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parallel-netcdf 5170e7f2-7a88-4cc6-91ac-a162dd0f945f

Status:OK
Source URL:https://buildlogs.pld-linux.org/pld/th/x86_64/OK/parallel-netcdf,5170e7f2-7a88-4cc6-91ac-a162dd0f945f.bz2
text/plain URL:View!
full text:View!
rpm -qa of builder:View!
Date:2020/11/22 21:48:33
Runtime:0:09:12.542931

Toc:

  • error 1
  • rpm: error: Failed build dependencies:
  • error 2
  • rpm: error: Failed build dependencies:
  • prep
  • Executing(%prep): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.93728
  • build
  • Executing(%build): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.93728
  • install
  • Executing(%install): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.61929
  • files parallel-netcdf
  • Processing files: parallel-netcdf-1.12.1-1.x86_64
  • doc
  • Executing(%doc): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.16557
  • files parallel-netcdf-devel
  • Processing files: parallel-netcdf-devel-1.12.1-1.x86_64
  • files parallel-netcdf-static
  • Processing files: parallel-netcdf-static-1.12.1-1.x86_64
  • files parallel-netcdf-apidocs
  • Processing files: parallel-netcdf-apidocs-1.12.1-1.noarch
  • doc
  • Executing(%doc): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.16557
  • files parallel-netcdf-debuginfo
  • Processing files: parallel-netcdf-debuginfo-1.12.1-1.x86_64
  • clean
  • Executing(%clean): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.17513

Content:

checking if we should skip the build
started at: Sun Nov 22 21:39:07 2020
killing old processes on a builder
sending signal 9 to pid -1
Killed
cleaning up /tmp
fetching https://srcbuilder.pld-linux.org/th//srpms/5170e7f2-7a88-4cc6-91ac-a162dd0f945f/parallel-netcdf-1.12.1-1.src.rpm
fetched 2332220 bytes, 3017.2 K/s
installing srpm: parallel-netcdf-1.12.1-1.src.rpm
+ install -d /tmp/B.RBzZGJ/BUILD /tmp/B.RBzZGJ/RPMS
+ LC_ALL=en_US.UTF-8
+ rpm -qp --changelog parallel-netcdf-1.12.1-1.src.rpm
* Sun Nov 22 2020 PLD Linux Team <feedback@pld-linux.org>
- For complete changelog see: http://git.pld-linux.org/?p=packages/parallel-netcdf.git;a=log;h=master
* Sun Nov 22 2020 Jakub Bogusz <qboosh@pld-linux.org> 1b83130
- use -fallow-argument-mismatch for gfortran 10+ * Wed Nov 11 2020 Jakub Bogusz <qboosh@pld-linux.org> bf13cf4
- updated to 1.12.1 * Sun Dec 08 2019 Jakub Bogusz <qboosh@pld-linux.org> 371cf8f
- updated to 1.12.0 - updated sh patch + rpm -Uhv --nodeps --define '_topdir /tmp/B.RBzZGJ' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' parallel-netcdf-1.12.1-1.src.rpm Preparing... ################################################## parallel-netcdf ################################################## + rm -f parallel-netcdf-1.12.1-1.src.rpm + install -m 700 -d /tmp/B.RBzZGJ/BUILD/tmp + TMPDIR=/tmp/B.RBzZGJ/BUILD/tmp + exec nice -n 0 rpmbuild -bp --short-circuit --nodeps --define '_topdir /tmp/B.RBzZGJ' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x86_64-pld-linux --define 'prep exit 0' /tmp/B.RBzZGJ/parallel-netcdf.spec Building target platforms: x86_64-pld-linux checking BuildConflict-ing packages no BuildConflicts found checking BR rpm: error: Failed build dependencies: rpm: mpich-fortran-devel is needed by parallel-netcdf-1.12.1-1.src rpm: Building target platforms: x86_64-pld-linux updating poldek cache... ready is up to date th is up to date th is up to date th-ready is up to date th-ready is up to date th-test is up to date th-test is up to date checking conflicting packages in BRed packages poldek: Loading [pndir]ready... poldek: Loading [pndir]th-test... poldek: Loading [pndir]th-test... poldek: Loading [pndir]th-ready... poldek: Loading [pndir]th-ready... poldek: Loading [pndir]th... poldek: Loading [pndir]th... poldek: 30780 packages read poldek: Removed 2069 duplicate packages from available set poldek: Processing dependencies... poldek: mpich-fortran-devel-3.1.4-1.x86_64 marks mpich-fortran-3.1.4-1.x86_64 (cap mpich-fortran = 3.1.4-1) poldek: There are 2 packages to install (1 marked by dependencies): poldek: A mpich-fortran-3.1.4-1.x86_64 mpich-fortran-devel-3.1.4-1.x86_64 poldek: This operation will use 719.2KB of disk space. poldek: Need to get 283.7KB of archives. poldek: Executing pm-command.sh --upgrade -vh --test --root / --define _check_dirname_deps 1... poldek: Preparing... ################################################## no conflicts found checking BR rpm: error: Failed build dependencies: rpm: mpich-fortran-devel is needed by parallel-netcdf-1.12.1-1.src rpm: Building target platforms: x86_64-pld-linux installing BR: mpich\-fortran\-devel + poldek --noask --caplookup -Q -v '--ignore=hhvm-*' '--ignore=php4-*' '--ignore=php52-*' '--ignore=php54-*' '--ignore=php55-*' '--ignore=php56-*' '--ignore=php70-*' '--ignore=php71-*' '--ignore=php72-*' '--ignore=php73-*' '--ignore=php74-*' '--ignore=php80-*' --upgrade mpich-fortran-devel Loading [pndir]ready... Loading [pndir]th-test... Loading [pndir]th-test... Loading [pndir]th-ready... Loading [pndir]th-ready... Loading [pndir]th... Loading [pndir]th... 30780 packages read Removed 2069 duplicate packages from available set Processing dependencies... mpich-fortran-devel-3.1.4-1.x86_64 marks mpich-fortran-3.1.4-1.x86_64 (cap mpich-fortran = 3.1.4-1) There are 2 packages to install (1 marked by dependencies): A mpich-fortran-3.1.4-1.x86_64 mpich-fortran-devel-3.1.4-1.x86_64 This operation will use 719.2KB of disk space. Need to get 283.7KB of archives. Executing pm-command.sh --upgrade -vh --root / --define _check_dirname_deps 1... Preparing... ################################################## mpich-fortran ################################################## mpich-fortran-devel ################################################## building RPM using: set -ex; : build-id: 5170e7f2-7a88-4cc6-91ac-a162dd0f945f; TMPDIR=/tmp/B.RBzZGJ/BUILD/tmp exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.RBzZGJ' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x86_64-pld-linux /tmp/B.RBzZGJ/parallel-netcdf.spec + : build-id: 5170e7f2-7a88-4cc6-91ac-a162dd0f945f + TMPDIR=/tmp/B.RBzZGJ/BUILD/tmp + exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.RBzZGJ' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x86_64-pld-linux /tmp/B.RBzZGJ/parallel-netcdf.spec Building target platforms: x86_64-pld-linux Executing(%prep): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.93728 + umask 022 + cd /tmp/B.RBzZGJ/BUILD + cd /tmp/B.RBzZGJ/BUILD + rm -rf pnetcdf-1.12.1 + /bin/gzip -dc /tmp/B.RBzZGJ/pnetcdf-1.12.1.tar.gz + /bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd pnetcdf-1.12.1 + /bin/id -u + '[' 1000 '=' 0 ']' + /bin/id -u + '[' 1000 '=' 0 ']' + /bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (parallel-netcdf-sh.patch):' Patch #0 (parallel-netcdf-sh.patch): + '[' -f /tmp/B.RBzZGJ/parallel-netcdf-sh.patch ']' + /bin/cat /tmp/B.RBzZGJ/parallel-netcdf-sh.patch + /usr/bin/patch -s -p1 + exit 0 Executing(%build): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.93728 TMP=/home/users/builder/tmp HOME=/home/users/builder PATH=/home/users/builder/GNUstep/Tools:/bin:/usr/bin:/usr/local/bin:/home/users/builder/bin TMPDIR=/tmp/B.RBzZGJ/BUILD/tmp + umask 022 + cd /tmp/B.RBzZGJ/BUILD + cd pnetcdf-1.12.1 + libtoolize --copy --force --install libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, './scripts'. libtoolize: copying file './scripts/config.guess' libtoolize: copying file './scripts/config.sub' libtoolize: copying file './scripts/install-sh' libtoolize: copying file './scripts/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' + aclocal -I m4 fatal: not a git repository (or any of the parent directories): .git fatal: not a git repository (or any of the parent directories): .git + autoconf fatal: not a git repository (or any of the parent directories): .git + autoheader + automake -a -c -f --foreign fatal: not a git repository (or any of the parent directories): .git configure.ac:307: installing './scripts/compile' configure.ac:44: installing './scripts/missing' benchmarks/C/Makefile.am: installing './scripts/depcomp' + FFLAGS='-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch' + FCFLAGS='-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch' + ./configure 'LDFLAGS=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' 'CFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 ' 'CXXFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 ' 'FFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch' 'FCFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch' 'CPPFLAGS=' 'CC=x86_64-pld-linux-gcc' 'CXX=x86_64-pld-linux-g++' '--host=x86_64-pld-linux' '--build=x86_64-pld-linux' '--prefix=/usr' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' '--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' '--libdir=/usr/lib64' '--libexecdir=/usr/libexec' '--localstatedir=/var' '--sharedstatedir=/var/lib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--x-libraries=/usr/lib64' --enable-doxygen --disable-silent-rules --enable-shared checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for rm... yes checking for mawk... (cached) mawk checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a sed that does not truncate output... /bin/sed checking for sed handling option -i ... /bin/sed -i'' checking for x86_64-pld-linux-gcc... /usr/bin/x86_64-pld-linux-gcc checking for x86_64-pld-linux-gcc... /usr/bin/x86_64-pld-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/bin/x86_64-pld-linux-gcc accepts -g... yes checking for /usr/bin/x86_64-pld-linux-gcc option to accept ISO C89... none needed checking whether /usr/bin/x86_64-pld-linux-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of /usr/bin/x86_64-pld-linux-gcc ... gcc3 checking how to run the C preprocessor... /usr/bin/x86_64-pld-linux-gcc -E checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for MPI_Comm_rank... no checking for library containing MPI_Comm_rank... -lmpi checking for MPI_File_open... yes checking MPI C compiler base... GCC checking MPI Standard version implemented... 3.0 checking whether MPICH_VERSION is declared... yes checking whether MPICH2_VERSION is declared... no checking whether OMPI_MAJOR_VERSION is declared... no checking whether MVAPICH2_VERSION is declared... no checking MPI vendor... MPICH 3.1.4 checking whether /usr/bin/x86_64-pld-linux-gcc is a wrapper of a C++ compiler... no checking build system type... x86_64-pld-linux-gnu checking host system type... x86_64-pld-linux-gnu checking for x86_64-pld-linux-ar... no checking for x86_64-pld-linux-lib... no checking for x86_64-pld-linux-link... no checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... print -r checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by /usr/bin/x86_64-pld-linux-gcc ... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pld-linux-gnu file names to x86_64-pld-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pld-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-pld-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-pld-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... print -r -- checking for x86_64-pld-linux-ar... ar checking for archiver @FILE support... @ checking for x86_64-pld-linux-strip... no checking for strip... strip checking for x86_64-pld-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /usr/bin/x86_64-pld-linux-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-pld-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /usr/bin/x86_64-pld-linux-gcc supports -fno-rtti -fno-exceptions... no checking for /usr/bin/x86_64-pld-linux-gcc option to produce PIC... -fPIC -DPIC checking if /usr/bin/x86_64-pld-linux-gcc PIC flag -fPIC -DPIC works... yes checking if /usr/bin/x86_64-pld-linux-gcc static flag -static works... no checking if /usr/bin/x86_64-pld-linux-gcc supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/x86_64-pld-linux-gcc supports -c -o file.o... (cached) yes checking whether the /usr/bin/x86_64-pld-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... rm: cannot remove 'conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for x86_64-pld-linux-g++... /usr/bin/x86_64-pld-linux-g++ checking whether we are using the GNU C++ compiler... yes checking whether /usr/bin/x86_64-pld-linux-g++ accepts -g... yes checking dependency style of /usr/bin/x86_64-pld-linux-g++ ... gcc3 checking how to run the C++ preprocessor... /usr/bin/x86_64-pld-linux-g++ -E checking for ld used by /usr/bin/x86_64-pld-linux-g++ ... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /usr/bin/x86_64-pld-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /usr/bin/x86_64-pld-linux-g++ option to produce PIC... -fPIC -DPIC checking if /usr/bin/x86_64-pld-linux-g++ PIC flag -fPIC -DPIC works... yes checking if /usr/bin/x86_64-pld-linux-g++ static flag -static works... no checking if /usr/bin/x86_64-pld-linux-g++ supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/x86_64-pld-linux-g++ supports -c -o file.o... (cached) yes checking whether the /usr/bin/x86_64-pld-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for MPI_File_close... yes checking whether MPI C++ compiler redefines SEEK_SET ... yes checking for mpif77... /usr/bin/mpif77 checking for mpif90... /usr/bin/mpif90 checking for x86_64-pld-linux-g77... /usr/bin/mpif77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether /usr/bin/mpif77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /usr/bin/mpif77 option to produce PIC... -fPIC checking if /usr/bin/mpif77 PIC flag -fPIC works... yes checking if /usr/bin/mpif77 static flag -static works... no checking if /usr/bin/mpif77 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif77 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif77... -v checking for Fortran 77 libraries of /usr/bin/mpif77... -L/usr/lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../.. -lmpi -lmpifort -lgfortran -lm -lquadmath checking whether /usr/bin/mpif77 is a valid MPI compiler... yes checking for x86_64-pld-linux-gfortran... /usr/bin/mpif90 checking whether we are using the GNU Fortran compiler... yes checking whether /usr/bin/mpif90 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /usr/bin/mpif90 option to produce PIC... -fPIC checking if /usr/bin/mpif90 PIC flag -fPIC works... yes checking if /usr/bin/mpif90 static flag -static works... no checking if /usr/bin/mpif90 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif90... -v checking for Fortran libraries of /usr/bin/mpif90... -L/usr/lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../.. -lmpi -lmpifort -lgfortran -lm -lquadmath checking whether mpi.mod is available... yes checking whether /usr/bin/mpif90 is a valid MPI compiler... yes checking for Fortran flag needed to accept free-form source... -ffree-form checking for Fortran flag to compile preprocessed .F files... none checking for Fortran flag to compile preprocessed .F90 files... none checking for Fortran flag to compile preprocessed .F files... (cached) none checking how to define symbols for preprocessed Fortran... -D checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .F files... none checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .F90 files... none checking for Fortran flag needed to accept fixed-form source... -ffixed-form checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for C-equivalent to Fortran routine "SUB_A"... sub_a_ checking if MPI Fortran 90 compiler is NAG Fortran... no checking Fortran compiler treating constant modifier... 8 checking Fortran 90 module extension... mod checking Fortran 90 module inclusion flag... -I checking Fortran 90 module extension... (cached) mod checking whether Fortran 90 compiler capitalizes .mod filenames... no configure: creating ./config.lt config.lt: creating libtool rm: cannot remove 'libtoolT': No such file or directory checking whether MPI library is built with shared library support... yes checking for m4... m4 checking m4 additional flags... none needed checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for IEEE floating point format... yes checking whether strdup is declared... yes checking for strdup... yes checking whether strerror is declared... yes checking for strerror... yes checking whether access is declared... yes checking for access... yes checking whether unlink is declared... yes checking for unlink... yes checking whether strcasecmp is declared... yes checking for strcasecmp... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking whether tsearch is declared... yes checking for tsearch... yes checking whether tdelete is declared... yes checking for tdelete... yes checking size of MPI_Offset... 8 checking size of MPI_Aint... 8 checking whether MPI_COMBINER_HVECTOR_INTEGER is defined... yes checking whether MPI_COMBINER_HINDEXED_INTEGER is defined... yes checking whether MPI_COMBINER_STRUCT_INTEGER is defined... yes checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for schar... no checking for uchar... no checking for ushort... yes checking for uint... yes checking for longlong... no checking for ulonglong... no checking for int64... no checking for uint64... no checking size of size_t... 8 checking size of off_t... 8 checking size of char... 1 checking size of signed char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short int... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of ptrdiff_t... 8 checking size of ushort... 2 checking size of uint... 4 checking size of MPI_Fint... 4 checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "integer*1"... yes checking for Fortran "integer*2"... yes checking for Fortran "integer*8"... yes checking if Fortran "integer*1" is ... "signed char" in C checking if Fortran "integer*2" is ... "short" in C checking if Fortran "integer*8" is ... "int" in C checking if Fortran "integer" is ... "int" in C checking if Fortran "real" is ... "float" in C checking if Fortran "doubleprecision" is ... "double" in C checking for Fortran 77 GNU intrinsic INT... yes checking for Fortran 77 intrinsic INT1... no checking for Fortran 77 intrinsic INT2... yes checking for Fortran 77 intrinsic INT8... yes checking for gcov... gcov checking if C++ macro __func__ or __FUNCTION__ is defined... yes checking for latex... /usr/bin/latex checking for dvipdf... /usr/bin/dvipdf checking for mpiexec... /usr/bin/mpiexec checking for gcc... /usr/bin/gcc checking C compiler for serial utility programs... /usr/bin/gcc checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dispatchers/Makefile config.status: creating src/libs/Makefile config.status: creating src/include/Makefile config.status: creating src/include/pnetcdf.h config.status: creating src/drivers/Makefile config.status: creating src/drivers/common/Makefile config.status: creating src/drivers/include/Makefile config.status: creating src/drivers/ncmpio/Makefile config.status: creating src/drivers/nc4io/Makefile config.status: creating src/drivers/ncadios/Makefile config.status: creating src/drivers/ncbbio/Makefile config.status: creating src/drivers/ncfoo/Makefile config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/pnetcdf.inc config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/pnetcdf.f90 config.status: creating src/binding/f90/api.fh config.status: creating src/binding/f90/nfmpi_constants.fh config.status: creating src/utils/Makefile config.status: creating src/utils/ncoffsets/Makefile config.status: creating src/utils/pnetcdf_version/Makefile config.status: creating src/utils/ncvalidator/Makefile config.status: creating src/utils/ncmpidiff/Makefile config.status: creating src/utils/ncmpidump/Makefile config.status: creating src/utils/ncmpigen/Makefile config.status: creating src/utils/ncmpilogdump/Makefile config.status: creating src/utils/pnetcdf-config config.status: creating src/packaging/Makefile config.status: creating src/packaging/pnetcdf.pc config.status: creating examples/Makefile config.status: creating examples/adios/Makefile config.status: creating examples/C/Makefile config.status: creating examples/tutorial/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/F77/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/burst_buffer/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/C/Makefile config.status: creating benchmarks/FLASH-IO/Makefile config.status: creating doc/Makefile config.status: creating doc/pnetcdf-api/Makefile config.status: creating man/Makefile config.status: creating test/Makefile config.status: creating test/common/Makefile config.status: creating test/C/Makefile config.status: creating test/fandc/Makefile config.status: creating test/nc_test/Makefile config.status: creating test/cdf_format/Makefile config.status: creating test/nc4/Makefile config.status: creating test/adios/Makefile config.status: creating test/header/Makefile config.status: creating test/testcases/Makefile config.status: creating test/nonblocking/Makefile config.status: creating test/largefile/Makefile config.status: creating test/CXX/Makefile config.status: creating test/subfile/Makefile config.status: creating test/nf_test/Makefile config.status: creating test/nf_test/tests.inc config.status: creating test/nf90_test/Makefile config.status: creating test/nf90_test/tests.inc config.status: creating test/F90/Makefile config.status: creating test/burst_buffer/Makefile config.status: creating src/include/config.h config.status: executing depfiles commands config.status: executing libtool commands rm: cannot remove 'libtoolT': No such file or directory ------------------------------------------------------------------------------ PnetCDF Version 1.12.1 Features: Build static libraries - yes Build shared libraries - yes Build Fortran APIs - yes Build C++ APIs - yes Compilers: MPICC = /usr/bin/x86_64-pld-linux-gcc MPICXX = /usr/bin/x86_64-pld-linux-g++ MPIF77 = /usr/bin/mpif77 MPIF90 = /usr/bin/mpif90 CFLAGS = -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 CXXFLAGS = -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 FFLAGS = -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch FCFLAGS = -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch LDFLAGS = -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc LIBS = -lmpi Now run 'make' to build the library and utility tools. Then run 'make [<target>]' for testing and installation, where the optional <target> can be: tests - build all test programs (build only, no run) check - run sequential test programs ptest - run parallel test programs on 4 MPI processes ptests - run parallel test programs on 3,4,6,8 MPI processes install - install PnetCDF library in /usr ------------------------------------------------------------------------------ + /usr/bin/make -Otarget -j9 Making all in src Making all in include make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/include' (CDPATH="${ZSH_VERSION+.}:" && cd ../.. && /bin/sh /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/scripts/missing autoheader) rm -f stamp-h1 touch config.h.in make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/include' make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/include' cd ../.. && /bin/sh ./config.status src/include/config.h config.status: creating src/include/config.h config.status: src/include/config.h is unchanged make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/include' /usr/bin/make all-am Making all in dispatchers make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/dispatchers' m4 -DPNETCDF -I../../m4 attr_getput.m4 >attr_getput.c make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/dispatchers' make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/dispatchers' m4 -DPNETCDF -I../../m4 var_getput.m4 >var_getput.c make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/dispatchers' /usr/bin/make all-am make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/dispatchers' /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT lib_version.lo -MD -MP -MF .deps/lib_version.Tpo -c -o lib_version.lo lib_version.c libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT lib_version.lo -MD -MP -MF .deps/lib_version.Tpo -c lib_version.c -fPIC -DPIC -o .libs/lib_version.o libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT lib_version.lo -MD -MP -MF .deps/lib_version.Tpo -c lib_version.c -o lib_version.o >/dev/null 2>&1 mv -f .deps/lib_version.Tpo .deps/lib_version.Plo make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/dispatchers' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/dispatchers' /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT error_codes.lo -MD -MP -MF .deps/error_codes.Tpo -c -o error_codes.lo error_codes.c libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT error_codes.lo -MD -MP -MF .deps/error_codes.Tpo -c error_codes.c -fPIC -DPIC -o .libs/error_codes.o libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT error_codes.lo -MD -MP -MF .deps/error_codes.Tpo -c error_codes.c -o error_codes.o >/dev/null 2>&1 mv -f .deps/error_codes.Tpo .deps/error_codes.Plo make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/dispatchers' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/dispatchers' /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT dimension.lo -MD -MP -MF .deps/dimension.Tpo -c -o dimension.lo dimension.c libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT dimension.lo -MD -MP -MF .deps/dimension.Tpo -c dimension.c -fPIC -DPIC -o .libs/dimension.o libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT dimension.lo -MD -MP -MF .deps/dimension.Tpo -c dimension.c -o dimension.o >/dev/null 2>&1 mv -f .deps/dimension.Tpo .deps/dimension.Plo make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/dispatchers' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/dispatchers' /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT attribute.lo -MD -MP -MF .deps/attribute.Tpo -c -o attribute.lo attribute.c libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT attribute.lo -MD -MP -MF .deps/attribute.Tpo -c attribute.c -fPIC -DPIC -o .libs/attribute.o libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments 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-I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT ncmpio_wait.lo -MD -MP -MF .deps/ncmpio_wait.Tpo -c ncmpio_wait.c -o ncmpio_wait.o >/dev/null 2>&1 mv -f .deps/ncmpio_wait.Tpo .deps/ncmpio_wait.Plo make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/drivers/ncmpio' make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/drivers/ncmpio' /bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/x86_64-pld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o libncmpio.la ncmpio_driver.lo ncmpio_create.lo ncmpio_open.lo ncmpio_enddef.lo ncmpio_close.lo ncmpio_sync.lo ncmpio_file_misc.lo ncmpio_header_get.lo ncmpio_header_put.lo ncmpio_dim.lo ncmpio_var.lo ncmpio_bput.lo ncmpio_filetype.lo ncmpio_wait.lo ncmpio_vard.lo ncmpio_fill.lo ncmpio_util.lo ncmpio_hash_func.lo ncmpio_file_io.lo ncmpio_getput.lo ncmpio_i_getput.lo ncmpio_varn.lo ncmpio_i_varn.lo ncmpio_attr.lo -lmpi libtool: link: ar cru .libs/libncmpio.a .libs/ncmpio_driver.o .libs/ncmpio_create.o .libs/ncmpio_open.o .libs/ncmpio_enddef.o .libs/ncmpio_close.o .libs/ncmpio_sync.o .libs/ncmpio_file_misc.o .libs/ncmpio_header_get.o .libs/ncmpio_header_put.o .libs/ncmpio_dim.o .libs/ncmpio_var.o .libs/ncmpio_bput.o .libs/ncmpio_filetype.o .libs/ncmpio_wait.o .libs/ncmpio_vard.o .libs/ncmpio_fill.o .libs/ncmpio_util.o 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-I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT xstrerrorf.lo -MD -MP -MF .deps/xstrerrorf.Tpo -c xstrerrorf.c -o xstrerrorf.o >/dev/null 2>&1 mv -f .deps/xstrerrorf.Tpo .deps/xstrerrorf.Plo make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77' /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT allf.lo -MD -MP -MF .deps/allf.Tpo -c -o allf.lo allf.c libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT allf.lo -MD -MP -MF .deps/allf.Tpo -c allf.c -fPIC -DPIC -o .libs/allf.o libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT allf.lo -MD -MP -MF .deps/allf.Tpo -c allf.c -o allf.o >/dev/null 2>&1 mv -f .deps/allf.Tpo .deps/allf.Plo make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77' /bin/sh ../../../libtool --tag=F77 --mode=link /usr/bin/mpif77 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o libf77.la strerrorf.lo strerrnof.lo inq_libversf.lo issyserrf.lo xstrerrorf.lo xstrerrnof.lo xinq_libversf.lo allf.lo -lmpi libtool: link: ar cru .libs/libf77.a .libs/strerrorf.o .libs/strerrnof.o .libs/inq_libversf.o .libs/issyserrf.o .libs/xstrerrorf.o .libs/xstrerrnof.o .libs/xinq_libversf.o .libs/allf.o libtool: link: ranlib .libs/libf77.a libtool: link: ( cd ".libs" && rm -f "libf77.la" && ln -s "../libf77.la" "libf77.la" ) make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77' Making all in f90 make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' m4 -DPNETCDF -DINTENTV=INOUT getput_text.m4 >getput_text.fh make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' m4 -DPNETCDF -DINTENTV=INOUT getput_vard.m4 >getput_vard.fh make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' m4 -DPNETCDF -DINTENTV=INOUT getput_varn.m4 >getput_varn.fh make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' m4 -DPNETCDF -DINTENTV=INOUT getput_var.m4 >getput_var.fh make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' /usr/bin/make all-am make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' /bin/sh ../../../libtool --tag=FC --mode=compile /usr/bin/mpif90 -I. -I. -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o pnetcdf.lo pnetcdf.f90 libtool: compile: /usr/bin/mpif90 -I. -I. -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c pnetcdf.f90 -fPIC -o .libs/pnetcdf.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran getput_vard.fh:1988:86: 1988 | nf90mpi_get_vard_7D_EightByteInt_all = nfmpi_get_vard_all(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2324 | nf90mpi_get_vard_7D_text_all = nfmpi_get_vard_all(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_vard.fh:1558:86: 1558 | nf90mpi_put_vard_7D_EightByteInt_all = nfmpi_put_vard_all(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2253 | nf90mpi_put_vard_7D_text_all = nfmpi_put_vard_all(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_vard.fh:1128:78: 1128 | nf90mpi_get_vard_7D_EightByteInt = nfmpi_get_vard(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2178 | nf90mpi_get_vard_7D_text = nfmpi_get_vard(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_vard.fh:698:78: 698 | nf90mpi_put_vard_7D_EightByteInt = nfmpi_put_vard(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2107 | nf90mpi_put_vard_7D_text = nfmpi_put_vard(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_var.fh:23249:84: 23249 | nfmpi_bput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 1 ...... 23782 | nfmpi_bput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:23257:79: 23257 | nfmpi_bput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 1 ...... 23790 | nfmpi_bput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:23265:66: 23265 | nfmpi_bput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 1 ...... 23798 | nfmpi_bput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:20047:84: 20047 | nfmpi_iget_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 1 ...... 20580 | nfmpi_iget_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:20055:79: 20055 | nfmpi_iget_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 1 ...... 20588 | nfmpi_iget_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:20063:66: 20063 | nfmpi_iget_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 1 ...... 20596 | nfmpi_iget_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:16845:84: 16845 | nfmpi_iput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 1 ...... 17378 | nfmpi_iput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:16853:79: 16853 | nfmpi_iput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 1 ...... 17386 | nfmpi_iput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:16861:66: 16861 | nfmpi_iput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 1 ...... 17394 | nfmpi_iput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:13645:87: 13645 | nfmpi_get_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 14171 | nfmpi_get_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:13653:82: 13653 | nfmpi_get_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 14179 | nfmpi_get_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:13661:69: 13661 | nfmpi_get_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 14187 | nfmpi_get_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:10486:87: 10486 | nfmpi_put_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 11012 | nfmpi_put_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:10494:82: 10494 | nfmpi_put_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 11020 | nfmpi_put_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:10502:69: 10502 | nfmpi_put_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 11028 | nfmpi_put_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:7326:83: 7326 | nfmpi_get_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 7852 | nfmpi_get_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:7334:78: 7334 | nfmpi_get_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 7860 | nfmpi_get_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:7342:65: 7342 | nfmpi_get_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 7868 | nfmpi_get_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:4166:83: 4166 | nfmpi_put_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 4692 | nfmpi_put_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:4174:78: 4174 | nfmpi_put_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 4700 | nfmpi_put_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:4182:65: 4182 | nfmpi_put_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 4708 | nfmpi_put_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:1513:50: 1513 | nfmpi_bput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 1 ...... 1550 | nfmpi_bput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:1286:50: 1286 | nfmpi_iget_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 1 ...... 1323 | nfmpi_iget_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:1059:50: 1059 | nfmpi_iput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 1 ...... 1096 | nfmpi_iput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:832:53: 832 | nfmpi_get_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 868 | nfmpi_get_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:615:49: 615 | nfmpi_get_var1(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 651 | nfmpi_get_var1(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:398:53: 398 | nfmpi_put_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 434 | nfmpi_put_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:181:49: 181 | nfmpi_put_var1(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 217 | nfmpi_put_var1(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). variables.fh:215:81: 215 | nf90mpi_inq_var_fill_FourByteReal = nfmpi_inq_var_fill(ncid, varid, no_fill, fill_value) | 1 ...... 224 | nf90mpi_inq_var_fill_EightByteReal = nfmpi_inq_var_fill(ncid, varid, no_fill, fill_value) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). variables.fh:151:81: 151 | nf90mpi_def_var_fill_FourByteReal = nfmpi_def_var_fill(ncid, varid, no_fill, fill_value) | 1 ...... 159 | nf90mpi_def_var_fill_EightByteReal = nfmpi_def_var_fill(ncid, varid, no_fill, fill_value) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). libtool: compile: /usr/bin/mpif90 -I. -I. -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c pnetcdf.f90 -o pnetcdf.o >/dev/null 2>&1 make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' /bin/sh ../../../libtool --tag=FC --mode=link /usr/bin/mpif90 -I. -I. -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o libf90.la pnetcdf.lo -lmpi libtool: warning: '/usr/lib64/../lib64/libquadmath.la' seems to be moved libtool: link: ar cru .libs/libf90.a .libs/pnetcdf.o libtool: link: ranlib .libs/libf90.a libtool: link: ( cd ".libs" && rm -f "libf90.la" && ln -s "../libf90.la" "libf90.la" ) make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' make[3]: Nothing to be done for 'all-am'. Making all in packaging make[2]: Nothing to be done for 'all'. Making all in . make[2]: Nothing to be done for 'all-am'. Making all in libs make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs' /bin/sh ../../libtool --tag=CXX --mode=link /usr/bin/x86_64-pld-linux-g++ -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -version-info 4:1:0 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o libpnetcdf.la -rpath /usr/lib64 ../dispatchers/libdispatchers.la ../drivers/common/libcommon.la ../drivers/ncmpio/libncmpio.la ../binding/cxx/libcxx.la ../binding/f77/libf77.la ../binding/f90/libf90.la -L/usr/lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../.. -lmpi -lmpifort -lgfortran -lm -lquadmath -L/usr/lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../.. -lmpi -lmpifort -lgfortran -lm -lquadmath -lmpi libtool: warning: '/usr/lib64/../lib64/libquadmath.la' seems to be moved libtool: link: /usr/bin/x86_64-pld-linux-g++ -fPIC -DPIC -shared -nostdlib -O2 -gdwarf-4 -g2 -fstack-protector-strong -march=x86-64 -gdwarf-4 -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z -Wl,relro -Wl,-z -Wl,combreloc /usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-pld-linux/10.2.0/crtbeginS.o -Wl,--whole-archive ../dispatchers/.libs/libdispatchers.a ../drivers/common/.libs/libcommon.a ../drivers/ncmpio/.libs/libncmpio.a ../binding/cxx/.libs/libcxx.a ../binding/f77/.libs/libf77.a ../binding/f90/.libs/libf90.a -Wl,--no-whole-archive -L/usr/lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../.. /usr/lib64/libmpifort.so /usr/lib64/libgfortran.so -L/usr/lib64/../lib64 /usr/lib64/libquadmath.so /usr/lib64/libmpi.so -lopa -lrt -lpthread /usr/lib64/libstdc++.so -lm -lc -lgcc_s /usr/lib64/gcc/x86_64-pld-linux/10.2.0/crtendS.o /usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64/crtn.o -Wl,-soname -Wl,libpnetcdf.so.4 -o .libs/libpnetcdf.so.4.0.1 libtool: link: (cd ".libs" && rm -f "libpnetcdf.so.4" && ln -s "libpnetcdf.so.4.0.1" "libpnetcdf.so.4") libtool: link: (cd ".libs" && rm -f "libpnetcdf.so" && ln -s "libpnetcdf.so.4.0.1" "libpnetcdf.so") libtool: link: (cd .libs/libpnetcdf.lax/libdispatchers.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../dispatchers/.libs/libdispatchers.a") libtool: link: (cd .libs/libpnetcdf.lax/libcommon.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../drivers/common/.libs/libcommon.a") libtool: link: (cd .libs/libpnetcdf.lax/libncmpio.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../drivers/ncmpio/.libs/libncmpio.a") libtool: link: (cd .libs/libpnetcdf.lax/libcxx.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../binding/cxx/.libs/libcxx.a") libtool: link: (cd .libs/libpnetcdf.lax/libf77.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../binding/f77/.libs/libf77.a") libtool: link: (cd .libs/libpnetcdf.lax/libf90.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../binding/f90/.libs/libf90.a") libtool: link: ar cru .libs/libpnetcdf.a .libs/libpnetcdf.lax/libdispatchers.a/attr_getput.o .libs/libpnetcdf.lax/libdispatchers.a/attribute.o .libs/libpnetcdf.lax/libdispatchers.a/dimension.o .libs/libpnetcdf.lax/libdispatchers.a/error_codes.o .libs/libpnetcdf.lax/libdispatchers.a/file.o .libs/libpnetcdf.lax/libdispatchers.a/lib_version.o .libs/libpnetcdf.lax/libdispatchers.a/var_getput.o .libs/libpnetcdf.lax/libdispatchers.a/variable.o .libs/libpnetcdf.lax/libcommon.a/check_name.o .libs/libpnetcdf.lax/libcommon.a/convert_swap.o .libs/libpnetcdf.lax/libcommon.a/create_imaptype.o .libs/libpnetcdf.lax/libcommon.a/dtype_decode.o .libs/libpnetcdf.lax/libcommon.a/error_mpi2nc.o .libs/libpnetcdf.lax/libcommon.a/error_posix2nc.o .libs/libpnetcdf.lax/libcommon.a/hash_map.o .libs/libpnetcdf.lax/libcommon.a/mem_alloc.o .libs/libpnetcdf.lax/libcommon.a/ncx.o .libs/libpnetcdf.lax/libcommon.a/pack_unpack.o .libs/libpnetcdf.lax/libcommon.a/utf8proc.o .libs/libpnetcdf.lax/libcommon.a/utils.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_attr.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_bput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_close.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_create.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_dim.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_driver.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_enddef.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_file_io.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_file_misc.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_filetype.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_fill.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_getput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_hash_func.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_header_get.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_header_put.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_i_getput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_i_varn.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_open.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_sync.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_util.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_var.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_vard.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_varn.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_wait.o .libs/libpnetcdf.lax/libcxx.a/ncmpiAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiByte.o .libs/libpnetcdf.lax/libcxx.a/ncmpiChar.o .libs/libpnetcdf.lax/libcxx.a/ncmpiCheck.o .libs/libpnetcdf.lax/libcxx.a/ncmpiCompoundType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiDim.o .libs/libpnetcdf.lax/libcxx.a/ncmpiDouble.o .libs/libpnetcdf.lax/libcxx.a/ncmpiEnumType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiException.o .libs/libpnetcdf.lax/libcxx.a/ncmpiFile.o .libs/libpnetcdf.lax/libcxx.a/ncmpiFloat.o .libs/libpnetcdf.lax/libcxx.a/ncmpiGroup.o .libs/libpnetcdf.lax/libcxx.a/ncmpiGroupAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiInt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiInt64.o .libs/libpnetcdf.lax/libcxx.a/ncmpiOpaqueType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiShort.o .libs/libpnetcdf.lax/libcxx.a/ncmpiType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUbyte.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUint.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUint64.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUshort.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVar.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVarAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVlenType.o .libs/libpnetcdf.lax/libcxx.a/ncmpi_notyet.o .libs/libpnetcdf.lax/libf77.a/allf.o .libs/libpnetcdf.lax/libf77.a/inq_libversf.o .libs/libpnetcdf.lax/libf77.a/issyserrf.o .libs/libpnetcdf.lax/libf77.a/strerrnof.o .libs/libpnetcdf.lax/libf77.a/strerrorf.o .libs/libpnetcdf.lax/libf77.a/xinq_libversf.o .libs/libpnetcdf.lax/libf77.a/xstrerrnof.o .libs/libpnetcdf.lax/libf77.a/xstrerrorf.o .libs/libpnetcdf.lax/libf90.a/pnetcdf.o libtool: link: ranlib .libs/libpnetcdf.a libtool: link: rm -fr .libs/libpnetcdf.lax libtool: link: ( cd ".libs" && rm -f "libpnetcdf.la" && ln -s "../libpnetcdf.la" "libpnetcdf.la" ) make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs' Making all in utils Making all in ncmpigen make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT init.o -MD -MP -MF .deps/init.Tpo -c -o init.o init.c mv -f .deps/init.Tpo .deps/init.Po make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT escapes.o -MD -MP -MF .deps/escapes.Tpo -c -o escapes.o escapes.c mv -f .deps/escapes.Tpo .deps/escapes.Po make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT getfill.o -MD -MP -MF .deps/getfill.Tpo -c -o getfill.o getfill.c mv -f .deps/getfill.Tpo .deps/getfill.Po make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c mv -f .deps/main.Tpo .deps/main.Po make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT load.o -MD -MP -MF .deps/load.Tpo -c -o load.o load.c mv -f .deps/load.Tpo .deps/load.Po make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT genlib.o -MD -MP -MF .deps/genlib.Tpo -c -o genlib.o genlib.c mv -f .deps/genlib.Tpo .deps/genlib.Po make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT ncmpigentab.o -MD -MP -MF .deps/ncmpigentab.Tpo -c -o ncmpigentab.o ncmpigentab.c In file included from /usr/include/string.h:519, from ncmpigentab.c:6: In function 'strncpy', inlined from 'ncmpiparse' at ./ncmpigen.y:376:13: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ y.tab.c: In function 'ncmpiparse': ./ncmpigen.y:373:24: note: length computed here 373 | MPI_Offset len = strlen(termstring); | ^~~~~~~~~~~~~~~~~~ mv -f .deps/ncmpigentab.Tpo .deps/ncmpigentab.Po make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' /bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/x86_64-pld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o ncmpigen main.o load.o escapes.o getfill.o init.o genlib.o ncmpigentab.o ../../../src/libs/libpnetcdf.la -lmpi libtool: link: /usr/bin/x86_64-pld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z -Wl,relro -Wl,-z -Wl,combreloc -o .libs/ncmpigen main.o load.o escapes.o getfill.o init.o genlib.o ncmpigentab.o ../../../src/libs/.libs/libpnetcdf.so -L/usr/lib64 /usr/lib64/libmpifort.so /usr/lib64/libgfortran.so /usr/lib64/libquadmath.so /usr/lib64/libstdc++.so -lm /usr/lib64/libmpi.so -lopa -lrt -lpthread make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' Making all in ncmpidump make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT dumplib.o -MD -MP -MF .deps/dumplib.Tpo -c -o dumplib.o dumplib.c mv -f .deps/dumplib.Tpo .deps/dumplib.Po make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT ncmpidump.o -MD -MP -MF .deps/ncmpidump.Tpo -c -o ncmpidump.o ncmpidump.c mv -f .deps/ncmpidump.Tpo .deps/ncmpidump.Po make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT vardata.o -MD -MP -MF .deps/vardata.Tpo -c -o vardata.o vardata.c mv -f .deps/vardata.Tpo .deps/vardata.Po make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' /bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/x86_64-pld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o ncmpidump ncmpidump.o vardata.o dumplib.o ../../../src/libs/libpnetcdf.la -lmpi libtool: link: /usr/bin/x86_64-pld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z -Wl,relro -Wl,-z -Wl,combreloc -o .libs/ncmpidump ncmpidump.o vardata.o dumplib.o ../../../src/libs/.libs/libpnetcdf.so -L/usr/lib64 /usr/lib64/libmpifort.so /usr/lib64/libgfortran.so /usr/lib64/libquadmath.so /usr/lib64/libstdc++.so -lm /usr/lib64/libmpi.so -lopa -lrt -lpthread make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' Making all in ncmpidiff make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff' /usr/bin/gcc -I../../../src/utils/ncvalidator -o cdfdiff cdfdiff.c make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff' /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT ncmpidiff.o -MD -MP -MF .deps/ncmpidiff.Tpo -c -o ncmpidiff.o ncmpidiff.c mv -f .deps/ncmpidiff.Tpo .deps/ncmpidiff.Po make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff' make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff' /bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/x86_64-pld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o ncmpidiff ncmpidiff.o ../../../src/libs/libpnetcdf.la -lmpi libtool: link: /usr/bin/x86_64-pld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z -Wl,relro -Wl,-z -Wl,combreloc -o .libs/ncmpidiff ncmpidiff.o ../../../src/libs/.libs/libpnetcdf.so -L/usr/lib64 /usr/lib64/libmpifort.so /usr/lib64/libgfortran.so /usr/lib64/libquadmath.so /usr/lib64/libstdc++.so -lm /usr/lib64/libmpi.so -lopa -lrt -lpthread make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff' Making all in ncvalidator make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncvalidator' /usr/bin/gcc -o ncvalidator ncvalidator.c make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncvalidator' Making all in pnetcdf_version make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version' /usr/bin/gcc -DMPICC="\"/usr/bin/x86_64-pld-linux-gcc \"" -DCFLAGS="\"-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 \"" -DCONFIGURE_ARGS_CLEAN="\"LDFLAGS=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc CFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 CXXFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 FFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch FCFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch CPPFLAGS= CC=x86_64-pld-linux-gcc CXX=x86_64-pld-linux-g++ --host=x86_64-pld-linux --build=x86_64-pld-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --x-libraries=/usr/lib64 --enable-doxygen --disable-silent-rules --enable-shared\"" -DPNETCDF_VERSION="\"1.12.1\"" -DMPICXX="\"/usr/bin/x86_64-pld-linux-g++ \"" -DCXXFLAGS="\"-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 \"" -DMPIF77="\"/usr/bin/mpif77\"" -DFFLAGS="\"-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch\"" -DMPIF90="\"/usr/bin/mpif90\"" -DFCFLAGS="\"-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch\"" -o pnetcdf_version pnetcdf_version.c make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version' Making all in ncoffsets make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncoffsets' /usr/bin/gcc -o ncoffsets ncoffsets.c make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncoffsets' make[3]: Nothing to be done for 'all-am'. Making all in man make[1]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man' m4 -DPNETCDF -DPNETCDF_VERSION=1.12.1 pnetcdf_f90.m4 > pnetcdf_f90.3 || rm -f pnetcdf_f90.3 make[1]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man' make[1]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man' m4 -DPNETCDF -DAPI=F -DPNETCDF_VERSION=1.12.1 pnetcdf.m4 > pnetcdf_f77.3 || rm -f pnetcdf_f77.3 make[1]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man' make[1]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man' m4 -DPNETCDF -DAPI=C -DPNETCDF_VERSION=1.12.1 pnetcdf.m4 > pnetcdf.3 || rm -f pnetcdf.3 make[1]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man' Making all in examples Making all in C make[2]: Nothing to be done for 'all'. Making all in tutorial make[2]: Nothing to be done for 'all'. Making all in CXX make[2]: Nothing to be done for 'all'. Making all in F77 make[2]: Nothing to be done for 'all'. Making all in F90 make[2]: Nothing to be done for 'all'. make[2]: Nothing to be done for 'all-am'. Making all in benchmarks Making all in C make[2]: Nothing to be done for 'all'. Making all in FLASH-IO make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o flash_release.o flash_release.F90 f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o get_mfluid_property.o get_mfluid_property.F90 f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o flash_benchmark_io.o flash_benchmark_io.F90 f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran flash_benchmark_io.F90:228:23: 213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 228 | call MPI_Reduce(chk_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, & | 1 Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar) flash_benchmark_io.F90:231:23: 213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 231 | call MPI_Reduce(nocorner_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, & | 1 Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar) flash_benchmark_io.F90:234:23: 213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 234 | call MPI_Reduce(corner_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, & | 1 Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar) flash_benchmark_io.F90:295:26: 213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 295 | call MPI_Reduce(malloc_size, sum_size, 1, MPI_OFFSET, MPI_SUM, & | 1 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/REAL(8)). flash_benchmark_io.F90:71:21: 66 | call MPI_Bcast(isArgvRight, 1, MPI_LOGICAL, MasterPE, & | 2 ...... 71 | call MPI_Bcast(basenm, 128, MPI_CHARACTER, MasterPE, & | 1 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (CHARACTER(128)/LOGICAL(4)). flash_benchmark_io.F90:121:39: 114 | nocorner_io = plotfile_ncmpi_par(0, simtime, .false.) | 2 ...... 121 | corner_io = plotfile_ncmpi_par(0,0.e0,.true.) | 1 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o plotfile_ncmpi_parallel.o plotfile_ncmpi_parallel.F90 f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o checkpoint_ncmpi_parallel.o checkpoint_ncmpi_parallel.F90 f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' /bin/sh ../../libtool --tag=FC --mode=link /usr/bin/mpif90 -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -L../../src/libs -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o flash_benchmark_io get_mfluid_property.o flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -lpnetcdf -lmpi libtool: link: /usr/bin/mpif90 -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z -Wl,relro -Wl,-z -Wl,combreloc -o .libs/flash_benchmark_io get_mfluid_property.o flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -L../../src/libs /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/.libs/libpnetcdf.so -L/usr/lib64 /usr/lib64/libmpifort.so /usr/lib64/libgfortran.so /usr/lib64/libquadmath.so /usr/lib64/libstdc++.so -lm /usr/lib64/libmpi.so -lopa -lrt -lpthread make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Nothing to be done for 'all-am'. Making all in test Making all in common make[2]: Nothing to be done for 'all'. Making all in C make[2]: Nothing to be done for 'all'. Making all in fandc make[2]: Nothing to be done for 'all'. Making all in nc_test make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nc_test' m4 -DPNETCDF -I../../m4 tests.h.m4 > tests.h make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nc_test' /usr/bin/make all-am make[3]: Nothing to be done for 'all-am'. Making all in cdf_format make[2]: Nothing to be done for 'all'. Making all in header make[2]: Nothing to be done for 'all'. Making all in testcases make[2]: Nothing to be done for 'all'. Making all in nonblocking make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nonblocking' m4 -DPNETCDF -I../../m4 column_wise.m4 >column_wise.c make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nonblocking' make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nonblocking' m4 -DPNETCDF -I../../m4 bput_varn.m4 >bput_varn.c make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nonblocking' /usr/bin/make all-am make[3]: Nothing to be done for 'all-am'. Making all in CXX make[2]: Nothing to be done for 'all'. Making all in nf_test make[2]: Nothing to be done for 'all'. Making all in nf90_test make[2]: Nothing to be done for 'all'. Making all in F90 make[2]: Nothing to be done for 'all'. make[2]: Nothing to be done for 'all-am'. Making all in doc Making all in pnetcdf-api make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api' cd . ; /usr/bin/latex -output-directory=/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api pnetcdf-api.tex && /usr/bin/latex -output-directory=/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api pnetcdf-api.tex This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) %&-line parsing enabled. entering extended mode (/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.tex LaTeX2e <2005/12/01> Babel <v3.8l> and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, german-x-2008-06-18, ngerman-x-2008-06-18, ancientgreek, ibycus, ar abic, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danish, dutc h, esperanto, estonian, farsi, finnish, french, galician, german, ngerman, mono greek, greek, hungarian, icelandic, indonesian, interlingua, irish, italian, la tin, mongolian, mongolian2a, bokmal, nynorsk, polish, portuguese, romanian, rus sian, sanskrit, serbian, slovak, slovenian, spanish, swedish, turkish, ukenglis h, ukrainian, uppersorbian, welsh, loaded. (/usr/share/texmf-dist/tex/latex/base/article.cls Document Class: article 2005/09/16 v1.4f Standard LaTeX document class (/usr/share/texmf-dist/tex/latex/base/size10.clo)) No file pnetcdf-api.aux. LaTeX Warning: No \author given. [1] LaTeX Warning: Citation `thakur:romio' on page 2 undefined on input line 82. [2] [3] [4] [5] [6] Overfull \hbox (10.59515pt too wide) in paragraph at lines 422--424 []\OT1/cmr/m/n/10 See the ROMIO User's Guide for more in-for-ma-tion on the ag- gre-ga-tion hints, in par-tic-u-lar the \OT1/cmtt/m/n/10 cb[]config[]list (/usr/share/texmf-dist/tex/latex/base/omscmr.fd) [7] [8] (/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.bbl) (./c_api.tex Overfull \hbox (3.18495pt too wide) in paragraph at lines 26--26 []\OT1/cmtt/m/n/10 int ncmpi_create(MPI_Comm comm, const char *path, int cmode, MPI_Info info, int *ncidp);[] [9] [10] [11] (./data_mode_api.tex [12] [13] [14] [15] [16] [17] [18] [19] [20]) (./flexible_api.tex [21] [22]) (./multiple_io.tex [23] [24]) (./nonblocking.tex [25] [26] [27] [28] [29] [30] [31])) [32] [33] [34] (/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-ap i.dvi (34 pages, 88412 bytes). Transcript written on /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcd f-api.log. This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) %&-line parsing enabled. entering extended mode (/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.tex LaTeX2e <2005/12/01> Babel <v3.8l> and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, german-x-2008-06-18, ngerman-x-2008-06-18, ancientgreek, ibycus, ar abic, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danish, dutc h, esperanto, estonian, farsi, finnish, french, galician, german, ngerman, mono greek, greek, hungarian, icelandic, indonesian, interlingua, irish, italian, la tin, mongolian, mongolian2a, bokmal, nynorsk, polish, portuguese, romanian, rus sian, sanskrit, serbian, slovak, slovenian, spanish, swedish, turkish, ukenglis h, ukrainian, uppersorbian, welsh, loaded. (/usr/share/texmf-dist/tex/latex/base/article.cls Document Class: article 2005/09/16 v1.4f Standard LaTeX document class (/usr/share/texmf-dist/tex/latex/base/size10.clo)) (/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.aux) LaTeX Warning: No \author given. [1] [2] [3] [4] [5] [6] Overfull \hbox (10.59515pt too wide) in paragraph at lines 422--424 []\OT1/cmr/m/n/10 See the ROMIO User's Guide for more in-for-ma-tion on the ag- gre-ga-tion hints, in par-tic-u-lar the \OT1/cmtt/m/n/10 cb[]config[]list (/usr/share/texmf-dist/tex/latex/base/omscmr.fd) [7] [8] (/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.bbl) (./c_api.tex Overfull \hbox (3.18495pt too wide) in paragraph at lines 26--26 []\OT1/cmtt/m/n/10 int ncmpi_create(MPI_Comm comm, const char *path, int cmode, MPI_Info info, int *ncidp);[] [9] [10] [11] (./data_mode_api.tex [12] [13] [14] [15] [16] [17] [18] [19] [20]) (./flexible_api.tex [21] [22]) (./multiple_io.tex [23] [24]) (./nonblocking.tex [25] [26] [27] [28] [29] [30] [31])) [32] [33] [34] (/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.aux) ) (see the transcript file for additional information) Output written on /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-ap i.dvi (34 pages, 88408 bytes). Transcript written on /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcd f-api.log. /usr/bin/dvipdf pnetcdf-api.dvi pnetcdf-api.pdf make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api' make[2]: Nothing to be done for 'all-am'. make[1]: Nothing to be done for 'all-am'. + exit 0 Executing(%install): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.61929 TMP=/home/users/builder/tmp HOME=/home/users/builder PATH=/home/users/builder/GNUstep/Tools:/bin:/usr/bin:/usr/local/bin:/home/users/builder/bin TMPDIR=/tmp/B.RBzZGJ/BUILD/tmp + umask 022 + cd /tmp/B.RBzZGJ/BUILD + /bin/rm '--interactive=never' -rf /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder + /bin/mkdir -p /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder + cd pnetcdf-1.12.1 + rm -rf /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder + /usr/bin/make -Otarget -j9 install 'DESTDIR=/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder' Making install in src Making install in include make[3]: Nothing to be done for 'install-exec-am'. make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/include' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include' /usr/bin/install -c -m 644 pnetcdf.h '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include' make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/include' Making install in dispatchers /usr/bin/make install-am make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. Making install in drivers Making install in include /usr/bin/make install-am make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. Making install in common /usr/bin/make install-am make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. Making install in ncmpio /usr/bin/make install-am make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. Making install in binding Making install in cxx /usr/bin/make install-am make[5]: Nothing to be done for 'install-exec-am'. make[5]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/cxx' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include' /usr/bin/install -c -m 644 pnetcdf '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include' make[5]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/cxx' Making install in f77 make[4]: Nothing to be done for 'install-exec-am'. make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include' /usr/bin/install -c -m 644 pnetcdf.inc '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include' make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77' Making install in f90 /usr/bin/make install-am make[5]: Nothing to be done for 'install-exec-am'. make[5]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include' /usr/bin/install -c -m 644 pnetcdf.mod '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include' make[5]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. Making install in packaging make[3]: Nothing to be done for 'install-exec-am'. make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/packaging' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/pkgconfig' /usr/bin/install -c -m 644 pnetcdf.pc '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/pkgconfig' make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/packaging' /usr/bin/make install-data-hook make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/packaging' /bin/sed -i'' -e 's|INSTALL_PREFIX|/usr|g ; s|INSTALL_EXEC_PREFIX|/usr|g' /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/pkgconfig/pnetcdf.pc make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/packaging' Making install in . make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in libs make[3]: Nothing to be done for 'install-data-am'. make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64' /bin/sh ../../libtool --mode=install /usr/bin/install -c libpnetcdf.la '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64' libtool: install: /usr/bin/install -c .libs/libpnetcdf.so.4.0.1 /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.so.4.0.1 libtool: install: (cd /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64 && { ln -s -f libpnetcdf.so.4.0.1 libpnetcdf.so.4 || { rm -f libpnetcdf.so.4 && ln -s libpnetcdf.so.4.0.1 libpnetcdf.so.4; }; }) libtool: install: (cd /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64 && { ln -s -f libpnetcdf.so.4.0.1 libpnetcdf.so || { rm -f libpnetcdf.so && ln -s libpnetcdf.so.4.0.1 libpnetcdf.so; }; }) libtool: install: /usr/bin/install -c .libs/libpnetcdf.lai /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.la libtool: install: /usr/bin/install -c .libs/libpnetcdf.a /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.a libtool: install: chmod 644 /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.a libtool: install: ranlib /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.a libtool: warning: remember to run 'libtool --finish /usr/lib64' make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs' Making install in utils Making install in ncmpigen make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' /usr/bin/install -c -m 644 ncmpigen.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c ncmpigen '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncmpigen /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpigen make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpigen' Making install in ncmpidump make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' /usr/bin/install -c -m 644 ncmpidump.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c ncmpidump '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncmpidump /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpidump make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump' Making install in ncmpidiff make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' /usr/bin/install -c -m 644 ncmpidiff.1 cdfdiff.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff' make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c ncmpidiff cdfdiff '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -c .libs/ncmpidiff /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpidiff libtool: install: /usr/bin/install -c cdfdiff /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/cdfdiff make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff' Making install in ncvalidator make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncvalidator' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' /usr/bin/install -c -m 644 ncvalidator.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncvalidator' make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncvalidator' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c ncvalidator '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' libtool: install: /usr/bin/install -c ncvalidator /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncvalidator make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncvalidator' Making install in pnetcdf_version make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' /usr/bin/install -c -m 644 pnetcdf_version.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version' make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c pnetcdf_version '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' libtool: install: /usr/bin/install -c pnetcdf_version /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/pnetcdf_version make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version' Making install in ncoffsets make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncoffsets' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' /usr/bin/install -c -m 644 ncoffsets.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1' make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncoffsets' make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncoffsets' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c ncoffsets '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' libtool: install: /usr/bin/install -c ncoffsets /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncoffsets make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncoffsets' make[4]: Nothing to be done for 'install-data-am'. make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' /usr/bin/install -c pnetcdf-config '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin' make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils' /usr/bin/make install-exec-hook make[5]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils' /bin/sed -i'' -e 's|INSTALL_PREFIX|/usr|g ; s|INSTALL_EXEC_PREFIX|/usr|g' /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/pnetcdf-config chmod +x /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/pnetcdf-config make[5]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils' Making install in man make[2]: Nothing to be done for 'install-exec-am'. make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man' /bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man3' /usr/bin/install -c -m 644 pnetcdf.3 pnetcdf_f77.3 pnetcdf_f90.3 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man3' make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man' Making install in examples Making install in C make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in tutorial make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in CXX make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in F77 make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in F90 make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in benchmarks Making install in C make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in FLASH-IO make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in test Making install in common make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in C make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in fandc make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in nc_test /usr/bin/make install-am make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. Making install in cdf_format make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in header make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in testcases make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in nonblocking /usr/bin/make install-am make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. Making install in CXX make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in nf_test make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in nf90_test make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in F90 make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. Making install in doc Making install in pnetcdf-api make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/make install-data-hook make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1' +----------------------------------------------------------------------------+ | | PnetCDF has been successfully installed under | /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr | | * PnetCDF header files have been installed in | /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include | * PnetCDF library files have been installed in | /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib | * PnetCDF utility programs have been installed in | /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin | * PnetCDF man pages have been installed in | /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man | | To compile your PnetCDF programs, please add the following to the command | line, so the compiler can find the PnetCDF header files: | -I/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include | | Add the following line to link your program to PnetCDF library: | -L/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib -lpnetcdf | | Add the following to your run-time environment variable LD_LIBRARY_PATH, | when linking your executable with the PnetCDF shared libraries. | /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib | | | PnetCDF is jointly developed by a team at Northwestern University and | Argonne National Laboratory. | | Visit PnetCDF project web site for more information | https://parallel-netcdf.github.io | +----------------------------------------------------------------------------+ make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1' + /usr/lib/rpm/find-debuginfo.sh /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1 RPM_BUILD_DIR=/tmp/B.RBzZGJ/BUILD extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/cdfdiff extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpidiff extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpidump extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpigen extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncoffsets extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncvalidator extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/pnetcdf_version extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.so.4.0.1 symlinked /usr/lib/debug/usr/lib64/libpnetcdf.so.4.0.1.debug to /usr/lib/debug/usr/lib64/libpnetcdf.so.debug symlinked /usr/lib/debug/usr/lib64/libpnetcdf.so.4.0.1.debug to /usr/lib/debug/usr/lib64/libpnetcdf.so.4.debug cpio: /tmp/B.fDKtQa/BUILD/glibc-2.32/csu: Cannot stat: No such file or directory cpio: pnetcdf-1.12.1/src/utils/ncmpigen/lex.ncmpi.c: Cannot stat: No such file or directory cpio: pnetcdf-1.12.1/src/utils/ncmpigen/y.tab.c: Cannot stat: No such file or directory 16488 blocks + __spec_install_post_strip + set +x Stripping 7 ELF executables...DONE Stripping 1 ELF shared libraries...DONE Stripping 1 ar archives...DONE + __spec_install_post_chrpath + set +x Remove RPATH/RUNPATH from 8 executable binaries and shared object files. + __spec_install_post_compress_modules + set +x + __spec_install_post_check_so + set +x Searching for shared objects with unresolved symbols... DONE + __spec_install_post_check_tmpfiles + set +x Checking /var/run <-> tmpfiles.d completeness... DONE + __spec_install_post_check_shebangs + set +x Checking script shebangs... DONE + __spec_install_post_compress_docs + set +x Compress man pages: /usr/share/man + __spec_install_post_py_hardlink + set +x Processing files: parallel-netcdf-1.12.1-1.x86_64 Executing(%doc): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.16557 + umask 022 + cd /tmp/B.RBzZGJ/BUILD + cd pnetcdf-1.12.1 + DOCDIR=/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-1.12.1 + export DOCDIR + test -d /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-1.12.1 + /bin/mkdir -p /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-1.12.1 + cp -pr AUTHORS COPYRIGHT CREDITS README RELEASE_NOTES doc/README.LINUX doc/README.consistency doc/README.large_files /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-1.12.1 + /usr/lib/rpm/compress-doc Compressing documentation in /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-1.12.1... ./AUTHORS ./COPYRIGHT ./CREDITS ./README ./RELEASE_NOTES ./README.LINUX ./README.consistency ./README.large_files Documentation compressed. + exit 0 skipping /usr/share/doc/parallel-netcdf-1.12.1 requires detection Removing dependency on self: R libpnetcdf.so.4()(64bit) Provides: elf(buildid) = 1166263e9e86d547245ea341342fa53ce31092f9 elf(buildid) = 5dc0f83da28658699053a84918fb599bcadfea8f elf(buildid) = 80b313486474a9da94953595694d99c13986ad33 elf(buildid) = 9d2618aae28ff100191e02cc6630abeba511a291 elf(buildid) = a098a52e7ff6853d470b0d97c579265fedd4867a elf(buildid) = b8ca4b27545c6c48c2cdccf98270f5c87f9d240a elf(buildid) = cfb3dcf9665712557117bf11f453142ef2e3f6d5 elf(buildid) = e9a1564919deac8bf3b954490d299840e0e43747 libpnetcdf.so.4()(64bit) Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgfortran.so.5()(64bit) libgfortran.so.5(GFORTRAN_10)(64bit) libgfortran.so.5(GFORTRAN_8)(64bit) libmpi.so.12()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: parallel-netcdf-devel-1.12.1-1.x86_64 Provides: libtool(/usr/lib64/libpnetcdf.la) pkgconfig(pnetcdf) = 1.12.1 Requires(rpmlib): rpmlib(VersionedDependencies) <= 3.0.3-1 Requires: /bin/sh libtool(/usr/lib64/libgfortran.la) libtool(/usr/lib64/libmpi.la) libtool(/usr/lib64/libmpifort.la) libtool(/usr/lib64/libquadmath.la) libtool(/usr/lib64/libstdc++.la) Processing files: parallel-netcdf-static-1.12.1-1.x86_64 Processing files: parallel-netcdf-apidocs-1.12.1-1.noarch Executing(%doc): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.16557 + umask 022 + cd /tmp/B.RBzZGJ/BUILD + cd pnetcdf-1.12.1 + DOCDIR=/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-apidocs-1.12.1 + export DOCDIR + test -d /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-apidocs-1.12.1 + /bin/mkdir -p /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-apidocs-1.12.1 + cp -pr doc/pnetcdf-api/pnetcdf-api.pdf /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-apidocs-1.12.1 + /usr/lib/rpm/compress-doc Compressing documentation in /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-apidocs-1.12.1... Documentation compressed. + exit 0 skipping /usr/share/doc/parallel-netcdf-apidocs-1.12.1 requires detection skipping /usr/share/doc/parallel-netcdf-apidocs-1.12.1/pnetcdf-api.pdf requires detection Processing files: parallel-netcdf-debuginfo-1.12.1-1.x86_64 Checking for unpackaged file(s): /usr/lib/rpm/check-files /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder warning: Could not canonicalize hostname: ymir Wrote: /tmp/B.RBzZGJ/RPMS/parallel-netcdf-1.12.1-1.x86_64.rpm Wrote: /tmp/B.RBzZGJ/RPMS/parallel-netcdf-devel-1.12.1-1.x86_64.rpm Wrote: /tmp/B.RBzZGJ/RPMS/parallel-netcdf-static-1.12.1-1.x86_64.rpm Wrote: /tmp/B.RBzZGJ/RPMS/parallel-netcdf-apidocs-1.12.1-1.noarch.rpm Wrote: /tmp/B.RBzZGJ/RPMS/parallel-netcdf-debuginfo-1.12.1-1.x86_64.rpm Executing(%clean): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.17513 + umask 022 + cd /tmp/B.RBzZGJ/BUILD + cd pnetcdf-1.12.1 + /bin/rm '--interactive=never' -rf /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder + rm -rf /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder ended at: Sun Nov 22 21:48:32 2020, done in 0:09:12.542931 + chmod -R u+rwX /tmp/B.RBzZGJ/BUILD + rm -rf /tmp/B.RBzZGJ/tmp /tmp/B.RBzZGJ/BUILD test-build: not copying to /spools/ready Begin-PLD-Builder-Info not upgrading End-PLD-Builder-Info + rm -rf /tmp/B.RBzZGJ Begin-PLD-Builder-Info Build-Time: user:611.93s sys:28.45s real:566.49s (faults io:46457 non-io:7341755) Files queued for ftp: 3833300 parallel-netcdf-debuginfo-1.12.1-1.x86_64.rpm 133813 parallel-netcdf-apidocs-1.12.1-1.noarch.rpm 645229 parallel-netcdf-static-1.12.1-1.x86_64.rpm 207573 parallel-netcdf-devel-1.12.1-1.x86_64.rpm 843646 parallel-netcdf-1.12.1-1.x86_64.rpm End-PLD-Builder-Info
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