_hbondsettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondsettingswidget.ui [ 20%] Generating moc_hbondengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= Scanning dependencies of target hbondengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 20%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 21%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 21%] Linking CXX shared module ../../../lib/hbondengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 21%] Built target hbondengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 21%] Generating ui_sticksettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_sticksettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sticksettingswidget.ui [ 21%] Generating moc_stickengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= Scanning dependencies of target stickengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 21%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 21%] Linking CXX shared module ../../../lib/stickengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 21%] Built target stickengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 22%] Generating moc_polygonengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= Scanning dependencies of target polygonengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 22%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 22%] Linking CXX shared module ../../../lib/polygonengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 22%] Built target polygonengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 22%] Generating ui_wiresettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_wiresettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wiresettingswidget.ui [ 22%] Generating moc_wireengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= Scanning dependencies of target wireengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 22%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 23%] Linking CXX shared module ../../../lib/wireengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 23%] Built target wireengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 23%] Generating moc_forceengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= Scanning dependencies of target forceengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 23%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 23%] Linking CXX shared module ../../../lib/forceengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 23%] Built target forceengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 24%] Generating ui_spheresettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_spheresettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/spheresettingswidget.ui [ 24%] Generating moc_sphereengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= Scanning dependencies of target sphereengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 24%] Linking CXX shared module ../../../lib/sphereengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 24%] Built target sphereengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 25%] Generating ui_labelsettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_labelsettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelsettingswidget.ui [ 25%] Generating moc_labelengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= Scanning dependencies of target labelengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 25%] Linking CXX shared module ../../../lib/labelengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 25%] Built target labelengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 25%] Generating ui_dipolesettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_dipolesettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipolesettingswidget.ui [ 25%] Generating moc_dipoleengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= Scanning dependencies of target dipoleengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 26%] Linking CXX shared module ../../../lib/dipoleengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 26%] Built target dipoleengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 26%] Generating ui_ringsettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_ringsettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringsettingswidget.ui [ 26%] Generating moc_ringengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= Scanning dependencies of target ringengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 26%] Linking CXX shared module ../../../lib/ringengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 26%] Built target ringengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 26%] Generating ui_qtaimsettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_qtaimsettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimsettingswidget.ui [ 26%] Generating moc_qtaimengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= Scanning dependencies of target qtaimengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 26%] Linking CXX shared module ../../../lib/qtaimengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 26%] Built target qtaimengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 26%] Generating ui_surfacesettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_surfacesettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfacesettingswidget.ui [ 26%] Generating moc_surfaceengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 27%] Linking CXX shared module ../../../lib/surfaceengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 27%] Built target surfaceengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 27%] Generating ui_axessettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_axessettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axessettingswidget.ui [ 27%] Generating moc_axesengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= Scanning dependencies of target axesengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 28%] Linking CXX shared module ../../../lib/axesengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 28%] Built target axesengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 28%] Generating moc_simplewireengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= Scanning dependencies of target simplewireengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 28%] Linking CXX shared module ../../../lib/simplewireengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 28%] Built target simplewireengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 28%] Generating ui_ribbonsettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_ribbonsettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonsettingswidget.ui [ 28%] Generating moc_ribbonengine.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= Scanning dependencies of target ribbonengine make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitivelist.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/engine.h:37, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 29%] Linking CXX shared module ../../../lib/ribbonengine.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 29%] Built target ribbonengine /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 29%] Generating qrc_bondcentrictool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name bondcentrictool -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_bondcentrictool.cxx /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.qrc [ 29%] Generating moc_bondcentrictool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters [ 29%] Generating moc_skeletontree.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= Scanning dependencies of target bondcentrictool make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 29%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 29%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 29%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 29%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_bondcentrictool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 30%] Linking CXX shared module ../../../lib/bondcentrictool.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 30%] Built target bondcentrictool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 30%] Generating qrc_drawtool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name drawtool -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_drawtool.cxx /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.qrc [ 30%] Generating moc_drawtool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_drawtool.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= Scanning dependencies of target drawtool make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:31: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:31: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:31: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_drawtool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_drawtool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_drawtool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_drawtool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Linking CXX shared module ../../../lib/drawtool.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 31%] Built target drawtool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 31%] Generating qrc_clickmeasuretool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name clickmeasuretool -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.qrc [ 31%] Generating moc_clickmeasuretool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= Scanning dependencies of target clickmeasuretool make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 32%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 32%] Linking CXX shared module ../../../lib/clickmeasuretool.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 32%] Built target clickmeasuretool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 32%] Generating qrc_selectrotatetool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name selectrotatetool -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_selectrotatetool.cxx /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.qrc [ 33%] Generating moc_selectrotatetool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target selectrotatetool make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_selectrotatetool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Linking CXX shared module ../../../lib/selectrotatetool.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 33%] Built target selectrotatetool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 33%] Generating qrc_autoopttool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name autoopttool -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autoopttool.cxx /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.qrc [ 33%] Generating moc_autoopttool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= Scanning dependencies of target autoopttool make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autoopttool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autoopttool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 34%] Linking CXX shared module ../../../lib/autoopttool.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 34%] Built target autoopttool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 34%] Generating qrc_manipulatetool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name manipulatetool -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_manipulatetool.cxx /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.qrc [ 34%] Generating moc_manipulatetool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx_parameters [ 34%] Generating ui_manipulatesettingswidget.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/ui_manipulatesettingswidget.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatesettingswidget.ui cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= Scanning dependencies of target manipulatetool make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/complex:41, from /usr/include/eigen3/Eigen/Core:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/c++/6.3.0/bits/locale_classes.h:40, from /usr/include/c++/6.3.0/bits/ios_base.h:41, from /usr/include/c++/6.3.0/ios:42, from /usr/include/c++/6.3.0/istream:38, from /usr/include/c++/6.3.0/sstream:38, from /usr/include/c++/6.3.0/complex:45, from /usr/include/eigen3/Eigen/Core:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/c++/6.3.0/bits/locale_classes.h:40, from /usr/include/c++/6.3.0/bits/ios_base.h:41, from /usr/include/c++/6.3.0/ios:42, from /usr/include/c++/6.3.0/istream:38, from /usr/include/c++/6.3.0/sstream:38, from /usr/include/c++/6.3.0/complex:45, from /usr/include/eigen3/Eigen/Core:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_manipulatetool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_manipulatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 35%] Linking CXX shared module ../../../lib/manipulatetool.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 35%] Built target manipulatetool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 35%] Generating qrc_autorotatetool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name autorotatetool -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autorotatetool.cxx /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.qrc [ 35%] Generating moc_autorotatetool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target autorotatetool make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autorotatetool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autorotatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 35%] Linking CXX shared module ../../../lib/autorotatetool.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 35%] Built target autorotatetool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 35%] Generating qrc_aligntool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/rcc -name aligntool -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_aligntool.cxx /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.qrc [ 35%] Generating moc_aligntool.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_aligntool.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= Scanning dependencies of target aligntool make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/navigate.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/navigate.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/navigate.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_aligntool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/aligntool.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_aligntool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_aligntool.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_aligntool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 35%] Linking CXX shared module ../../../lib/aligntool.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 35%] Built target aligntool /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 35%] Generating ui_insertfragmentdialog.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_insertfragmentdialog.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.ui [ 35%] Generating moc_insertfragmentextension.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters [ 35%] Generating moc_insertfragmentdialog.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters [ 35%] Generating moc_sortfiltertreeproxymodel.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertfragmentextension make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:22: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/atom.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:22: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:31: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:31: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:31: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:29: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:29: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Linking CXX shared module ../../../lib/insertfragmentextension.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 36%] Built target insertfragmentextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 36%] Generating moc_hydrogensextension.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= Scanning dependencies of target hydrogensextension make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 36%] Linking CXX shared module ../../../lib/hydrogensextension.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 36%] Built target hydrogensextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 36%] Generating ui_conformersearchdialog.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_conformersearchdialog.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.ui [ 36%] Generating moc_forcefieldextension.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters [ 36%] Generating moc_forcefielddialog.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters [ 37%] Generating moc_constraintsdialog.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters [ 37%] Generating moc_constraintsmodel.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters [ 37%] Generating moc_conformersearchdialog.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters [ 37%] Generating ui_forcefielddialog.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_forcefielddialog.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.ui [ 37%] Generating ui_constraintsdialog.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_constraintsdialog.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.ui cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= Scanning dependencies of target forcefieldextension make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qwidget.h:47, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qwidget.h:47, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/bits/stl_algobase.h:59, from /usr/include/c++/6.3.0/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/forcefield.h:23, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/forcefield.h:23, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/bits/stl_algobase.h:59, from /usr/include/c++/6.3.0/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/forcefield.h:23, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/forcefield.h:23, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qwidget.h:47, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qwidget.h:47, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qwidget.h:47, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:27, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qwidget.h:47, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefielddialog.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/bits/stl_algobase.h:59, from /usr/include/c++/6.3.0/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/forcefield.h:23, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/forcefield.h:23, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/bits/stl_algobase.h:59, from /usr/include/c++/6.3.0/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/forcefield.h:23, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/forcefield.h:23, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qwidget.h:47, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtGui/qwidget.h:47, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 38%] Linking CXX shared module ../../../lib/forcefieldextension.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 38%] Built target forcefieldextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 38%] Generating moc_selectextension.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_selectextension.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= Scanning dependencies of target selectextension make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:24: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:24: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:26: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:24: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_selectextension.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/selectextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_selectextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 38%] Linking CXX shared module ../../../lib/selectextension.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 38%] Built target selectextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 38%] Generating moc_propextension.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx_parameters [ 38%] Generating __/tools/moc_skeletontree.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters [ 38%] Generating moc_propmodel.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= Scanning dependencies of target propextension make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/cmath:41, from /usr/include/c++/6.3.0/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/mol.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/mol.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/cmath:41, from /usr/include/c++/6.3.0/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/mol.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/mol.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /usr/include/eigen3/Eigen/Geometry:4, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:38, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/cmath:41, from /usr/include/c++/6.3.0/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/mol.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/mol.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/cmath:41, from /usr/include/c++/6.3.0/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/mol.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/openbabel-2.0/openbabel/mol.h:35, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 39%] Linking CXX shared module ../../../lib/propextension.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 39%] Built target propextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 40%] Generating qrc_cartesianextension.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/rcc -name cartesianextension -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_cartesianextension.cxx /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.qrc [ 40%] Generating moc_cartesianextension.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters [ 40%] Generating ui_cartesianeditor.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_cartesianeditor.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianeditor.ui cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= Scanning dependencies of target cartesianextension make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:23: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:25: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:23: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_cartesianextension.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_cartesianextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_cartesianextension.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Linking CXX shared module ../../../lib/cartesianextension.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 40%] Built target cartesianextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 40%] Generating ui_molecularpropdialog.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_molecularpropdialog.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropdialog.ui [ 40%] Generating moc_molecularpropextension.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= Scanning dependencies of target molecularpropextension make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:34, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/eigen3/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder1st<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/c++/6.3.0/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 40%] Linking CXX shared module ../../../lib/molecularpropextension.so cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 /usr/bin/i686-pld-linux-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -Wl,-rpath,/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 40%] Built target molecularpropextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 40%] Generating ui_supercelldialog.h cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/uic -o /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_supercelldialog.h /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.ui [ 40%] Generating moc_supercellextension.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercellextension.cxx_parameters [ 41%] Generating moc_supercelldialog.cxx cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib/qt4/bin/moc @/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.BsD903/BUILD/avogadro-1.2.0 /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= Scanning dependencies of target supercellextension make[2]: Leaving directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[2]: Entering directory '/tmp/B.BsD903/BUILD/avogadro-1.2.0/build' [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/i686-pld-linux-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp In file included from /usr/include/c++/6.3.0/i686-pld-linux/bits/os_defines.h:39:0, from /usr/include/c++/6.3.0/i686-pld-linux/bits/c++config.h:507, from /usr/include/c++/6.3.0/utility:68, from /usr/include/c++/6.3.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:36, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp:29: /usr/include/eigen3/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct functor_traits<std::binder2nd<T> > ^~~~~~~~~ In file included from /usr/include/c++/6.3.0/bits/stl_function.h:1127:0, from /usr/include/c++/6.3.0/string:48, from /usr/include/qt4/QtCore/qstring.h:54, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.BsD903/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.