Powered by achelon. Your IP: 3.237.205.144 | parallel-netcdf 5170e7f2-7a88-4cc6-91ac-a162dd0f945fToc:- error 1
rpm: error: Failed build dependencies:
- error 2
rpm: error: Failed build dependencies:
- prep
Executing(%prep): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.93728
- build
Executing(%build): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.93728
- install
Executing(%install): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.61929
- files parallel-netcdf
Processing files: parallel-netcdf-1.12.1-1.x86_64
- doc
Executing(%doc): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.16557
- files parallel-netcdf-devel
Processing files: parallel-netcdf-devel-1.12.1-1.x86_64
- files parallel-netcdf-static
Processing files: parallel-netcdf-static-1.12.1-1.x86_64
- files parallel-netcdf-apidocs
Processing files: parallel-netcdf-apidocs-1.12.1-1.noarch
- doc
Executing(%doc): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.16557
- files parallel-netcdf-debuginfo
Processing files: parallel-netcdf-debuginfo-1.12.1-1.x86_64
- clean
Executing(%clean): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.17513
Content:request from: qboosh
checking if we should skip the build
started at: Sun Nov 22 21:39:07 2020
killing old processes on a builder
sending signal 9 to pid -1
Killed
cleaning up /tmp
fetching https://srcbuilder.pld-linux.org/th//srpms/5170e7f2-7a88-4cc6-91ac-a162dd0f945f/parallel-netcdf-1.12.1-1.src.rpm
fetched 2332220 bytes, 3017.2 K/s
installing srpm: parallel-netcdf-1.12.1-1.src.rpm
+ install -d /tmp/B.RBzZGJ/BUILD /tmp/B.RBzZGJ/RPMS
+ LC_ALL=en_US.UTF-8
+ rpm -qp --changelog parallel-netcdf-1.12.1-1.src.rpm
* Sun Nov 22 2020 PLD Linux Team <feedback@pld-linux.org>
- For complete changelog see: http://git.pld-linux.org/?p=packages/parallel-netcdf.git;a=log;h=master
* Sun Nov 22 2020 Jakub Bogusz <qboosh@pld-linux.org> 1b83130
- use -fallow-argument-mismatch for gfortran 10+
* Wed Nov 11 2020 Jakub Bogusz <qboosh@pld-linux.org> bf13cf4
- updated to 1.12.1
* Sun Dec 08 2019 Jakub Bogusz <qboosh@pld-linux.org> 371cf8f
- updated to 1.12.0
- updated sh patch
+ rpm -Uhv --nodeps --define '_topdir /tmp/B.RBzZGJ' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' parallel-netcdf-1.12.1-1.src.rpm
Preparing... ##################################################
parallel-netcdf ##################################################
+ rm -f parallel-netcdf-1.12.1-1.src.rpm
+ install -m 700 -d /tmp/B.RBzZGJ/BUILD/tmp
+ TMPDIR=/tmp/B.RBzZGJ/BUILD/tmp
+ exec nice -n 0 rpmbuild -bp --short-circuit --nodeps --define '_topdir /tmp/B.RBzZGJ' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x86_64-pld-linux --define 'prep exit 0' /tmp/B.RBzZGJ/parallel-netcdf.spec
Building target platforms: x86_64-pld-linux
checking BuildConflict-ing packages
no BuildConflicts found
checking BR
rpm: error: Failed build dependencies:
rpm: mpich-fortran-devel is needed by parallel-netcdf-1.12.1-1.src
rpm: Building target platforms: x86_64-pld-linux
updating poldek cache...
ready is up to date
th is up to date
th is up to date
th-ready is up to date
th-ready is up to date
th-test is up to date
th-test is up to date
checking conflicting packages in BRed packages
poldek: Loading [pndir]ready...
poldek: Loading [pndir]th-test...
poldek: Loading [pndir]th-test...
poldek: Loading [pndir]th-ready...
poldek: Loading [pndir]th-ready...
poldek: Loading [pndir]th...
poldek: Loading [pndir]th...
poldek: 30780 packages read
poldek: Removed 2069 duplicate packages from available set
poldek: Processing dependencies...
poldek: mpich-fortran-devel-3.1.4-1.x86_64 marks mpich-fortran-3.1.4-1.x86_64 (cap mpich-fortran = 3.1.4-1)
poldek: There are 2 packages to install (1 marked by dependencies):
poldek: A mpich-fortran-3.1.4-1.x86_64 mpich-fortran-devel-3.1.4-1.x86_64
poldek: This operation will use 719.2KB of disk space.
poldek: Need to get 283.7KB of archives.
poldek: Executing pm-command.sh --upgrade -vh --test --root / --define _check_dirname_deps 1...
poldek: Preparing... ##################################################
no conflicts found
checking BR
rpm: error: Failed build dependencies:
rpm: mpich-fortran-devel is needed by parallel-netcdf-1.12.1-1.src
rpm: Building target platforms: x86_64-pld-linux
installing BR: mpich\-fortran\-devel
+ poldek --noask --caplookup -Q -v '--ignore=hhvm-*' '--ignore=php4-*' '--ignore=php52-*' '--ignore=php54-*' '--ignore=php55-*' '--ignore=php56-*' '--ignore=php70-*' '--ignore=php71-*' '--ignore=php72-*' '--ignore=php73-*' '--ignore=php74-*' '--ignore=php80-*' --upgrade mpich-fortran-devel
Loading [pndir]ready...
Loading [pndir]th-test...
Loading [pndir]th-test...
Loading [pndir]th-ready...
Loading [pndir]th-ready...
Loading [pndir]th...
Loading [pndir]th...
30780 packages read
Removed 2069 duplicate packages from available set
Processing dependencies...
mpich-fortran-devel-3.1.4-1.x86_64 marks mpich-fortran-3.1.4-1.x86_64 (cap mpich-fortran = 3.1.4-1)
There are 2 packages to install (1 marked by dependencies):
A mpich-fortran-3.1.4-1.x86_64 mpich-fortran-devel-3.1.4-1.x86_64
This operation will use 719.2KB of disk space.
Need to get 283.7KB of archives.
Executing pm-command.sh --upgrade -vh --root / --define _check_dirname_deps 1...
Preparing... ##################################################
mpich-fortran ##################################################
mpich-fortran-devel ##################################################
building RPM using: set -ex; : build-id: 5170e7f2-7a88-4cc6-91ac-a162dd0f945f; TMPDIR=/tmp/B.RBzZGJ/BUILD/tmp exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.RBzZGJ' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x86_64-pld-linux /tmp/B.RBzZGJ/parallel-netcdf.spec
+ : build-id: 5170e7f2-7a88-4cc6-91ac-a162dd0f945f
+ TMPDIR=/tmp/B.RBzZGJ/BUILD/tmp
+ exec nice -n 0 rpmbuild -bb --define '_smp_mflags -j9' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.RBzZGJ' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x86_64-pld-linux /tmp/B.RBzZGJ/parallel-netcdf.spec
Building target platforms: x86_64-pld-linux
Executing(%prep): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.93728
+ umask 022
+ cd /tmp/B.RBzZGJ/BUILD
+ cd /tmp/B.RBzZGJ/BUILD
+ rm -rf pnetcdf-1.12.1
+ /bin/gzip -dc /tmp/B.RBzZGJ/pnetcdf-1.12.1.tar.gz
+ /bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pnetcdf-1.12.1
+ /bin/id -u
+ '[' 1000 '=' 0 ']'
+ /bin/id -u
+ '[' 1000 '=' 0 ']'
+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (parallel-netcdf-sh.patch):'
Patch #0 (parallel-netcdf-sh.patch):
+ '[' -f /tmp/B.RBzZGJ/parallel-netcdf-sh.patch ']'
+ /bin/cat /tmp/B.RBzZGJ/parallel-netcdf-sh.patch
+ /usr/bin/patch -s -p1
+ exit 0
Executing(%build): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.93728
TMP=/home/users/builder/tmp
HOME=/home/users/builder
PATH=/home/users/builder/GNUstep/Tools:/bin:/usr/bin:/usr/local/bin:/home/users/builder/bin
TMPDIR=/tmp/B.RBzZGJ/BUILD/tmp
+ umask 022
+ cd /tmp/B.RBzZGJ/BUILD
+ cd pnetcdf-1.12.1
+ libtoolize --copy --force --install
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, './scripts'.
libtoolize: copying file './scripts/config.guess'
libtoolize: copying file './scripts/config.sub'
libtoolize: copying file './scripts/install-sh'
libtoolize: copying file './scripts/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
+ aclocal -I m4
fatal: not a git repository (or any of the parent directories): .git
fatal: not a git repository (or any of the parent directories): .git
+ autoconf
fatal: not a git repository (or any of the parent directories): .git
+ autoheader
+ automake -a -c -f --foreign
fatal: not a git repository (or any of the parent directories): .git
configure.ac:307: installing './scripts/compile'
configure.ac:44: installing './scripts/missing'
benchmarks/C/Makefile.am: installing './scripts/depcomp'
+ FFLAGS='-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch'
+ FCFLAGS='-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch'
+ ./configure 'LDFLAGS=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' 'CFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 ' 'CXXFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 ' 'FFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch' 'FCFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch' 'CPPFLAGS=' 'CC=x86_64-pld-linux-gcc' 'CXX=x86_64-pld-linux-g++' '--host=x86_64-pld-linux' '--build=x86_64-pld-linux' '--prefix=/usr' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' '--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' '--libdir=/usr/lib64' '--libexecdir=/usr/libexec' '--localstatedir=/var' '--sharedstatedir=/var/lib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--x-libraries=/usr/lib64' --enable-doxygen --disable-silent-rules --enable-shared
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for rm... yes
checking for mawk... (cached) mawk
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for a sed that does not truncate output... /bin/sed
checking for sed handling option -i ... /bin/sed -i''
checking for x86_64-pld-linux-gcc... /usr/bin/x86_64-pld-linux-gcc
checking for x86_64-pld-linux-gcc... /usr/bin/x86_64-pld-linux-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /usr/bin/x86_64-pld-linux-gcc accepts -g... yes
checking for /usr/bin/x86_64-pld-linux-gcc option to accept ISO C89... none needed
checking whether /usr/bin/x86_64-pld-linux-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of /usr/bin/x86_64-pld-linux-gcc ... gcc3
checking how to run the C preprocessor... /usr/bin/x86_64-pld-linux-gcc -E
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for MPI_Comm_rank... no
checking for library containing MPI_Comm_rank... -lmpi
checking for MPI_File_open... yes
checking MPI C compiler base... GCC
checking MPI Standard version implemented... 3.0
checking whether MPICH_VERSION is declared... yes
checking whether MPICH2_VERSION is declared... no
checking whether OMPI_MAJOR_VERSION is declared... no
checking whether MVAPICH2_VERSION is declared... no
checking MPI vendor... MPICH 3.1.4
checking whether /usr/bin/x86_64-pld-linux-gcc is a wrapper of a C++ compiler... no
checking build system type... x86_64-pld-linux-gnu
checking host system type... x86_64-pld-linux-gnu
checking for x86_64-pld-linux-ar... no
checking for x86_64-pld-linux-lib... no
checking for x86_64-pld-linux-link... no
checking for ar... ar
checking the archiver (ar) interface... ar
checking how to print strings... print -r
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by /usr/bin/x86_64-pld-linux-gcc ... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pld-linux-gnu file names to x86_64-pld-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pld-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for x86_64-pld-linux-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pld-linux-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... print -r --
checking for x86_64-pld-linux-ar... ar
checking for archiver @FILE support... @
checking for x86_64-pld-linux-strip... no
checking for strip... strip
checking for x86_64-pld-linux-ranlib... no
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from /usr/bin/x86_64-pld-linux-gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64-pld-linux-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if /usr/bin/x86_64-pld-linux-gcc supports -fno-rtti -fno-exceptions... no
checking for /usr/bin/x86_64-pld-linux-gcc option to produce PIC... -fPIC -DPIC
checking if /usr/bin/x86_64-pld-linux-gcc PIC flag -fPIC -DPIC works... yes
checking if /usr/bin/x86_64-pld-linux-gcc static flag -static works... no
checking if /usr/bin/x86_64-pld-linux-gcc supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory
yes
checking if /usr/bin/x86_64-pld-linux-gcc supports -c -o file.o... (cached) yes
checking whether the /usr/bin/x86_64-pld-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... rm: cannot remove 'conftest*': No such file or directory
no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for x86_64-pld-linux-g++... /usr/bin/x86_64-pld-linux-g++
checking whether we are using the GNU C++ compiler... yes
checking whether /usr/bin/x86_64-pld-linux-g++ accepts -g... yes
checking dependency style of /usr/bin/x86_64-pld-linux-g++ ... gcc3
checking how to run the C++ preprocessor... /usr/bin/x86_64-pld-linux-g++ -E
checking for ld used by /usr/bin/x86_64-pld-linux-g++ ... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the /usr/bin/x86_64-pld-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for /usr/bin/x86_64-pld-linux-g++ option to produce PIC... -fPIC -DPIC
checking if /usr/bin/x86_64-pld-linux-g++ PIC flag -fPIC -DPIC works... yes
checking if /usr/bin/x86_64-pld-linux-g++ static flag -static works... no
checking if /usr/bin/x86_64-pld-linux-g++ supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory
yes
checking if /usr/bin/x86_64-pld-linux-g++ supports -c -o file.o... (cached) yes
checking whether the /usr/bin/x86_64-pld-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for MPI_File_close... yes
checking whether MPI C++ compiler redefines SEEK_SET ... yes
checking for mpif77... /usr/bin/mpif77
checking for mpif90... /usr/bin/mpif90
checking for x86_64-pld-linux-g77... /usr/bin/mpif77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether /usr/bin/mpif77 accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for /usr/bin/mpif77 option to produce PIC... -fPIC
checking if /usr/bin/mpif77 PIC flag -fPIC works... yes
checking if /usr/bin/mpif77 static flag -static works... no
checking if /usr/bin/mpif77 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory
yes
checking if /usr/bin/mpif77 supports -c -o file.o... (cached) yes
checking whether the /usr/bin/mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking how to get verbose linking output from /usr/bin/mpif77... -v
checking for Fortran 77 libraries of /usr/bin/mpif77... -L/usr/lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../.. -lmpi -lmpifort -lgfortran -lm -lquadmath
checking whether /usr/bin/mpif77 is a valid MPI compiler... yes
checking for x86_64-pld-linux-gfortran... /usr/bin/mpif90
checking whether we are using the GNU Fortran compiler... yes
checking whether /usr/bin/mpif90 accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for /usr/bin/mpif90 option to produce PIC... -fPIC
checking if /usr/bin/mpif90 PIC flag -fPIC works... yes
checking if /usr/bin/mpif90 static flag -static works... no
checking if /usr/bin/mpif90 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory
yes
checking if /usr/bin/mpif90 supports -c -o file.o... (cached) yes
checking whether the /usr/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking how to get verbose linking output from /usr/bin/mpif90... -v
checking for Fortran libraries of /usr/bin/mpif90... -L/usr/lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../.. -lmpi -lmpifort -lgfortran -lm -lquadmath
checking whether mpi.mod is available... yes
checking whether /usr/bin/mpif90 is a valid MPI compiler... yes
checking for Fortran flag needed to accept free-form source... -ffree-form
checking for Fortran flag to compile preprocessed .F files... none
checking for Fortran flag to compile preprocessed .F90 files... none
checking for Fortran flag to compile preprocessed .F files... (cached) none
checking how to define symbols for preprocessed Fortran... -D
checking for Fortran flag to compile .f files... none
checking for Fortran flag to compile .F files... none
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .F90 files... none
checking for Fortran flag needed to accept fixed-form source... -ffixed-form
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for C-equivalent to Fortran routine "SUB_A"... sub_a_
checking if MPI Fortran 90 compiler is NAG Fortran... no
checking Fortran compiler treating constant modifier... 8
checking Fortran 90 module extension... mod
checking Fortran 90 module inclusion flag... -I
checking Fortran 90 module extension... (cached) mod
checking whether Fortran 90 compiler capitalizes .mod filenames... no
configure: creating ./config.lt
config.lt: creating libtool
rm: cannot remove 'libtoolT': No such file or directory
checking whether MPI library is built with shared library support... yes
checking for m4... m4
checking m4 additional flags... none needed
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for inline... inline
checking for IEEE floating point format... yes
checking whether strdup is declared... yes
checking for strdup... yes
checking whether strerror is declared... yes
checking for strerror... yes
checking whether access is declared... yes
checking for access... yes
checking whether unlink is declared... yes
checking for unlink... yes
checking whether strcasecmp is declared... yes
checking for strcasecmp... yes
checking search.h usability... yes
checking search.h presence... yes
checking for search.h... yes
checking whether tsearch is declared... yes
checking for tsearch... yes
checking whether tdelete is declared... yes
checking for tdelete... yes
checking size of MPI_Offset... 8
checking size of MPI_Aint... 8
checking whether MPI_COMBINER_HVECTOR_INTEGER is defined... yes
checking whether MPI_COMBINER_HINDEXED_INTEGER is defined... yes
checking whether MPI_COMBINER_STRUCT_INTEGER is defined... yes
checking whether char is unsigned... no
checking whether byte ordering is bigendian... no
checking for size_t... yes
checking for off_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking for schar... no
checking for uchar... no
checking for ushort... yes
checking for uint... yes
checking for longlong... no
checking for ulonglong... no
checking for int64... no
checking for uint64... no
checking size of size_t... 8
checking size of off_t... 8
checking size of char... 1
checking size of signed char... 1
checking size of unsigned char... 1
checking size of short... 2
checking size of unsigned short int... 2
checking size of unsigned short... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 8
checking size of float... 4
checking size of double... 8
checking size of long long... 8
checking size of unsigned long long... 8
checking size of ptrdiff_t... 8
checking size of ushort... 2
checking size of uint... 4
checking size of MPI_Fint... 4
checking for /usr/bin/nm... /usr/bin/nm -B
checking nm flags...
checking for C-equivalent to Fortran routine "SUB"... sub_
checking for Fortran "integer*1"... yes
checking for Fortran "integer*2"... yes
checking for Fortran "integer*8"... yes
checking if Fortran "integer*1" is ... "signed char" in C
checking if Fortran "integer*2" is ... "short" in C
checking if Fortran "integer*8" is ... "int" in C
checking if Fortran "integer" is ... "int" in C
checking if Fortran "real" is ... "float" in C
checking if Fortran "doubleprecision" is ... "double" in C
checking for Fortran 77 GNU intrinsic INT... yes
checking for Fortran 77 intrinsic INT1... no
checking for Fortran 77 intrinsic INT2... yes
checking for Fortran 77 intrinsic INT8... yes
checking for gcov... gcov
checking if C++ macro __func__ or __FUNCTION__ is defined... yes
checking for latex... /usr/bin/latex
checking for dvipdf... /usr/bin/dvipdf
checking for mpiexec... /usr/bin/mpiexec
checking for gcc... /usr/bin/gcc
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checking that generated files are newer than configure... done
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------------------------------------------------------------------------------
PnetCDF Version 1.12.1
Features: Build static libraries - yes
Build shared libraries - yes
Build Fortran APIs - yes
Build C++ APIs - yes
Compilers: MPICC = /usr/bin/x86_64-pld-linux-gcc
MPICXX = /usr/bin/x86_64-pld-linux-g++
MPIF77 = /usr/bin/mpif77
MPIF90 = /usr/bin/mpif90
CFLAGS = -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2
CXXFLAGS = -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2
FFLAGS = -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch
FCFLAGS = -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch
LDFLAGS = -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc
LIBS = -lmpi
Now run 'make' to build the library and utility tools.
Then run 'make [<target>]' for testing and installation, where the
optional <target> can be:
tests - build all test programs (build only, no run)
check - run sequential test programs
ptest - run parallel test programs on 4 MPI processes
ptests - run parallel test programs on 3,4,6,8 MPI processes
install - install PnetCDF library in /usr
------------------------------------------------------------------------------
+ /usr/bin/make -Otarget -j9
Making all in src
Making all in include
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(CDPATH="${ZSH_VERSION+.}:" && cd ../.. && /bin/sh /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/scripts/missing autoheader)
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libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT ncmpio_i_varn.lo -MD -MP -MF .deps/ncmpio_i_varn.Tpo -c ncmpio_i_varn.c -o ncmpio_i_varn.o >/dev/null 2>&1
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Making all in binding
Making all in cxx
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cat ./pnetcdf.in >pnetcdf
set -e; for i in ncmpi_notyet.h ncmpiCheck.h ncmpiType.h ncmpiAtt.h ncmpiEnumType.h ncmpiGroupAtt.h ncmpiGroup.h ncmpiByte.h ncmpiChar.h ncmpiCompoundType.h ncmpiDouble.h ncmpiFloat.h ncmpiInt.h ncmpiInt64.h ncmpiOpaqueType.h ncmpiShort.h ncmpiUbyte.h ncmpiUint.h ncmpiUint64.h ncmpiUshort.h ncmpiException.h ncmpiDim.h ncmpiFile.h ncmpiVarAtt.h ncmpiVar.h ncmpiVlenType.h; do ( \
/bin/sed -e '/#ifndef/d' -e '/#define/d' -e '/#endif/d' -e '/#include/d' ./$i >> pnetcdf ; \
) ; done
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/bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT xstrerrorf.lo -MD -MP -MF .deps/xstrerrorf.Tpo -c -o xstrerrorf.lo xstrerrorf.c
libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT xstrerrorf.lo -MD -MP -MF .deps/xstrerrorf.Tpo -c xstrerrorf.c -fPIC -DPIC -o .libs/xstrerrorf.o
libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT xstrerrorf.lo -MD -MP -MF .deps/xstrerrorf.Tpo -c xstrerrorf.c -o xstrerrorf.o >/dev/null 2>&1
mv -f .deps/xstrerrorf.Tpo .deps/xstrerrorf.Plo
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77'
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77'
/bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT allf.lo -MD -MP -MF .deps/allf.Tpo -c -o allf.lo allf.c
libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT allf.lo -MD -MP -MF .deps/allf.Tpo -c allf.c -fPIC -DPIC -o .libs/allf.o
libtool: compile: /usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT allf.lo -MD -MP -MF .deps/allf.Tpo -c allf.c -o allf.o >/dev/null 2>&1
mv -f .deps/allf.Tpo .deps/allf.Plo
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77'
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77'
/bin/sh ../../../libtool --tag=F77 --mode=link /usr/bin/mpif77 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o libf77.la strerrorf.lo strerrnof.lo inq_libversf.lo issyserrf.lo xstrerrorf.lo xstrerrnof.lo xinq_libversf.lo allf.lo -lmpi
libtool: link: ar cru .libs/libf77.a .libs/strerrorf.o .libs/strerrnof.o .libs/inq_libversf.o .libs/issyserrf.o .libs/xstrerrorf.o .libs/xstrerrnof.o .libs/xinq_libversf.o .libs/allf.o
libtool: link: ranlib .libs/libf77.a
libtool: link: ( cd ".libs" && rm -f "libf77.la" && ln -s "../libf77.la" "libf77.la" )
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f77'
Making all in f90
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
m4 -DPNETCDF -DINTENTV=INOUT getput_text.m4 >getput_text.fh
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
m4 -DPNETCDF -DINTENTV=INOUT getput_vard.m4 >getput_vard.fh
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
m4 -DPNETCDF -DINTENTV=INOUT getput_varn.m4 >getput_varn.fh
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
m4 -DPNETCDF -DINTENTV=INOUT getput_var.m4 >getput_var.fh
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
/usr/bin/make all-am
make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
/bin/sh ../../../libtool --tag=FC --mode=compile /usr/bin/mpif90 -I. -I. -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o pnetcdf.lo pnetcdf.f90
libtool: compile: /usr/bin/mpif90 -I. -I. -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c pnetcdf.f90 -fPIC -o .libs/pnetcdf.o
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
getput_vard.fh:1988:86:
1988 | nf90mpi_get_vard_7D_EightByteInt_all = nfmpi_get_vard_all(ncid, varid, filetype, buf, bufcount, buftype)
| 1
......
2324 | nf90mpi_get_vard_7D_text_all = nfmpi_get_vard_all(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)).
getput_vard.fh:1558:86:
1558 | nf90mpi_put_vard_7D_EightByteInt_all = nfmpi_put_vard_all(ncid, varid, filetype, buf, bufcount, buftype)
| 1
......
2253 | nf90mpi_put_vard_7D_text_all = nfmpi_put_vard_all(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)).
getput_vard.fh:1128:78:
1128 | nf90mpi_get_vard_7D_EightByteInt = nfmpi_get_vard(ncid, varid, filetype, buf, bufcount, buftype)
| 1
......
2178 | nf90mpi_get_vard_7D_text = nfmpi_get_vard(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)).
getput_vard.fh:698:78:
698 | nf90mpi_put_vard_7D_EightByteInt = nfmpi_put_vard(ncid, varid, filetype, buf, bufcount, buftype)
| 1
......
2107 | nf90mpi_put_vard_7D_text = nfmpi_put_vard(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)).
getput_var.fh:23249:84:
23249 | nfmpi_bput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req)
| 1
......
23782 | nfmpi_bput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:23257:79:
23257 | nfmpi_bput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req)
| 1
......
23790 | nfmpi_bput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:23265:66:
23265 | nfmpi_bput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req)
| 1
......
23798 | nfmpi_bput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:20047:84:
20047 | nfmpi_iget_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req)
| 1
......
20580 | nfmpi_iget_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:20055:79:
20055 | nfmpi_iget_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req)
| 1
......
20588 | nfmpi_iget_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:20063:66:
20063 | nfmpi_iget_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req)
| 1
......
20596 | nfmpi_iget_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:16845:84:
16845 | nfmpi_iput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req)
| 1
......
17378 | nfmpi_iput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:16853:79:
16853 | nfmpi_iput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req)
| 1
......
17386 | nfmpi_iput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:16861:66:
16861 | nfmpi_iput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req)
| 1
......
17394 | nfmpi_iput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:13645:87:
13645 | nfmpi_get_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype)
| 1
......
14171 | nfmpi_get_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:13653:82:
13653 | nfmpi_get_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype)
| 1
......
14179 | nfmpi_get_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:13661:69:
13661 | nfmpi_get_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype)
| 1
......
14187 | nfmpi_get_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:10486:87:
10486 | nfmpi_put_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype)
| 1
......
11012 | nfmpi_put_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:10494:82:
10494 | nfmpi_put_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype)
| 1
......
11020 | nfmpi_put_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:10502:69:
10502 | nfmpi_put_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype)
| 1
......
11028 | nfmpi_put_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:7326:83:
7326 | nfmpi_get_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype)
| 1
......
7852 | nfmpi_get_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:7334:78:
7334 | nfmpi_get_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype)
| 1
......
7860 | nfmpi_get_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:7342:65:
7342 | nfmpi_get_vara(ncid, varid, localStart, localCount, values, bufcount, buftype)
| 1
......
7868 | nfmpi_get_vara(ncid, varid, localStart, localCount, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:4166:83:
4166 | nfmpi_put_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype)
| 1
......
4692 | nfmpi_put_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:4174:78:
4174 | nfmpi_put_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype)
| 1
......
4700 | nfmpi_put_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:4182:65:
4182 | nfmpi_put_vara(ncid, varid, localStart, localCount, values, bufcount, buftype)
| 1
......
4708 | nfmpi_put_vara(ncid, varid, localStart, localCount, values, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:1513:50:
1513 | nfmpi_bput_var1(ncid, varid, localStart, buf, bufcount, buftype, req)
| 1
......
1550 | nfmpi_bput_var1(ncid, varid, localStart, buf, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:1286:50:
1286 | nfmpi_iget_var1(ncid, varid, localStart, buf, bufcount, buftype, req)
| 1
......
1323 | nfmpi_iget_var1(ncid, varid, localStart, buf, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:1059:50:
1059 | nfmpi_iput_var1(ncid, varid, localStart, buf, bufcount, buftype, req)
| 1
......
1096 | nfmpi_iput_var1(ncid, varid, localStart, buf, bufcount, buftype, req)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:832:53:
832 | nfmpi_get_var1_all(ncid, varid, localStart, buf, bufcount, buftype)
| 1
......
868 | nfmpi_get_var1_all(ncid, varid, localStart, buf, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:615:49:
615 | nfmpi_get_var1(ncid, varid, localStart, buf, bufcount, buftype)
| 1
......
651 | nfmpi_get_var1(ncid, varid, localStart, buf, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:398:53:
398 | nfmpi_put_var1_all(ncid, varid, localStart, buf, bufcount, buftype)
| 1
......
434 | nfmpi_put_var1_all(ncid, varid, localStart, buf, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
getput_var.fh:181:49:
181 | nfmpi_put_var1(ncid, varid, localStart, buf, bufcount, buftype)
| 1
......
217 | nfmpi_put_var1(ncid, varid, localStart, buf, bufcount, buftype)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)).
variables.fh:215:81:
215 | nf90mpi_inq_var_fill_FourByteReal = nfmpi_inq_var_fill(ncid, varid, no_fill, fill_value)
| 1
......
224 | nf90mpi_inq_var_fill_EightByteReal = nfmpi_inq_var_fill(ncid, varid, no_fill, fill_value)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)).
variables.fh:151:81:
151 | nf90mpi_def_var_fill_FourByteReal = nfmpi_def_var_fill(ncid, varid, no_fill, fill_value)
| 1
......
159 | nf90mpi_def_var_fill_EightByteReal = nfmpi_def_var_fill(ncid, varid, no_fill, fill_value)
| 2
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)).
libtool: compile: /usr/bin/mpif90 -I. -I. -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c pnetcdf.f90 -o pnetcdf.o >/dev/null 2>&1
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
/bin/sh ../../../libtool --tag=FC --mode=link /usr/bin/mpif90 -I. -I. -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o libf90.la pnetcdf.lo -lmpi
libtool: warning: '/usr/lib64/../lib64/libquadmath.la' seems to be moved
libtool: link: ar cru .libs/libf90.a .libs/pnetcdf.o
libtool: link: ranlib .libs/libf90.a
libtool: link: ( cd ".libs" && rm -f "libf90.la" && ln -s "../libf90.la" "libf90.la" )
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/binding/f90'
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libtool: warning: '/usr/lib64/../lib64/libquadmath.la' seems to be moved
libtool: link: /usr/bin/x86_64-pld-linux-g++ -fPIC -DPIC -shared -nostdlib -O2 -gdwarf-4 -g2 -fstack-protector-strong -march=x86-64 -gdwarf-4 -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z -Wl,relro -Wl,-z -Wl,combreloc /usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-pld-linux/10.2.0/crtbeginS.o -Wl,--whole-archive ../dispatchers/.libs/libdispatchers.a ../drivers/common/.libs/libcommon.a ../drivers/ncmpio/.libs/libncmpio.a ../binding/cxx/.libs/libcxx.a ../binding/f77/.libs/libf77.a ../binding/f90/.libs/libf90.a -Wl,--no-whole-archive -L/usr/lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../.. /usr/lib64/libmpifort.so /usr/lib64/libgfortran.so -L/usr/lib64/../lib64 /usr/lib64/libquadmath.so /usr/lib64/libmpi.so -lopa -lrt -lpthread /usr/lib64/libstdc++.so -lm -lc -lgcc_s /usr/lib64/gcc/x86_64-pld-linux/10.2.0/crtendS.o /usr/lib64/gcc/x86_64-pld-linux/10.2.0/../../../../lib64/crtn.o -Wl,-soname -Wl,libpnetcdf.so.4 -o .libs/libpnetcdf.so.4.0.1
libtool: link: (cd ".libs" && rm -f "libpnetcdf.so.4" && ln -s "libpnetcdf.so.4.0.1" "libpnetcdf.so.4")
libtool: link: (cd ".libs" && rm -f "libpnetcdf.so" && ln -s "libpnetcdf.so.4.0.1" "libpnetcdf.so")
libtool: link: (cd .libs/libpnetcdf.lax/libdispatchers.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../dispatchers/.libs/libdispatchers.a")
libtool: link: (cd .libs/libpnetcdf.lax/libcommon.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../drivers/common/.libs/libcommon.a")
libtool: link: (cd .libs/libpnetcdf.lax/libncmpio.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../drivers/ncmpio/.libs/libncmpio.a")
libtool: link: (cd .libs/libpnetcdf.lax/libcxx.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../binding/cxx/.libs/libcxx.a")
libtool: link: (cd .libs/libpnetcdf.lax/libf77.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../binding/f77/.libs/libf77.a")
libtool: link: (cd .libs/libpnetcdf.lax/libf90.a && ar x "/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/../binding/f90/.libs/libf90.a")
libtool: link: ar cru .libs/libpnetcdf.a .libs/libpnetcdf.lax/libdispatchers.a/attr_getput.o .libs/libpnetcdf.lax/libdispatchers.a/attribute.o .libs/libpnetcdf.lax/libdispatchers.a/dimension.o .libs/libpnetcdf.lax/libdispatchers.a/error_codes.o .libs/libpnetcdf.lax/libdispatchers.a/file.o .libs/libpnetcdf.lax/libdispatchers.a/lib_version.o .libs/libpnetcdf.lax/libdispatchers.a/var_getput.o .libs/libpnetcdf.lax/libdispatchers.a/variable.o .libs/libpnetcdf.lax/libcommon.a/check_name.o .libs/libpnetcdf.lax/libcommon.a/convert_swap.o .libs/libpnetcdf.lax/libcommon.a/create_imaptype.o .libs/libpnetcdf.lax/libcommon.a/dtype_decode.o .libs/libpnetcdf.lax/libcommon.a/error_mpi2nc.o .libs/libpnetcdf.lax/libcommon.a/error_posix2nc.o .libs/libpnetcdf.lax/libcommon.a/hash_map.o .libs/libpnetcdf.lax/libcommon.a/mem_alloc.o .libs/libpnetcdf.lax/libcommon.a/ncx.o .libs/libpnetcdf.lax/libcommon.a/pack_unpack.o .libs/libpnetcdf.lax/libcommon.a/utf8proc.o .libs/libpnetcdf.lax/libcommon.a/utils.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_attr.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_bput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_close.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_create.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_dim.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_driver.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_enddef.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_file_io.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_file_misc.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_filetype.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_fill.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_getput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_hash_func.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_header_get.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_header_put.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_i_getput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_i_varn.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_open.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_sync.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_util.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_var.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_vard.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_varn.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_wait.o .libs/libpnetcdf.lax/libcxx.a/ncmpiAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiByte.o .libs/libpnetcdf.lax/libcxx.a/ncmpiChar.o .libs/libpnetcdf.lax/libcxx.a/ncmpiCheck.o .libs/libpnetcdf.lax/libcxx.a/ncmpiCompoundType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiDim.o .libs/libpnetcdf.lax/libcxx.a/ncmpiDouble.o .libs/libpnetcdf.lax/libcxx.a/ncmpiEnumType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiException.o .libs/libpnetcdf.lax/libcxx.a/ncmpiFile.o .libs/libpnetcdf.lax/libcxx.a/ncmpiFloat.o .libs/libpnetcdf.lax/libcxx.a/ncmpiGroup.o .libs/libpnetcdf.lax/libcxx.a/ncmpiGroupAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiInt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiInt64.o .libs/libpnetcdf.lax/libcxx.a/ncmpiOpaqueType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiShort.o .libs/libpnetcdf.lax/libcxx.a/ncmpiType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUbyte.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUint.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUint64.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUshort.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVar.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVarAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVlenType.o .libs/libpnetcdf.lax/libcxx.a/ncmpi_notyet.o .libs/libpnetcdf.lax/libf77.a/allf.o .libs/libpnetcdf.lax/libf77.a/inq_libversf.o .libs/libpnetcdf.lax/libf77.a/issyserrf.o .libs/libpnetcdf.lax/libf77.a/strerrnof.o .libs/libpnetcdf.lax/libf77.a/strerrorf.o .libs/libpnetcdf.lax/libf77.a/xinq_libversf.o .libs/libpnetcdf.lax/libf77.a/xstrerrnof.o .libs/libpnetcdf.lax/libf77.a/xstrerrorf.o .libs/libpnetcdf.lax/libf90.a/pnetcdf.o
libtool: link: ranlib .libs/libpnetcdf.a
libtool: link: rm -fr .libs/libpnetcdf.lax
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/usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT ncmpigentab.o -MD -MP -MF .deps/ncmpigentab.Tpo -c -o ncmpigentab.o ncmpigentab.c
In file included from /usr/include/string.h:519,
from ncmpigentab.c:6:
In function 'strncpy',
inlined from 'ncmpiparse' at ./ncmpigen.y:376:13:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
y.tab.c: In function 'ncmpiparse':
./ncmpigen.y:373:24: note: length computed here
373 | MPI_Offset len = strlen(termstring);
| ^~~~~~~~~~~~~~~~~~
mv -f .deps/ncmpigentab.Tpo .deps/ncmpigentab.Po
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/bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/x86_64-pld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o ncmpidump ncmpidump.o vardata.o dumplib.o ../../../src/libs/libpnetcdf.la -lmpi
libtool: link: /usr/bin/x86_64-pld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z -Wl,relro -Wl,-z -Wl,combreloc -o .libs/ncmpidump ncmpidump.o vardata.o dumplib.o ../../../src/libs/.libs/libpnetcdf.so -L/usr/lib64 /usr/lib64/libmpifort.so /usr/lib64/libgfortran.so /usr/lib64/libquadmath.so /usr/lib64/libstdc++.so -lm /usr/lib64/libmpi.so -lopa -lrt -lpthread
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump'
Making all in ncmpidiff
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff'
/usr/bin/gcc -I../../../src/utils/ncvalidator -o cdfdiff cdfdiff.c
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff'
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff'
/usr/bin/x86_64-pld-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -MT ncmpidiff.o -MD -MP -MF .deps/ncmpidiff.Tpo -c -o ncmpidiff.o ncmpidiff.c
mv -f .deps/ncmpidiff.Tpo .deps/ncmpidiff.Po
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff'
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff'
/bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/x86_64-pld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o ncmpidiff ncmpidiff.o ../../../src/libs/libpnetcdf.la -lmpi
libtool: link: /usr/bin/x86_64-pld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z -Wl,relro -Wl,-z -Wl,combreloc -o .libs/ncmpidiff ncmpidiff.o ../../../src/libs/.libs/libpnetcdf.so -L/usr/lib64 /usr/lib64/libmpifort.so /usr/lib64/libgfortran.so /usr/lib64/libquadmath.so /usr/lib64/libstdc++.so -lm /usr/lib64/libmpi.so -lopa -lrt -lpthread
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff'
Making all in ncvalidator
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncvalidator'
/usr/bin/gcc -o ncvalidator ncvalidator.c
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncvalidator'
Making all in pnetcdf_version
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version'
/usr/bin/gcc -DMPICC="\"/usr/bin/x86_64-pld-linux-gcc \"" -DCFLAGS="\"-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 \"" -DCONFIGURE_ARGS_CLEAN="\"LDFLAGS=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc CFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 CXXFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 FFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch FCFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch CPPFLAGS= CC=x86_64-pld-linux-gcc CXX=x86_64-pld-linux-g++ --host=x86_64-pld-linux --build=x86_64-pld-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --x-libraries=/usr/lib64 --enable-doxygen --disable-silent-rules --enable-shared\"" -DPNETCDF_VERSION="\"1.12.1\"" -DMPICXX="\"/usr/bin/x86_64-pld-linux-g++ \"" -DCXXFLAGS="\"-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 \"" -DMPIF77="\"/usr/bin/mpif77\"" -DFFLAGS="\"-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch\"" -DMPIF90="\"/usr/bin/mpif90\"" -DFCFLAGS="\"-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch\"" -o pnetcdf_version pnetcdf_version.c
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version'
Making all in ncoffsets
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncoffsets'
/usr/bin/gcc -o ncoffsets ncoffsets.c
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncoffsets'
make[3]: Nothing to be done for 'all-am'.
Making all in man
make[1]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man'
m4 -DPNETCDF -DPNETCDF_VERSION=1.12.1 pnetcdf_f90.m4 > pnetcdf_f90.3 || rm -f pnetcdf_f90.3
make[1]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man'
make[1]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man'
m4 -DPNETCDF -DAPI=F -DPNETCDF_VERSION=1.12.1 pnetcdf.m4 > pnetcdf_f77.3 || rm -f pnetcdf_f77.3
make[1]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man'
make[1]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man'
m4 -DPNETCDF -DAPI=C -DPNETCDF_VERSION=1.12.1 pnetcdf.m4 > pnetcdf.3 || rm -f pnetcdf.3
make[1]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man'
Making all in examples
Making all in C
make[2]: Nothing to be done for 'all'.
Making all in tutorial
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Making all in CXX
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Making all in F77
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Making all in F90
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make[2]: Nothing to be done for 'all-am'.
Making all in benchmarks
Making all in C
make[2]: Nothing to be done for 'all'.
Making all in FLASH-IO
make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
/usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o flash_release.o flash_release.F90
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
/usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o get_mfluid_property.o get_mfluid_property.F90
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
/usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o flash_benchmark_io.o flash_benchmark_io.F90
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
flash_benchmark_io.F90:228:23:
213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, &
| 2
......
228 | call MPI_Reduce(chk_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, &
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
flash_benchmark_io.F90:231:23:
213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, &
| 2
......
231 | call MPI_Reduce(nocorner_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, &
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
flash_benchmark_io.F90:234:23:
213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, &
| 2
......
234 | call MPI_Reduce(corner_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, &
| 1
Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar)
flash_benchmark_io.F90:295:26:
213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, &
| 2
......
295 | call MPI_Reduce(malloc_size, sum_size, 1, MPI_OFFSET, MPI_SUM, &
| 1
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/REAL(8)).
flash_benchmark_io.F90:71:21:
66 | call MPI_Bcast(isArgvRight, 1, MPI_LOGICAL, MasterPE, &
| 2
......
71 | call MPI_Bcast(basenm, 128, MPI_CHARACTER, MasterPE, &
| 1
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (CHARACTER(128)/LOGICAL(4)).
flash_benchmark_io.F90:121:39:
114 | nocorner_io = plotfile_ncmpi_par(0, simtime, .false.)
| 2
......
121 | corner_io = plotfile_ncmpi_par(0,0.e0,.true.)
| 1
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)).
make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
/usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o plotfile_ncmpi_parallel.o plotfile_ncmpi_parallel.F90
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
/usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -c -o checkpoint_ncmpi_parallel.o checkpoint_ncmpi_parallel.F90
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
/bin/sh ../../libtool --tag=FC --mode=link /usr/bin/mpif90 -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -L../../src/libs -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o flash_benchmark_io get_mfluid_property.o flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -lpnetcdf -lmpi
libtool: link: /usr/bin/mpif90 -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -fallow-argument-mismatch -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z -Wl,relro -Wl,-z -Wl,combreloc -o .libs/flash_benchmark_io get_mfluid_property.o flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -L../../src/libs /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs/.libs/libpnetcdf.so -L/usr/lib64 /usr/lib64/libmpifort.so /usr/lib64/libgfortran.so /usr/lib64/libquadmath.so /usr/lib64/libstdc++.so -lm /usr/lib64/libmpi.so -lopa -lrt -lpthread
make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/benchmarks/FLASH-IO'
make[2]: Nothing to be done for 'all-am'.
Making all in test
Making all in common
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Making all in C
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Making all in fandc
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Making all in nc_test
make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nc_test'
m4 -DPNETCDF -I../../m4 tests.h.m4 > tests.h
make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nc_test'
/usr/bin/make all-am
make[3]: Nothing to be done for 'all-am'.
Making all in cdf_format
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Making all in header
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Making all in testcases
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Making all in nonblocking
make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nonblocking'
m4 -DPNETCDF -I../../m4 column_wise.m4 >column_wise.c
make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nonblocking'
make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nonblocking'
m4 -DPNETCDF -I../../m4 bput_varn.m4 >bput_varn.c
make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/test/nonblocking'
/usr/bin/make all-am
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Making all in CXX
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Making all in nf_test
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Making all in nf90_test
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Making all in F90
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Making all in doc
Making all in pnetcdf-api
make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api'
cd . ; /usr/bin/latex -output-directory=/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api pnetcdf-api.tex && /usr/bin/latex -output-directory=/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api pnetcdf-api.tex
This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7)
%&-line parsing enabled.
entering extended mode
(/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.tex
LaTeX2e <2005/12/01>
Babel <v3.8l> and hyphenation patterns for english, usenglishmax, dumylang, noh
yphenation, german-x-2008-06-18, ngerman-x-2008-06-18, ancientgreek, ibycus, ar
abic, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danish, dutc
h, esperanto, estonian, farsi, finnish, french, galician, german, ngerman, mono
greek, greek, hungarian, icelandic, indonesian, interlingua, irish, italian, la
tin, mongolian, mongolian2a, bokmal, nynorsk, polish, portuguese, romanian, rus
sian, sanskrit, serbian, slovak, slovenian, spanish, swedish, turkish, ukenglis
h, ukrainian, uppersorbian, welsh, loaded.
(/usr/share/texmf-dist/tex/latex/base/article.cls
Document Class: article 2005/09/16 v1.4f Standard LaTeX document class
(/usr/share/texmf-dist/tex/latex/base/size10.clo))
No file pnetcdf-api.aux.
LaTeX Warning: No \author given.
[1]
LaTeX Warning: Citation `thakur:romio' on page 2 undefined on input line 82.
[2] [3] [4] [5] [6]
Overfull \hbox (10.59515pt too wide) in paragraph at lines 422--424
[]\OT1/cmr/m/n/10 See the ROMIO User's Guide for more in-for-ma-tion on the ag-
gre-ga-tion hints, in par-tic-u-lar the \OT1/cmtt/m/n/10 cb[]config[]list
(/usr/share/texmf-dist/tex/latex/base/omscmr.fd) [7] [8]
(/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.bbl)
(./c_api.tex
Overfull \hbox (3.18495pt too wide) in paragraph at lines 26--26
[]\OT1/cmtt/m/n/10 int ncmpi_create(MPI_Comm comm, const char *path, int cmode,
MPI_Info info, int *ncidp);[]
[9] [10] [11] (./data_mode_api.tex [12] [13] [14] [15] [16] [17] [18] [19]
[20]) (./flexible_api.tex [21] [22]) (./multiple_io.tex [23] [24])
(./nonblocking.tex [25] [26] [27] [28] [29] [30] [31])) [32] [33] [34]
(/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.aux)
LaTeX Warning: There were undefined references.
LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
)
(see the transcript file for additional information)
Output written on /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-ap
i.dvi (34 pages, 88412 bytes).
Transcript written on /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcd
f-api.log.
This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7)
%&-line parsing enabled.
entering extended mode
(/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.tex
LaTeX2e <2005/12/01>
Babel <v3.8l> and hyphenation patterns for english, usenglishmax, dumylang, noh
yphenation, german-x-2008-06-18, ngerman-x-2008-06-18, ancientgreek, ibycus, ar
abic, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danish, dutc
h, esperanto, estonian, farsi, finnish, french, galician, german, ngerman, mono
greek, greek, hungarian, icelandic, indonesian, interlingua, irish, italian, la
tin, mongolian, mongolian2a, bokmal, nynorsk, polish, portuguese, romanian, rus
sian, sanskrit, serbian, slovak, slovenian, spanish, swedish, turkish, ukenglis
h, ukrainian, uppersorbian, welsh, loaded.
(/usr/share/texmf-dist/tex/latex/base/article.cls
Document Class: article 2005/09/16 v1.4f Standard LaTeX document class
(/usr/share/texmf-dist/tex/latex/base/size10.clo))
(/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.aux)
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[1] [2] [3] [4] [5] [6]
Overfull \hbox (10.59515pt too wide) in paragraph at lines 422--424
[]\OT1/cmr/m/n/10 See the ROMIO User's Guide for more in-for-ma-tion on the ag-
gre-ga-tion hints, in par-tic-u-lar the \OT1/cmtt/m/n/10 cb[]config[]list
(/usr/share/texmf-dist/tex/latex/base/omscmr.fd) [7] [8]
(/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.bbl)
(./c_api.tex
Overfull \hbox (3.18495pt too wide) in paragraph at lines 26--26
[]\OT1/cmtt/m/n/10 int ncmpi_create(MPI_Comm comm, const char *path, int cmode,
MPI_Info info, int *ncidp);[]
[9] [10] [11] (./data_mode_api.tex [12] [13] [14] [15] [16] [17] [18] [19]
[20]) (./flexible_api.tex [21] [22]) (./multiple_io.tex [23] [24])
(./nonblocking.tex [25] [26] [27] [28] [29] [30] [31])) [32] [33] [34]
(/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-api.aux) )
(see the transcript file for additional information)
Output written on /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcdf-ap
i.dvi (34 pages, 88408 bytes).
Transcript written on /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/doc/pnetcdf-api/pnetcd
f-api.log.
/usr/bin/dvipdf pnetcdf-api.dvi pnetcdf-api.pdf
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+ exit 0
Executing(%install): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.61929
TMP=/home/users/builder/tmp
HOME=/home/users/builder
PATH=/home/users/builder/GNUstep/Tools:/bin:/usr/bin:/usr/local/bin:/home/users/builder/bin
TMPDIR=/tmp/B.RBzZGJ/BUILD/tmp
+ umask 022
+ cd /tmp/B.RBzZGJ/BUILD
+ /bin/rm '--interactive=never' -rf /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder
+ /bin/mkdir -p /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder
+ cd pnetcdf-1.12.1
+ rm -rf /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder
+ /usr/bin/make -Otarget -j9 install 'DESTDIR=/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder'
Making install in src
Making install in include
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Making install in binding
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Making install in f77
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Making install in f90
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Making install in packaging
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Making install in .
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Making install in libs
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/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64'
/bin/sh ../../libtool --mode=install /usr/bin/install -c libpnetcdf.la '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64'
libtool: install: /usr/bin/install -c .libs/libpnetcdf.so.4.0.1 /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.so.4.0.1
libtool: install: (cd /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64 && { ln -s -f libpnetcdf.so.4.0.1 libpnetcdf.so.4 || { rm -f libpnetcdf.so.4 && ln -s libpnetcdf.so.4.0.1 libpnetcdf.so.4; }; })
libtool: install: (cd /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64 && { ln -s -f libpnetcdf.so.4.0.1 libpnetcdf.so || { rm -f libpnetcdf.so && ln -s libpnetcdf.so.4.0.1 libpnetcdf.so; }; })
libtool: install: /usr/bin/install -c .libs/libpnetcdf.lai /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.la
libtool: install: /usr/bin/install -c .libs/libpnetcdf.a /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.a
libtool: install: chmod 644 /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.a
libtool: install: ranlib /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.a
libtool: warning: remember to run 'libtool --finish /usr/lib64'
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/libs'
Making install in utils
Making install in ncmpigen
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/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
/usr/bin/install -c -m 644 ncmpigen.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
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/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
/bin/sh ../../../libtool --mode=install /usr/bin/install -c ncmpigen '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -c .libs/ncmpigen /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpigen
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Making install in ncmpidump
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/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
/usr/bin/install -c -m 644 ncmpidump.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump'
make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidump'
/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
/bin/sh ../../../libtool --mode=install /usr/bin/install -c ncmpidump '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -c .libs/ncmpidump /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpidump
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Making install in ncmpidiff
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/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
/usr/bin/install -c -m 644 ncmpidiff.1 cdfdiff.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff'
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/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
/bin/sh ../../../libtool --mode=install /usr/bin/install -c ncmpidiff cdfdiff '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64'
libtool: install: /usr/bin/install -c .libs/ncmpidiff /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpidiff
libtool: install: /usr/bin/install -c cdfdiff /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/cdfdiff
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncmpidiff'
Making install in ncvalidator
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/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
/usr/bin/install -c -m 644 ncvalidator.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncvalidator'
make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncvalidator'
/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
/bin/sh ../../../libtool --mode=install /usr/bin/install -c ncvalidator '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
libtool: install: /usr/bin/install -c ncvalidator /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncvalidator
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncvalidator'
Making install in pnetcdf_version
make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version'
/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
/usr/bin/install -c -m 644 pnetcdf_version.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version'
make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version'
/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
/bin/sh ../../../libtool --mode=install /usr/bin/install -c pnetcdf_version '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
libtool: install: /usr/bin/install -c pnetcdf_version /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/pnetcdf_version
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/pnetcdf_version'
Making install in ncoffsets
make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncoffsets'
/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
/usr/bin/install -c -m 644 ncoffsets.1 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man1'
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncoffsets'
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/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
/bin/sh ../../../libtool --mode=install /usr/bin/install -c ncoffsets '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
libtool: install: /usr/bin/install -c ncoffsets /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncoffsets
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils/ncoffsets'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils'
/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
/usr/bin/install -c pnetcdf-config '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin'
make[4]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils'
/usr/bin/make install-exec-hook
make[5]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils'
/bin/sed -i'' -e 's|INSTALL_PREFIX|/usr|g ; s|INSTALL_EXEC_PREFIX|/usr|g' /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/pnetcdf-config
chmod +x /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/pnetcdf-config
make[5]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/src/utils'
Making install in man
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man'
/bin/mkdir -p '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man3'
/usr/bin/install -c -m 644 pnetcdf.3 pnetcdf_f77.3 pnetcdf_f90.3 '/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man/man3'
make[2]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1/man'
Making install in examples
Making install in C
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in tutorial
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in CXX
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in F77
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in F90
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in benchmarks
Making install in C
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in FLASH-IO
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in test
Making install in common
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in C
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in fandc
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in nc_test
/usr/bin/make install-am
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
Making install in cdf_format
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in header
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in testcases
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in nonblocking
/usr/bin/make install-am
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
Making install in CXX
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in nf_test
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in nf90_test
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in F90
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
Making install in doc
Making install in pnetcdf-api
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[2]: Nothing to be done for 'install-exec-am'.
/usr/bin/make install-data-hook
make[3]: Entering directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1'
+----------------------------------------------------------------------------+
|
| PnetCDF has been successfully installed under
| /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr
|
| * PnetCDF header files have been installed in
| /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include
| * PnetCDF library files have been installed in
| /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib
| * PnetCDF utility programs have been installed in
| /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin
| * PnetCDF man pages have been installed in
| /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/man
|
| To compile your PnetCDF programs, please add the following to the command
| line, so the compiler can find the PnetCDF header files:
| -I/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/include
|
| Add the following line to link your program to PnetCDF library:
| -L/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib -lpnetcdf
|
| Add the following to your run-time environment variable LD_LIBRARY_PATH,
| when linking your executable with the PnetCDF shared libraries.
| /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib
|
|
| PnetCDF is jointly developed by a team at Northwestern University and
| Argonne National Laboratory.
|
| Visit PnetCDF project web site for more information
| https://parallel-netcdf.github.io
|
+----------------------------------------------------------------------------+
make[3]: Leaving directory '/tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1'
+ /usr/lib/rpm/find-debuginfo.sh /tmp/B.RBzZGJ/BUILD/pnetcdf-1.12.1
RPM_BUILD_DIR=/tmp/B.RBzZGJ/BUILD
extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/cdfdiff
extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpidiff
extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpidump
extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncmpigen
extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncoffsets
extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/ncvalidator
extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/bin/pnetcdf_version
extracting debug info from /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/lib64/libpnetcdf.so.4.0.1
symlinked /usr/lib/debug/usr/lib64/libpnetcdf.so.4.0.1.debug to /usr/lib/debug/usr/lib64/libpnetcdf.so.debug
symlinked /usr/lib/debug/usr/lib64/libpnetcdf.so.4.0.1.debug to /usr/lib/debug/usr/lib64/libpnetcdf.so.4.debug
cpio: /tmp/B.fDKtQa/BUILD/glibc-2.32/csu: Cannot stat: No such file or directory
cpio: pnetcdf-1.12.1/src/utils/ncmpigen/lex.ncmpi.c: Cannot stat: No such file or directory
cpio: pnetcdf-1.12.1/src/utils/ncmpigen/y.tab.c: Cannot stat: No such file or directory
16488 blocks
+ __spec_install_post_strip
+ set +x
Stripping 7 ELF executables...DONE
Stripping 1 ELF shared libraries...DONE
Stripping 1 ar archives...DONE
+ __spec_install_post_chrpath
+ set +x
Remove RPATH/RUNPATH from 8 executable binaries and shared object files.
+ __spec_install_post_compress_modules
+ set +x
+ __spec_install_post_check_so
+ set +x
Searching for shared objects with unresolved symbols... DONE
+ __spec_install_post_check_tmpfiles
+ set +x
Checking /var/run <-> tmpfiles.d completeness...
DONE
+ __spec_install_post_check_shebangs
+ set +x
Checking script shebangs...
DONE
+ __spec_install_post_compress_docs
+ set +x
Compress man pages: /usr/share/man
+ __spec_install_post_py_hardlink
+ set +x
Processing files: parallel-netcdf-1.12.1-1.x86_64
Executing(%doc): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.16557
+ umask 022
+ cd /tmp/B.RBzZGJ/BUILD
+ cd pnetcdf-1.12.1
+ DOCDIR=/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-1.12.1
+ export DOCDIR
+ test -d /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-1.12.1
+ /bin/mkdir -p /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-1.12.1
+ cp -pr AUTHORS COPYRIGHT CREDITS README RELEASE_NOTES doc/README.LINUX doc/README.consistency doc/README.large_files /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-1.12.1
+ /usr/lib/rpm/compress-doc
Compressing documentation in /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-1.12.1...
./AUTHORS ./COPYRIGHT ./CREDITS ./README ./RELEASE_NOTES ./README.LINUX ./README.consistency ./README.large_files
Documentation compressed.
+ exit 0
skipping /usr/share/doc/parallel-netcdf-1.12.1 requires detection
Removing dependency on self: R libpnetcdf.so.4()(64bit)
Provides: elf(buildid) = 1166263e9e86d547245ea341342fa53ce31092f9 elf(buildid) = 5dc0f83da28658699053a84918fb599bcadfea8f elf(buildid) = 80b313486474a9da94953595694d99c13986ad33 elf(buildid) = 9d2618aae28ff100191e02cc6630abeba511a291 elf(buildid) = a098a52e7ff6853d470b0d97c579265fedd4867a elf(buildid) = b8ca4b27545c6c48c2cdccf98270f5c87f9d240a elf(buildid) = cfb3dcf9665712557117bf11f453142ef2e3f6d5 elf(buildid) = e9a1564919deac8bf3b954490d299840e0e43747 libpnetcdf.so.4()(64bit)
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(post): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgfortran.so.5()(64bit) libgfortran.so.5(GFORTRAN_10)(64bit) libgfortran.so.5(GFORTRAN_8)(64bit) libmpi.so.12()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: parallel-netcdf-devel-1.12.1-1.x86_64
Provides: libtool(/usr/lib64/libpnetcdf.la) pkgconfig(pnetcdf) = 1.12.1
Requires(rpmlib): rpmlib(VersionedDependencies) <= 3.0.3-1
Requires: /bin/sh libtool(/usr/lib64/libgfortran.la) libtool(/usr/lib64/libmpi.la) libtool(/usr/lib64/libmpifort.la) libtool(/usr/lib64/libquadmath.la) libtool(/usr/lib64/libstdc++.la)
Processing files: parallel-netcdf-static-1.12.1-1.x86_64
Processing files: parallel-netcdf-apidocs-1.12.1-1.noarch
Executing(%doc): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.16557
+ umask 022
+ cd /tmp/B.RBzZGJ/BUILD
+ cd pnetcdf-1.12.1
+ DOCDIR=/tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-apidocs-1.12.1
+ export DOCDIR
+ test -d /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-apidocs-1.12.1
+ /bin/mkdir -p /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-apidocs-1.12.1
+ cp -pr doc/pnetcdf-api/pnetcdf-api.pdf /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-apidocs-1.12.1
+ /usr/lib/rpm/compress-doc
Compressing documentation in /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder/usr/share/doc/parallel-netcdf-apidocs-1.12.1...
Documentation compressed.
+ exit 0
skipping /usr/share/doc/parallel-netcdf-apidocs-1.12.1 requires detection
skipping /usr/share/doc/parallel-netcdf-apidocs-1.12.1/pnetcdf-api.pdf requires detection
Processing files: parallel-netcdf-debuginfo-1.12.1-1.x86_64
Checking for unpackaged file(s): /usr/lib/rpm/check-files /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder
warning: Could not canonicalize hostname: ymir
Wrote: /tmp/B.RBzZGJ/RPMS/parallel-netcdf-1.12.1-1.x86_64.rpm
Wrote: /tmp/B.RBzZGJ/RPMS/parallel-netcdf-devel-1.12.1-1.x86_64.rpm
Wrote: /tmp/B.RBzZGJ/RPMS/parallel-netcdf-static-1.12.1-1.x86_64.rpm
Wrote: /tmp/B.RBzZGJ/RPMS/parallel-netcdf-apidocs-1.12.1-1.noarch.rpm
Wrote: /tmp/B.RBzZGJ/RPMS/parallel-netcdf-debuginfo-1.12.1-1.x86_64.rpm
Executing(%clean): /bin/sh -e /tmp/B.RBzZGJ/BUILD/tmp/rpm-tmp.17513
+ umask 022
+ cd /tmp/B.RBzZGJ/BUILD
+ cd pnetcdf-1.12.1
+ /bin/rm '--interactive=never' -rf /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder
+ rm -rf /tmp/B.RBzZGJ/BUILD/tmp/parallel-netcdf-1.12.1-root-builder
ended at: Sun Nov 22 21:48:32 2020, done in 0:09:12.542931
+ chmod -R u+rwX /tmp/B.RBzZGJ/BUILD
+ rm -rf /tmp/B.RBzZGJ/tmp /tmp/B.RBzZGJ/BUILD
test-build: not copying to /spools/ready
Begin-PLD-Builder-Info
not upgrading
End-PLD-Builder-Info
+ rm -rf /tmp/B.RBzZGJ
Begin-PLD-Builder-Info
Build-Time: user:611.93s sys:28.45s real:566.49s (faults io:46457 non-io:7341755)
Files queued for ftp:
3833300 parallel-netcdf-debuginfo-1.12.1-1.x86_64.rpm
133813 parallel-netcdf-apidocs-1.12.1-1.noarch.rpm
645229 parallel-netcdf-static-1.12.1-1.x86_64.rpm
207573 parallel-netcdf-devel-1.12.1-1.x86_64.rpm
843646 parallel-netcdf-1.12.1-1.x86_64.rpm
End-PLD-Builder-Info
|
|
