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avogadro c80a96ef-0946-4d9c-bc35-f5801aebf731

Status:Failed
Source URL:https://buildlogs.pld-linux.org/pld/th/x32/FAIL/avogadro,c80a96ef-0946-4d9c-bc35-f5801aebf731.bz2
text/plain URL:View!
rpm -qa of builder:View!
Date:2020/07/29 20:41:25
Runtime:0:22:53.350715

Toc:

  • prep
  • Executing(%prep): /bin/sh -e /tmp/B.AobQRi/BUILD/tmp/rpm-tmp.26588
  • build
  • Executing(%build): /bin/sh -e /tmp/B.AobQRi/BUILD/tmp/rpm-tmp.55717
  • error 1
  • CMake Error: failed to create symbolic link '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro//tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/config.h': no such file or directory
  • install
  • Executing(%install): /bin/sh -e /tmp/B.AobQRi/BUILD/tmp/rpm-tmp.13768
  • files avogadro
  • Processing files: avogadro-1.2.0-10.x32
  • error 2
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_af.qm
  • error 3
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_ar.qm
  • error 4
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_bg.qm
  • error 5
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_ca.qm
  • error 6
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_ca@valencia.qm
  • error 7
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_cs.qm
  • error 8
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_da.qm
  • error 9
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_de.qm
  • error 10
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_el.qm
  • error 11
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_en_AU.qm
  • error 12
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_en_CA.qm
  • error 13
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_en_GB.qm
  • error 14
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_es.qm
  • error 15
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_et.qm
  • error 16
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_eu.qm
  • error 17
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_fi.qm
  • error 18
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_fr.qm
  • error 19
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_fr_CA.qm
  • error 20
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_gl.qm
  • error 21
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_he.qm
  • error 22
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_hi.qm
  • error 23
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_hr.qm
  • error 24
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_hu.qm
  • error 25
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_id.qm
  • error 26
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_it.qm
  • error 27
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_ja.qm
  • error 28
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_kn.qm
  • error 29
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_ko.qm
  • error 30
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_ms.qm
  • error 31
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_nb.qm
  • error 32
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_nl.qm
  • error 33
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_oc.qm
  • error 34
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_pl.qm
  • error 35
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_pt.qm
  • error 36
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_pt_BR.qm
  • error 37
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_ru.qm
  • error 38
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_sk.qm
  • error 39
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_sl.qm
  • error 40
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_sq.qm
  • error 41
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_sr.qm
  • error 42
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_sv.qm
  • error 43
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_ta.qm
  • error 44
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_te.qm
  • error 45
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_th.qm
  • error 46
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_tr.qm
  • error 47
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_ug.qm
  • error 48
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_uk.qm
  • error 49
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_vi.qm
  • error 50
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_zh_CN.qm
  • error 51
  • error: File not found: /tmp/B.AobQRi/BUILD/tmp/avogadro-1.2.0-root-builder/usr/share/avogadro/i18n/avogadro_zh_TW.qm
  • doc
  • Executing(%doc): /bin/sh -e /tmp/B.AobQRi/BUILD/tmp/rpm-tmp.9824
  • error 52
  • RPM build errors:
  • error 53
  • error: No files produced.

Content:

request from: qboosh
checking if we should skip the build
started at: Wed Jul 29 20:18:26 2020
killing old processes on a builder
sending signal 9 to pid -1
Killed
cleaning up /tmp
fetching https://srcbuilder.pld-linux.org/th//srpms/c80a96ef-0946-4d9c-bc35-f5801aebf731/avogadro-1.2.0-10.src.rpm
fetched 16668008 bytes, 7374.4 K/s
installing srpm: avogadro-1.2.0-10.src.rpm
+ install -d /tmp/B.AobQRi/BUILD /tmp/B.AobQRi/RPMS
+ LC_ALL=en_US.UTF-8
+ rpm -qp --changelog avogadro-1.2.0-10.src.rpm
* Wed Jul 29 2020 PLD Linux Team <feedback@pld-linux.org>
- For complete changelog see: http://git.pld-linux.org/?p=packages/avogadro.git;a=log;h=master
* Wed Jul 29 2020 Jakub Bogusz <qboosh@pld-linux.org> 218561a
- pl, packaging cleanup - release 10 (boost 1.73) * Wed Mar 25 2020 Jan Rękorajski <baggins@pld-linux.org> 0a2037c
- release 9 (by relup.sh) * Thu Oct 10 2019 Jan Rękorajski <baggins@pld-linux.org> bbb6d96
- rebuild with boost 1.71 and icu 65.1 - release 8 (by relup.sh) + rpm -Uhv --nodeps --define '_topdir /tmp/B.AobQRi' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' avogadro-1.2.0-10.src.rpm Preparing... ################################################## avogadro ################################################## + rm -f avogadro-1.2.0-10.src.rpm + install -m 700 -d /tmp/B.AobQRi/BUILD/tmp + TMPDIR=/tmp/B.AobQRi/BUILD/tmp + exec nice -n 0 rpmbuild -bp --short-circuit --nodeps --define '_topdir /tmp/B.AobQRi' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x32-pld-linux --define 'prep exit 0' /tmp/B.AobQRi/avogadro.spec Building target platforms: x32-pld-linux checking BuildConflict-ing packages no BuildConflicts found checking BR rpm: Building target platforms: x32-pld-linux no BR needed building RPM using: set -ex; : build-id: c80a96ef-0946-4d9c-bc35-f5801aebf731; TMPDIR=/tmp/B.AobQRi/BUILD/tmp exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.AobQRi' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x32-pld-linux /tmp/B.AobQRi/avogadro.spec + : build-id: c80a96ef-0946-4d9c-bc35-f5801aebf731 + TMPDIR=/tmp/B.AobQRi/BUILD/tmp + exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.AobQRi' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x32-pld-linux /tmp/B.AobQRi/avogadro.spec Building target platforms: x32-pld-linux Executing(%prep): /bin/sh -e /tmp/B.AobQRi/BUILD/tmp/rpm-tmp.26588 + umask 022 + cd /tmp/B.AobQRi/BUILD + cd /tmp/B.AobQRi/BUILD + rm -rf avogadro-1.2.0 + /bin/gzip -dc /tmp/B.AobQRi/avogadro-1.2.0.tar.gz + /bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadro-1.2.0 + /bin/id -u + '[' 1000 '=' 0 ']' + /bin/id -u + '[' 1000 '=' 0 ']' + /bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (avogadro-linguist.patch):' Patch #0 (avogadro-linguist.patch): + '[' -f /tmp/B.AobQRi/avogadro-linguist.patch ']' + /bin/cat /tmp/B.AobQRi/avogadro-linguist.patch + /usr/bin/patch -s -p0 + echo 'Patch #1 (avogadro-cmake.patch):' Patch #1 (avogadro-cmake.patch): + '[' -f /tmp/B.AobQRi/avogadro-cmake.patch ']' + /bin/cat /tmp/B.AobQRi/avogadro-cmake.patch + /usr/bin/patch -s -p1 + echo 'Patch #2 (avogadro-moc-boost.patch):' Patch #2 (avogadro-moc-boost.patch): + '[' -f /tmp/B.AobQRi/avogadro-moc-boost.patch ']' + /bin/cat /tmp/B.AobQRi/avogadro-moc-boost.patch + /usr/bin/patch -s -p1 + echo 'Patch #3 (gcc6.patch):' Patch #3 (gcc6.patch): + '[' -f /tmp/B.AobQRi/gcc6.patch ']' + /bin/cat /tmp/B.AobQRi/gcc6.patch + /usr/bin/patch -s -p1 + echo 'Patch #4 (python-install.patch):' Patch #4 (python-install.patch): + '[' -f /tmp/B.AobQRi/python-install.patch ']' + /bin/cat /tmp/B.AobQRi/python-install.patch + /usr/bin/patch -s -p1 + echo 'Patch #5 (avogadro_eigen3.patch):' Patch #5 (avogadro_eigen3.patch): + '[' -f /tmp/B.AobQRi/avogadro_eigen3.patch ']' + /bin/cat /tmp/B.AobQRi/avogadro_eigen3.patch + /usr/bin/patch -s -p1 + echo 'Patch #6 (boost-python.patch):' Patch #6 (boost-python.patch): + '[' -f /tmp/B.AobQRi/boost-python.patch ']' + /bin/cat /tmp/B.AobQRi/boost-python.patch + /usr/bin/patch -s -p1 + exit 0 Executing(%build): /bin/sh -e /tmp/B.AobQRi/BUILD/tmp/rpm-tmp.55717 HOME=/home/users/builder PATH=/home/users/builder/GNUstep/Tools:/bin:/usr/bin:/usr/local/bin TMPDIR=/tmp/B.AobQRi/BUILD/tmp + umask 022 + cd /tmp/B.AobQRi/BUILD + cd avogadro-1.2.0 + install -d build + cd build + CC=x86_64-pld-linux-gnux32-gcc CXX=x86_64-pld-linux-gnux32-g++ CPPFLAGS='' /usr/bin/cmake -Wno-dev '-DCMAKE_VERBOSE_MAKEFILE=ON' '-DCMAKE_BUILD_TYPE=PLD' '-DCMAKE_INSTALL_BINDIR:PATH=/usr/bin' '-DCMAKE_INSTALL_SBINDIR:PATH=/usr/sbin' '-DCMAKE_INSTALL_LIBEXECDIR:PATH=/usr/libexec' '-DCMAKE_INSTALL_SYSCONFDIR:PATH=/etc' '-DCMAKE_INSTALL_SHAREDSTATEDIRPATH:PATH=/var/lib' '-DCMAKE_INSTALL_LOCALSTATEDIRPATH:PATH=/var' '-DCMAKE_INSTALL_LIBDIR:PATH=/usr/libx32' '-DCMAKE_INSTALL_INCLUDEDIR:PATH=/usr/include' '-DCMAKE_INSTALL_OLDINCLUDEDIR:PATH=/usr/include' '-DCMAKE_INSTALL_DATAROOTDIR:PATH=/usr/share' '-DCMAKE_INSTALL_DATADIR:PATH=/usr/share' '-DCMAKE_INSTALL_INFODIR:PATH=/usr/share/info' '-DCMAKE_INSTALL_LOCALEDIR:PATH=/usr/share/locale' '-DCMAKE_INSTALL_MANDIR:PATH=/usr/share/man' '-DCMAKE_INSTALL_DOCDIR:PATH=/usr/share/doc' '-DCMAKE_INSTALL_PREFIX:PATH=/usr' '-DSYSCONF_INSTALL_DIR:PATH=/etc' '-DCMAKE_CXX_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_C_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_Fortran_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_EXE_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DCMAKE_SHARED_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DCMAKE_MODULE_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DLIB_SUFFIX=x32' '-DBUILD_SHARED_LIBS:BOOL=ON' .. '-DCMAKE_BUILD_TYPE=Release' '-DENABLE_GLSL=ON' '-DENABLE_PYTHON=ON' '-DENABLE_UPDATE_CHECKER=OFF' '-DINSTALL_CMAKE_DIR:PATH=libx32/cmake/libmsym' '-DINSTALL_LIB_DIR:PATH=libx32' -- The C compiler identification is GNU 10.2.0 -- The CXX compiler identification is GNU 10.2.0 -- Check for working C compiler: /usr/bin/x86_64-pld-linux-gnux32-gcc -- Check for working C compiler: /usr/bin/x86_64-pld-linux-gnux32-gcc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/x86_64-pld-linux-gnux32-g++ -- Check for working CXX compiler: /usr/bin/x86_64-pld-linux-gnux32-g++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The build type is Release -- Performing Test HAVE_NO_RTTI -- Performing Test HAVE_NO_RTTI - Success -- Performing Test HAVE_RTTI -- Performing Test HAVE_RTTI - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.7", minimum required is "4.6.0") -- Found OpenGL: /usr/libx32/libGL.so -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/libx32/libX11.so;/usr/libx32/libXext.so -- Looking for XOpenDisplay in /usr/libx32/libX11.so;/usr/libx32/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found lupdate: /usr/bin/lupdate-qt4 -- Found lrelease: /usr/bin/lrelease-qt4 CMake Warning at CMakeLists.txt:229 (message): Qt4 Linguist not found, please install it if you want Avogadro translations -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found ZLIB: /usr/libx32/libz.so (found version "1.2.11") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'openbabel-2.0>=2.3.0' -- Found openbabel-2.0, version 2.4.1 -- Found OpenBabel 2.3 or later: openbabel -- Found OpenBabel2 executable: /usr/bin/babel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python -- Found Boost: /usr/include (found version "1.73.0") found components: python27 -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/libx32/libpython2.7.so -- [3/5] Python Interpreter -- Found PythonInterp: /usr/bin/python (found version "2.7.18") -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- SIP version 267031 found -- Found SIP: /usr/include/python2.7 -- All python dependencies found - Python support enabled -- GLEW found and GLSL support enabled -- Threaded OpenGL rendering not enabled -- RPath support enabled for installed binaries and libraries -- Setting new boost python libraries CMake Error: failed to create symbolic link '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro//tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/config.h': no such file or directory -- Enabled python terminal -- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.7", minimum required is "4.6") -- Linking in static plugins: bsdyengine;navigatetool;elementcolor -- Python site-packages directory: /usr/libx32/python2.7/site-packages -- Found Doxygen: /usr/bin/doxygen (found version "1.8.8") found components: doxygen dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_PLD CMAKE_C_FLAGS_PLD CMAKE_EXE_LINKER_FLAGS_PLD CMAKE_Fortran_FLAGS_PLD CMAKE_INSTALL_BINDIR CMAKE_INSTALL_DATADIR CMAKE_INSTALL_DATAROOTDIR CMAKE_INSTALL_DOCDIR CMAKE_INSTALL_INCLUDEDIR CMAKE_INSTALL_INFODIR CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LIBEXECDIR CMAKE_INSTALL_LOCALEDIR CMAKE_INSTALL_LOCALSTATEDIRPATH CMAKE_INSTALL_MANDIR CMAKE_INSTALL_OLDINCLUDEDIR CMAKE_INSTALL_SBINDIR CMAKE_INSTALL_SHAREDSTATEDIRPATH CMAKE_INSTALL_SYSCONFDIR CMAKE_MODULE_LINKER_FLAGS_PLD CMAKE_SHARED_LINKER_FLAGS_PLD SYSCONF_INSTALL_DIR -- Build files have been written to: /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build + /usr/bin/make -Otarget -j9 -j1 /usr/bin/cmake -S/tmp/B.AobQRi/BUILD/avogadro-1.2.0 -B/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/CMakeFiles /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 0%] Generating moc_elementcolor.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_elementcolor.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/colors /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= Scanning dependencies of target elementcolor make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 0%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 0%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_elementcolor.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/../../../../libavogadro/src/colors/elementcolor.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_elementcolor.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 0%] Linking CXX static library elementcolor.a cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 /usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o /usr/bin/ranlib elementcolor.a make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 0%] Built target elementcolor /usr/bin/make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 0%] Generating ui_bsdysettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_bsdysettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdysettingswidget.ui [ 0%] Generating moc_bsdyengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= Scanning dependencies of target bsdyengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 0%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 0%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 0%] Linking CXX static library bsdyengine.a cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 /usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o /usr/bin/ranlib bsdyengine.a make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 0%] Built target bsdyengine /usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 1%] Generating qrc_navigatetool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/rcc -name navigatetool -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_navigatetool.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.qrc [ 1%] Generating moc_navigatetool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx_parameters [ 1%] Generating ui_navigatesettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/ui_navigatesettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatesettingswidget.ui cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= Scanning dependencies of target navigatetool make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_navigatetool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_navigatetool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 1%] Linking CXX static library navigatetool.a cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 /usr/bin/ar qc navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o /usr/bin/ranlib navigatetool.a make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 1%] Built target navigatetool /usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 1%] Generating qrc_pythontool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/rcc -name pythontool -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/qrc_pythontool.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythontool.qrc [ 1%] Generating moc_animation.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx_parameters [ 1%] Generating moc_atom.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx_parameters [ 1%] Generating moc_bond.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx_parameters [ 1%] Generating moc_color.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_color.cxx_parameters [ 1%] Generating moc_colorbutton.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_colorbutton.cxx_parameters [ 1%] Generating moc_cube.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx_parameters [ 2%] Generating moc_dockextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockextension.cxx_parameters [ 2%] Generating moc_dockwidget.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockwidget.cxx_parameters [ 2%] Generating moc_elementdetail_p.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementdetail_p.cxx_parameters [ 2%] Generating moc_elementtranslator.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementtranslator.cxx_parameters [ 2%] Generating moc_engine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx_parameters [ 2%] Generating moc_extension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_extension.cxx_parameters [ 2%] Generating moc_fragment.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx_parameters [ 2%] Generating moc_glwidget.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx_parameters [ 3%] Generating moc_mesh.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx_parameters [ 3%] Generating moc_meshgenerator.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx_parameters [ 3%] Generating moc_molecule.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx_parameters [ 3%] Generating moc_moleculefile.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx_parameters [ 3%] Generating moc_periodictablescene_p.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictablescene_p.cxx_parameters [ 3%] Generating moc_periodictableview.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictableview.cxx_parameters [ 3%] Generating moc_plotwidget.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plotwidget.cxx_parameters [ 3%] Generating moc_plugin.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plugin.cxx_parameters [ 3%] Generating moc_pluginmanager.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pluginmanager.cxx_parameters [ 4%] Generating moc_primitive.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx_parameters [ 4%] Generating moc_protein.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_protein.cxx_parameters [ 4%] Generating moc_readfilethread_p.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_readfilethread_p.cxx_parameters [ 4%] Generating moc_residue.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx_parameters [ 4%] Generating moc_textmatrixeditor.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx_parameters [ 4%] Generating moc_tool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_tool.cxx_parameters [ 4%] Generating moc_toolgroup.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_toolgroup.cxx_parameters [ 4%] Generating moc_zmatrix.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_zmatrix.cxx_parameters [ 5%] Generating moc_pythonengine_p.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx_parameters [ 5%] Generating moc_pythonerror.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonerror.cxx_parameters [ 5%] Generating moc_pythonextension_p.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx_parameters [ 5%] Generating moc_pythontool_p.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythontool_p.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 5%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/animation.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/animation.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 5%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/atom.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/atom.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 5%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/bond.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/bond.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 5%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 6%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/color.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/color.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/color.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/color.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 6%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/colorbutton.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/colorbutton.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/colorbutton.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 6%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/cube.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/cube.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 6%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 6%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/dockextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/dockextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/dockextension.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 6%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockwidget.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/dockwidget.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/dockwidget.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/dockwidget.cpp:18: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 6%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/elementdetail_p.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 6%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/elementitem_p.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/elementitem_p.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/elementitem_p.cpp:28: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 6%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/elementtranslator.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 7%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/engine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 7%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/extension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extension.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 7%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/fragment.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 7%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/glhit.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/glhit.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/glhit.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/glhit.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 7%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/global.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/global.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/global.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/global.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 7%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/glpainter_p.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 7%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonthread_p.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:51: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/idlist.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 8%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/mesh.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/mesh.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 8%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 8%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 8%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 8%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 8%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/neighborlist.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 8%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/painter.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/painter.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp:28: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 8%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qgraphicsscene.h:45, from /usr/include/qt4/QtGui/QGraphicsScene:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 8%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 9%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.cpp:29: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 9%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotobject.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.cpp:29: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 9%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotpoint.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.cpp:29: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 9%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotwidget.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plotaxis.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.cpp:29: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 9%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plugin.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plugin.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/plugin.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 9%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pluginmanager.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:31: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/primitive.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 9%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/protein.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/protein.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/readfilethread_p.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/residue.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/residue.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/tool.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tool.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tool.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/undosequence.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/zmatrix.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonscript.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.cpp:26: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonerror.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonerror.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/pythonerror.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonerror.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonerror.cpp:26: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythontool_p.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:33, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:37, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/animation.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_atom.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_atom.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/atom.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_bond.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_bond.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/bond.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_color.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_color.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_color.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/color.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_color.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_colorbutton.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/colorbutton.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_colorbutton.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_cube.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_cube.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/cube.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/dockextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockwidget.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockwidget.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementdetail_p.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/elementdetail_p.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementdetail_p.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementtranslator.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/elementtranslator.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementtranslator.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_engine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_engine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/engine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_extension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_extension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_extension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_extension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_fragment.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_fragment.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_mesh.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_mesh.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/meshgenerator.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_molecule.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_molecule.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/moleculefile.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictablescene_p.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qgraphicsscene.h:45, from /usr/include/qt4/QtGui/QGraphicsScene:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/periodictablescene_p.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictablescene_p.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictableview.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/periodictableview.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictableview.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plotwidget.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plotaxis.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plotwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plotwidget.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plugin.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_plugin.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plugin.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plugin.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pluginmanager.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pluginmanager.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pluginmanager.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_protein.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_protein.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/protein.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_protein.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_readfilethread_p.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/readfilethread_p.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_readfilethread_p.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/residue.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_tool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/tool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_tool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_toolgroup.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/toolgroup.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_toolgroup.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_zmatrix.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/zmatrix.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_zmatrix.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonerror.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonerror.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonerror.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:33, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:37, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythontool_p.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythontool_p.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythontool_p.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythontool_p.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythontool_p.cxx:9: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/qrc_pythontool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/qrc_pythontool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 16%] Linking CXX shared library ../../libx32/libavogadro.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libavogadro.so.1 -o ../../libx32/libavogadro.so.1.2.0 CMakeFiles/avogadro.dir/animation.cpp.o CMakeFiles/avogadro.dir/atom.cpp.o CMakeFiles/avogadro.dir/bond.cpp.o CMakeFiles/avogadro.dir/camera.cpp.o CMakeFiles/avogadro.dir/color.cpp.o CMakeFiles/avogadro.dir/colorbutton.cpp.o CMakeFiles/avogadro.dir/cube.cpp.o CMakeFiles/avogadro.dir/cylinder_p.cpp.o CMakeFiles/avogadro.dir/dockextension.cpp.o CMakeFiles/avogadro.dir/dockwidget.cpp.o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o CMakeFiles/avogadro.dir/elementitem_p.cpp.o CMakeFiles/avogadro.dir/elementtranslator.cpp.o CMakeFiles/avogadro.dir/engine.cpp.o CMakeFiles/avogadro.dir/extension.cpp.o CMakeFiles/avogadro.dir/fragment.cpp.o CMakeFiles/avogadro.dir/glhit.cpp.o CMakeFiles/avogadro.dir/global.cpp.o CMakeFiles/avogadro.dir/glpainter_p.cpp.o CMakeFiles/avogadro.dir/glwidget.cpp.o CMakeFiles/avogadro.dir/idlist.cpp.o CMakeFiles/avogadro.dir/mesh.cpp.o CMakeFiles/avogadro.dir/meshgenerator.cpp.o CMakeFiles/avogadro.dir/molecule.cpp.o CMakeFiles/avogadro.dir/moleculefile.cpp.o CMakeFiles/avogadro.dir/navigate.cpp.o CMakeFiles/avogadro.dir/neighborlist.cpp.o CMakeFiles/avogadro.dir/painter.cpp.o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o CMakeFiles/avogadro.dir/periodictableview.cpp.o CMakeFiles/avogadro.dir/plotaxis.cpp.o CMakeFiles/avogadro.dir/plotobject.cpp.o CMakeFiles/avogadro.dir/plotpoint.cpp.o CMakeFiles/avogadro.dir/plotwidget.cpp.o CMakeFiles/avogadro.dir/plugin.cpp.o CMakeFiles/avogadro.dir/pluginmanager.cpp.o CMakeFiles/avogadro.dir/primitive.cpp.o CMakeFiles/avogadro.dir/primitivelist.cpp.o CMakeFiles/avogadro.dir/protein.cpp.o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o CMakeFiles/avogadro.dir/residue.cpp.o CMakeFiles/avogadro.dir/sphere_p.cpp.o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o CMakeFiles/avogadro.dir/tool.cpp.o CMakeFiles/avogadro.dir/toolgroup.cpp.o CMakeFiles/avogadro.dir/undosequence.cpp.o CMakeFiles/avogadro.dir/zmatrix.cpp.o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o CMakeFiles/avogadro.dir/pythonscript.cpp.o CMakeFiles/avogadro.dir/pythonerror.cpp.o CMakeFiles/avogadro.dir/pythontool_p.cpp.o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o CMakeFiles/avogadro.dir/moc_animation.cxx.o CMakeFiles/avogadro.dir/moc_atom.cxx.o CMakeFiles/avogadro.dir/moc_bond.cxx.o CMakeFiles/avogadro.dir/moc_color.cxx.o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o CMakeFiles/avogadro.dir/moc_cube.cxx.o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o CMakeFiles/avogadro.dir/moc_engine.cxx.o CMakeFiles/avogadro.dir/moc_extension.cxx.o CMakeFiles/avogadro.dir/moc_fragment.cxx.o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o CMakeFiles/avogadro.dir/moc_mesh.cxx.o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o CMakeFiles/avogadro.dir/moc_molecule.cxx.o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o CMakeFiles/avogadro.dir/moc_plugin.cxx.o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o CMakeFiles/avogadro.dir/moc_primitive.cxx.o CMakeFiles/avogadro.dir/moc_protein.cxx.o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o CMakeFiles/avogadro.dir/moc_residue.cxx.o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o CMakeFiles/avogadro.dir/moc_tool.cxx.o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -Wl,-rpath,::::::::::: -lopenbabel -lQtOpenGL -lQtGui -lQtCore -lGL -lGLU -lGLEW -lpython2.7 -lboost_python27 engines/bsdyengine.a tools/navigatetool.a colors/elementcolor.a -lopenbabel -lQtGui -lQtCore -lGL -lGLU cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/cmake -E cmake_symlink_library ../../libx32/libavogadro.so.1.2.0 ../../libx32/libavogadro.so.1 ../../libx32/libavogadro.so make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 16%] Built target avogadro /usr/bin/make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 16%] Generating ui_qtaimsettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_qtaimsettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimsettingswidget.ui [ 16%] Generating moc_qtaimengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= Scanning dependencies of target qtaimengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 17%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 17%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 17%] Linking CXX shared module ../../../libx32/qtaimengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 17%] Built target qtaimengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 17%] Generating moc_simplewireengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= Scanning dependencies of target simplewireengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 17%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 17%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 17%] Linking CXX shared module ../../../libx32/simplewireengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 17%] Built target simplewireengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 17%] Generating ui_dipolesettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_dipolesettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipolesettingswidget.ui [ 17%] Generating moc_dipoleengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= Scanning dependencies of target dipoleengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 18%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 18%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 18%] Linking CXX shared module ../../../libx32/dipoleengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 18%] Built target dipoleengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 18%] Generating ui_axessettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_axessettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/axessettingswidget.ui [ 18%] Generating moc_axesengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= Scanning dependencies of target axesengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 19%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 19%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 19%] Linking CXX shared module ../../../libx32/axesengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 19%] Built target axesengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 19%] Generating moc_forceengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= Scanning dependencies of target forceengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 19%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 19%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 20%] Linking CXX shared module ../../../libx32/forceengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 20%] Built target forceengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 21%] Generating ui_spheresettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_spheresettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/spheresettingswidget.ui [ 21%] Generating moc_sphereengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= Scanning dependencies of target sphereengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 21%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 21%] Linking CXX shared module ../../../libx32/sphereengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 21%] Built target sphereengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 21%] Generating ui_sticksettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_sticksettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/sticksettingswidget.ui [ 21%] Generating moc_stickengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= Scanning dependencies of target stickengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 21%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 21%] Linking CXX shared module ../../../libx32/stickengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 21%] Built target stickengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 21%] Generating ui_hbondsettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_hbondsettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondsettingswidget.ui [ 21%] Generating moc_hbondengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= Scanning dependencies of target hbondengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 21%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 22%] Linking CXX shared module ../../../libx32/hbondengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 22%] Built target hbondengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 22%] Generating ui_labelsettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_labelsettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelsettingswidget.ui [ 22%] Generating moc_labelengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= Scanning dependencies of target labelengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 23%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 23%] Linking CXX shared module ../../../libx32/labelengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 23%] Built target labelengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 23%] Generating ui_ribbonsettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_ribbonsettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonsettingswidget.ui [ 23%] Generating moc_ribbonengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= Scanning dependencies of target ribbonengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 23%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 24%] Linking CXX shared module ../../../libx32/ribbonengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 24%] Built target ribbonengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 24%] Generating moc_polygonengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= Scanning dependencies of target polygonengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 25%] Linking CXX shared module ../../../libx32/polygonengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 25%] Built target polygonengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 25%] Generating ui_cartoonsettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_cartoonsettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonsettingswidget.ui [ 25%] Generating moc_cartoonengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= Scanning dependencies of target cartoonengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 26%] Linking CXX shared module ../../../libx32/cartoonengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 26%] Built target cartoonengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 26%] Generating ui_wiresettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_wiresettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/wiresettingswidget.ui [ 26%] Generating moc_wireengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= Scanning dependencies of target wireengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 27%] Linking CXX shared module ../../../libx32/wireengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 27%] Built target wireengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 27%] Generating ui_ringsettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_ringsettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringsettingswidget.ui [ 27%] Generating moc_ringengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= Scanning dependencies of target ringengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 27%] Linking CXX shared module ../../../libx32/ringengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 27%] Built target ringengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 28%] Generating ui_surfacesettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_surfacesettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfacesettingswidget.ui [ 28%] Generating moc_surfaceengine.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceengine make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 28%] Linking CXX shared module ../../../libx32/surfaceengine.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 28%] Built target surfaceengine /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 29%] Generating qrc_clickmeasuretool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/rcc -name clickmeasuretool -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.qrc [ 29%] Generating moc_clickmeasuretool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= Scanning dependencies of target clickmeasuretool make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 29%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 29%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 29%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 29%] Linking CXX shared module ../../../libx32/clickmeasuretool.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 29%] Built target clickmeasuretool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 29%] Generating qrc_drawtool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/rcc -name drawtool -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_drawtool.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.qrc [ 29%] Generating moc_drawtool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_drawtool.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= Scanning dependencies of target drawtool make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_drawtool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_drawtool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_drawtool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_drawtool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 30%] Linking CXX shared module ../../../libx32/drawtool.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 30%] Built target drawtool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 30%] Generating qrc_selectrotatetool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/rcc -name selectrotatetool -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_selectrotatetool.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.qrc [ 30%] Generating moc_selectrotatetool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target selectrotatetool make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_selectrotatetool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 30%] Linking CXX shared module ../../../libx32/selectrotatetool.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 30%] Built target selectrotatetool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 30%] Generating qrc_manipulatetool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/rcc -name manipulatetool -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_manipulatetool.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.qrc [ 30%] Generating moc_manipulatetool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx_parameters [ 30%] Generating ui_manipulatesettingswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/ui_manipulatesettingswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatesettingswidget.ui cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= Scanning dependencies of target manipulatetool make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_manipulatetool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_manipulatetool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 31%] Linking CXX shared module ../../../libx32/manipulatetool.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 31%] Built target manipulatetool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 31%] Generating qrc_autorotatetool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/rcc -name autorotatetool -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autorotatetool.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.qrc [ 31%] Generating moc_autorotatetool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target autorotatetool make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 32%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 32%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autorotatetool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autorotatetool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 32%] Linking CXX shared module ../../../libx32/autorotatetool.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 32%] Built target autorotatetool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 32%] Generating qrc_autoopttool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/rcc -name autoopttool -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autoopttool.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.qrc [ 33%] Generating moc_autoopttool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= Scanning dependencies of target autoopttool make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autoopttool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autoopttool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 33%] Linking CXX shared module ../../../libx32/autoopttool.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 33%] Built target autoopttool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 33%] Generating qrc_aligntool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/rcc -name aligntool -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_aligntool.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.qrc [ 33%] Generating moc_aligntool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_aligntool.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= Scanning dependencies of target aligntool make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_aligntool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/aligntool.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_aligntool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_aligntool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_aligntool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 34%] Linking CXX shared module ../../../libx32/aligntool.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 34%] Built target aligntool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 34%] Generating qrc_bondcentrictool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/rcc -name bondcentrictool -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_bondcentrictool.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.qrc [ 34%] Generating moc_bondcentrictool.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters [ 34%] Generating moc_skeletontree.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= Scanning dependencies of target bondcentrictool make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_bondcentrictool.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 35%] Linking CXX shared module ../../../libx32/bondcentrictool.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 35%] Built target bondcentrictool /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 35%] Generating moc_networkfetchextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_networkfetchextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= Scanning dependencies of target networkfetchextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 35%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 35%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_networkfetchextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_networkfetchextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 36%] Linking CXX shared module ../../../libx32/networkfetchextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 36%] Built target networkfetchextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 36%] Generating ui_fileimportdialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_fileimportdialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportdialog.ui [ 37%] Generating moc_fileimportextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= Scanning dependencies of target fileimportextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_fileimportextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_fileimportextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 37%] Linking CXX shared module ../../../libx32/fileimportextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 37%] Built target fileimportextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 37%] Generating qrc_animationextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/rcc -name animationextension -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_animationextension.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.qrc [ 37%] Generating moc_animationextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationextension.cxx_parameters [ 37%] Generating moc_animationdialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationdialog.cxx_parameters [ 37%] Generating ui_animationdialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_animationdialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.ui cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= Scanning dependencies of target animationextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp:24: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 37%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationdialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationdialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_animationextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_animationextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 38%] Linking CXX shared module ../../../libx32/animationextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 38%] Built target animationextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 38%] Generating ui_povraydialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_povraydialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.ui [ 38%] Generating moc_povrayextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povrayextension.cxx_parameters [ 38%] Generating moc_povraydialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povraydialog.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= Scanning dependencies of target povrayextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 38%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povrayextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povrayextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povraydialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povraydialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 39%] Linking CXX shared module ../../../libx32/povrayextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 39%] Built target povrayextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 39%] Generating moc_propextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx_parameters [ 39%] Generating __/tools/moc_skeletontree.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters [ 39%] Generating moc_propmodel.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= Scanning dependencies of target propextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/cmath:41, from /usr/include/c++/10.2.0/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/cmath:41, from /usr/include/c++/10.2.0/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/cmath:41, from /usr/include/c++/10.2.0/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/cmath:41, from /usr/include/c++/10.2.0/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 40%] Linking CXX shared module ../../../libx32/propextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 40%] Built target propextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 40%] Generating ui_conformersearchdialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_conformersearchdialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.ui [ 40%] Generating moc_forcefieldextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters [ 40%] Generating moc_forcefielddialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters [ 40%] Generating moc_constraintsdialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters [ 40%] Generating moc_constraintsmodel.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters [ 40%] Generating moc_conformersearchdialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters [ 40%] Generating ui_forcefielddialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_forcefielddialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.ui [ 40%] Generating ui_constraintsdialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_constraintsdialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.ui cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= Scanning dependencies of target forcefieldextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/bits/stl_algobase.h:59, from /usr/include/c++/10.2.0/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/bits/stl_algobase.h:59, from /usr/include/c++/10.2.0/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefielddialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/bits/stl_algobase.h:59, from /usr/include/c++/10.2.0/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/bits/stl_algobase.h:59, from /usr/include/c++/10.2.0/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 42%] Linking CXX shared module ../../../libx32/forcefieldextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 42%] Built target forcefieldextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 42%] Generating ui_vrmldialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_vrmldialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui: Warning: Buddy assignment: 'dimX' is not a valid widget. [ 42%] Generating moc_vrmlextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmlextension.cxx_parameters [ 42%] Generating moc_vrmldialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmldialog.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= Scanning dependencies of target vrmlextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.h:4, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:3: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmlextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmlextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmldialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmldialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 43%] Linking CXX shared module ../../../libx32/vrmlextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 43%] Built target vrmlextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 43%] Generating qrc_cartesianextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/rcc -name cartesianextension -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_cartesianextension.cxx /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.qrc [ 43%] Generating moc_cartesianextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters [ 44%] Generating ui_cartesianeditor.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_cartesianeditor.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianeditor.ui cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= Scanning dependencies of target cartesianextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_cartesianextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_cartesianextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_cartesianextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 44%] Linking CXX shared module ../../../libx32/cartesianextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Built target cartesianextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Generating moc_hydrogensextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= Scanning dependencies of target hydrogensextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 44%] Linking CXX shared module ../../../libx32/hydrogensextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Built target hydrogensextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Generating moc_h2methylextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= Scanning dependencies of target h2methylextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_h2methylextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_h2methylextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 44%] Linking CXX shared module ../../../libx32/h2methylextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Built target h2methylextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Generating moc_invertchiralextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= Scanning dependencies of target invertchiralextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp:20: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_invertchiralextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 44%] Linking CXX shared module ../../../libx32/invertchiralextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Built target invertchiralextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Generating ui_insertfragmentdialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_insertfragmentdialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.ui [ 44%] Generating moc_insertfragmentextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters [ 44%] Generating moc_insertfragmentdialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters [ 44%] Generating moc_sortfiltertreeproxymodel.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertfragmentextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 45%] Linking CXX shared module ../../../libx32/insertfragmentextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 45%] Built target insertfragmentextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 45%] Generating moc_selectextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_selectextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= Scanning dependencies of target selectextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:24: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_selectextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/selectextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_selectextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 46%] Linking CXX shared module ../../../libx32/selectextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 46%] Built target selectextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 46%] Generating moc_gl2psextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_gl2psextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= Scanning dependencies of target gl2psextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 46%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.h:39, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:36: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_gl2psextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gl2psextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_gl2psextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 47%] Linking CXX shared module ../../../libx32/gl2psextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 47%] Built target gl2psextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 47%] Generating ui_molecularpropdialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_molecularpropdialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropdialog.ui [ 47%] Generating moc_molecularpropextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= Scanning dependencies of target molecularpropextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 47%] Linking CXX shared module ../../../libx32/molecularpropextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 47%] Built target molecularpropextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 47%] Generating ui_insertpeptidedialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_insertpeptidedialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptidedialog.ui [ 47%] Generating moc_insertpeptideextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertpeptideextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 48%] Linking CXX shared module ../../../libx32/insertpeptideextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 48%] Built target insertpeptideextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 48%] Generating ui_supercelldialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_supercelldialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.ui [ 49%] Generating moc_supercellextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercellextension.cxx_parameters [ 49%] Generating moc_supercelldialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= Scanning dependencies of target supercellextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_supercelldialog.h:12, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp:20: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercellextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercellextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercelldialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_supercelldialog.h:12, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercelldialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 49%] Linking CXX shared module ../../../libx32/supercellextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 49%] Built target supercellextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 49%] Generating ui_insertdnadialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_insertdnadialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnadialog.ui [ 49%] Generating moc_insertdnaextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertdnaextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertdnaextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertdnaextension.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertdnaextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 50%] Linking CXX shared module ../../../libx32/insertdnaextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 50%] Built target insertdnaextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 50%] Generating ui_shaderdialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_shaderdialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderdialog.ui [ 50%] Generating moc_shaderextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_shaderextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= Scanning dependencies of target shaderextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_shaderextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_shaderextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 51%] Linking CXX shared module ../../../libx32/shaderextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lGLEW make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 51%] Built target shaderextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 51%] Generating ui_pythonterminalwidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_pythonterminalwidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminalwidget.ui [ 51%] Generating moc_pythonterminal.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters [ 52%] Generating moc_highlighter.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_highlighter.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= Scanning dependencies of target pythonterminal make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/../pythoninterpreter.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.h:34, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/highlighter.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_pythonterminal.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /usr/include/boost/python/exception_translator.hpp:10, from /usr/include/boost/python.hpp:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/../pythoninterpreter.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:34, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_highlighter.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_highlighter.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 52%] Linking CXX shared module ../../../libx32/pythonterminal.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../libx32/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 52%] Built target pythonterminal /usr/bin/make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= Scanning dependencies of target msym make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 53%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/character_table.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 53%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 53%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/elements.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/elements.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 53%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/equivalence_set.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/equivalence_set.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 53%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/geometry.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/geometry.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 53%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/linalg.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/linalg.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c:12: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 53%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/msym.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 53%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym_error.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/msym_error.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c:12: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 53%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/orbital.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/orbital.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 54%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/permutation.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/permutation.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 54%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/point_group.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/point_group.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:12: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 54%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetrize.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/symmetrize.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 54%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetry.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/symmetry.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.h:16, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.h:15, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 54%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symop.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmsym_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -std=c99 -O3 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/symop.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:11: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 54%] Linking C shared library ../../../../../libx32/libmsym.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -E cmake_link_script CMakeFiles/msym.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-gcc -fPIC -std=c99 -O3 -DNDEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libmsym.so -o ../../../../../libx32/libmsym.so CMakeFiles/msym.dir/src/character_table.c.o CMakeFiles/msym.dir/src/context.c.o CMakeFiles/msym.dir/src/elements.c.o CMakeFiles/msym.dir/src/equivalence_set.c.o CMakeFiles/msym.dir/src/geometry.c.o CMakeFiles/msym.dir/src/linalg.c.o CMakeFiles/msym.dir/src/msym.c.o CMakeFiles/msym.dir/src/msym_error.c.o CMakeFiles/msym.dir/src/orbital.c.o CMakeFiles/msym.dir/src/permutation.c.o CMakeFiles/msym.dir/src/point_group.c.o CMakeFiles/msym.dir/src/symmetrize.c.o CMakeFiles/msym.dir/src/symmetry.c.o CMakeFiles/msym.dir/src/symop.c.o -Wl,-rpath,::::::::::: -lm make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 54%] Built target msym /usr/bin/make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 54%] Generating ui_symmetrydialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetrydialog.ui [ 54%] Generating moc_symmetryextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= Scanning dependencies of target symmetryextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 54%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 54%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 55%] Linking CXX shared module ../../../../libx32/symmetryextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../../libx32/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU ../../../../libx32/libmsym.so -lm make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 55%] Built target symmetryextension /usr/bin/make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/DependInfo.cmake --color= Scanning dependencies of target spglib make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 55%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/cell.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/cell.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/cell.c [ 55%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/debug.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/debug.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/debug.c [ 55%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/hall_symbol.c.o cd 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/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/hall_symbol.c [ 56%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/lattice.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/lattice.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/lattice.c [ 56%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/mathfunc.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/mathfunc.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/mathfunc.c [ 56%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/pointgroup.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/pointgroup.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/pointgroup.c [ 56%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/primitive.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/primitive.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/primitive.c [ 56%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/refinement.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/refinement.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/refinement.c [ 56%] Building C object 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CMakeFiles/spglib.dir/spacegroup.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spacegroup.c [ 56%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spg_database.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spg_database.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spg_database.c [ 56%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spglib.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spglib.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spglib.c [ 56%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/symmetry.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/symmetry.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/symmetry.c [ 57%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/kpoint.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/kpoint.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/kpoint.c [ 57%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/site_symmetry.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/site_symmetry.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/site_symmetry.c [ 57%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/sitesym_database.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/sitesym_database.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/sitesym_database.c [ 57%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spglib_f.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spglib_f.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spglib_f.c [ 57%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spin.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spin.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spin.c [ 57%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/tetrahedron_method.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/tetrahedron_method.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/tetrahedron_method.c [ 57%] Linking C static library libspglib.a cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -P CMakeFiles/spglib.dir/cmake_clean_target.cmake cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -E cmake_link_script CMakeFiles/spglib.dir/link.txt --verbose=1 /usr/bin/ar qc libspglib.a CMakeFiles/spglib.dir/cell.c.o CMakeFiles/spglib.dir/debug.c.o CMakeFiles/spglib.dir/hall_symbol.c.o CMakeFiles/spglib.dir/lattice.c.o CMakeFiles/spglib.dir/mathfunc.c.o CMakeFiles/spglib.dir/pointgroup.c.o CMakeFiles/spglib.dir/primitive.c.o CMakeFiles/spglib.dir/refinement.c.o CMakeFiles/spglib.dir/spacegroup.c.o CMakeFiles/spglib.dir/spg_database.c.o CMakeFiles/spglib.dir/spglib.c.o CMakeFiles/spglib.dir/symmetry.c.o CMakeFiles/spglib.dir/kpoint.c.o CMakeFiles/spglib.dir/site_symmetry.c.o CMakeFiles/spglib.dir/sitesym_database.c.o CMakeFiles/spglib.dir/spglib_f.c.o CMakeFiles/spglib.dir/spin.c.o CMakeFiles/spglib.dir/tetrahedron_method.c.o /usr/bin/ranlib libspglib.a make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 57%] Built target spglib /usr/bin/make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 57%] Generating ui_ceviewoptionswidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui [ 57%] Generating moc_crystallographyextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx_parameters [ 57%] Generating moc_crystalpastedialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx_parameters [ 57%] Generating ui/moc_ceabstractdockwidget.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx_parameters [ 58%] Generating ui/moc_ceabstracteditor.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx_parameters [ 58%] Generating ui/moc_cecoordinateeditor.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx_parameters [ 58%] Generating ui/moc_cematrixeditor.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters [ 58%] Generating ui/moc_ceparametereditor.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters [ 58%] Generating ui/moc_ceslabbuilder.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters [ 58%] Generating ui/moc_cetranslatewidget.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx_parameters [ 58%] Generating ui/moc_ceviewoptionswidget.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx_parameters [ 58%] Generating ui_crystalpastedialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.ui [ 58%] Generating ui_cecoordinateeditor.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.ui [ 59%] Generating ui_cematrixeditor.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui [ 59%] Generating ui_ceparametereditor.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui [ 59%] Generating ui_ceslabbuilder.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui [ 59%] Generating ui_cetranslatewidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.ui cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= Scanning dependencies of target crystallographyextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 59%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp:18: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 59%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 59%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 59%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 62%] Linking CXX shared module ../../../../libx32/crystallographyextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../../libx32/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU spglib/libspglib.a make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 62%] Built target crystallographyextension /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 62%] Generating ui_tab_cd.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_tab_cd.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_cd.ui [ 62%] Generating moc_spectraextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters [ 62%] Generating moc_spectradialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters [ 62%] Generating moc_spectratype.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectratype.cxx_parameters [ 62%] Generating moc_abstract_ir.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx_parameters [ 62%] Generating moc_ir.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters [ 62%] Generating moc_nmr.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters [ 63%] Generating moc_dos.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters [ 63%] Generating moc_uv.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_uv.cxx_parameters [ 63%] Generating moc_cd.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_cd.cxx_parameters [ 63%] Generating moc_raman.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_raman.cxx_parameters [ 63%] Generating ui_spectradialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_spectradialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.ui [ 63%] Generating ui_tab_ir_raman.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_ir_raman.ui [ 63%] Generating ui_tab_nmr.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_tab_nmr.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_nmr.ui [ 63%] Generating ui_tab_dos.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_tab_dos.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_dos.ui [ 64%] Generating ui_tab_uv.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_tab_uv.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_uv.ui cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= Scanning dependencies of target spectraextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp:20: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp:21: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp:21: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp:20: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp:20: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp:20: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp:20: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp:20: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectraextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectradialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectratype.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_ir.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_ir.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_nmr.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_dos.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_dos.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_uv.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_uv.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_cd.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_cd.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_raman.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_raman.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 66%] Linking CXX shared module ../../../../libx32/spectraextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../../libx32/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 66%] Built target spectraextension /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 66%] Generating ui_vibrationwidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.ui [ 66%] Generating moc_vibrationextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters [ 66%] Generating moc_vibrationwidget.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= Scanning dependencies of target vibrationextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 67%] Linking CXX shared module ../../../../libx32/vibrationextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../../libx32/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 67%] Built target vibrationextension /usr/bin/make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 67%] Generating moc_slaterset.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters [ 67%] Generating moc_basisset.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters [ 67%] Generating moc_gaussianset.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= Scanning dependencies of target OpenQube make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 67%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/atom.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/atom.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/bits/stl_algobase.h:59, from /usr/include/c++/10.2.0/vector:60, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.cpp:17: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basisset.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/basisset.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basissetloader.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/basissetloader.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/cube.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/bits/stl_algobase.h:59, from /usr/include/c++/10.2.0/vector:60, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp:17: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp:17: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp:17: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/orca.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/orca.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qstringlist.h:45, from /usr/include/qt4/QtCore/QStringList:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.h:20, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp:17: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianset.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/gaussianset.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/molden.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp:17: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/molecule.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp:17: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/mopacaux.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qtextstream.h:45, from /usr/include/qt4/QtCore/QTextStream:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp:17: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/slaterset.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/slaterset.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/new:40, from /usr/include/eigen3/Eigen/Core:82, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 69%] Linking CXX shared library ../../../../../libx32/libavogadro_OpenQube.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../libx32/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/orca.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -Wl,-rpath,::::::::::: -lQtCore -lQtGui cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../libx32/libavogadro_OpenQube.so.0.1.0 ../../../../../libx32/libavogadro_OpenQube.so.0 ../../../../../libx32/libavogadro_OpenQube.so make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 69%] Built target OpenQube /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 69%] Generating ui_orbitalsettingsdialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui [ 69%] Generating moc_orbitalextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters [ 69%] Generating moc_orbitalsettingsdialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters [ 69%] Generating moc_orbitaltablemodel.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters [ 69%] Generating moc_orbitalwidget.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters [ 69%] Generating moc_vdwsurface.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters [ 69%] Generating qtiocompressor/moc_qtiocompressor.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters [ 69%] Generating moc_htmldelegate.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters [ 70%] Generating ui_orbitalwidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.ui cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= Scanning dependencies of target orbitalextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, from /usr/include/qt4/QtGui/QStyledItemDelegate:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, from /usr/include/qt4/QtGui/QStyledItemDelegate:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 71%] Linking CXX shared module ../../../../libx32/orbitalextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../../libx32/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../../libx32/libavogadro_OpenQube.so.0.1.0 ../../../../libx32/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 71%] Built target orbitalextension /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 72%] Generating ui_surfacedialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.ui [ 72%] Generating moc_surfaceextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters [ 72%] Generating moc_surfacedialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 73%] Linking CXX shared module ../../../../libx32/surfaceextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../../libx32/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../../libx32/libavogadro_OpenQube.so.0.1.0 ../../../../libx32/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 73%] Built target surfaceextension /usr/bin/make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= Scanning dependencies of target qube make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 73%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/qube.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/qube.dir/qube.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/iostream:38, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 73%] Linking CXX executable ../../../../../bin/qube cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../../../../bin/qube -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../../../libx32/libavogadro_OpenQube.so.0.1.0 -lQtOpenGL -lQtGui -lQtCore make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 73%] Built target qube /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= Scanning dependencies of target tubegen make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 73%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Bitmap.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/tubegen.dir/Bitmap.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.c [ 73%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Core3DMath.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/tubegen.dir/Core3DMath.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c [ 73%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/x86_64-pld-linux-gnux32-gcc -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -O3 -DNDEBUG -fPIC -w -o CMakeFiles/tubegen.dir/eprintf.c.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c [ 73%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/ANSR.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp [ 73%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/Cell.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp [ 73%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp [ 73%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp [ 73%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp [ 74%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp [ 74%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp [ 74%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp [ 74%] Linking CXX static library libtubegen.a cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 /usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o /usr/bin/ranlib libtubegen.a make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 74%] Built target tubegen /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 74%] Generating ui_swcntbuilderwidget.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui [ 74%] Generating moc_swcntbuilderextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters [ 74%] Generating moc_swcntbuilderwidget.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters [ 74%] Generating moc_avotubegen.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= Scanning dependencies of target swcntbuilderextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 74%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 74%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 74%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 75%] Linking CXX shared module ../../../../libx32/swcntbuilderextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../../libx32/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU tubegen/libtubegen.a make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 75%] Built target swcntbuilderextension /usr/bin/make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_qtaimextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= Scanning dependencies of target qtaimextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 75%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/cmath:41, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/QtGlobal:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h:30, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp:48: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:39: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 76%] Linking CXX shared module ../../../../libx32/qtaimextension.so cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../../../libx32/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -Wl,-rpath,/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libx32: ../../../../libx32/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 76%] Built target qtaimextension /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 77%] Generating ui_gamessefpmatchdialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui [ 77%] Generating moc_inputdialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters [ 77%] Generating moc_gamessextension.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters [ 77%] Generating moc_gamessinputdialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters [ 77%] Generating moc_gamesshighlighter.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters [ 77%] Generating moc_gamessefpmatchdialog.cxx cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/libx32/qt4/bin/moc @/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters [ 77%] Generating ui_gamessinputdialog.h cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/libx32/qt4/bin/uic -o /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.AobQRi/BUILD/avogadro-1.2.0 /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= Scanning dependencies of target gamessextension make[2]: Leaving directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[2]: Entering directory '/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/iostream:38, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp In file included from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/os_defines.h:39, from /usr/include/c++/10.2.0/x86_64-pld-linux-gnux32/bits/c++config.h:518, from /usr/include/c++/10.2.0/utility:68, from /usr/include/c++/10.2.0/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, from /tmp/B.AobQRi/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o cd /tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/x86_64-pld-linux-gnux32-g++ -DENABLE_GLSL -DENABLE_PYTHON -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/include -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/tmp/B.AobQRi/BUILD/avogadro-1.2.0/build