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openbabel fe01cf5c-2706-47f2-9e2f-9ee27051a3d0

Status:Failed
Source URL:https://buildlogs.pld-linux.org/pld/th/x32/FAIL/openbabel,fe01cf5c-2706-47f2-9e2f-9ee27051a3d0.bz2
text/plain URL:View!
rpm -qa of builder:View!
Date:2024/06/30 13:47:15
Runtime:0:02:51.462590

Toc:

  • prep
  • Executing(%prep): /bin/sh -e /tmp/B.jdjlr4d2/BUILD/tmp/rpm-tmp.9BGGe8
  • build
  • Executing(%build): /bin/sh -e /tmp/B.jdjlr4d2/BUILD/tmp/rpm-tmp.jRpyYn
  • error 1
  • cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/scripts && /usr/bin/cmake -E echo " except ImportError:" >> ob.py
  • install
  • Executing(%install): /bin/sh -e /tmp/B.jdjlr4d2/BUILD/tmp/rpm-tmp.A9zJJ4
  • files openbabel
  • Processing files: openbabel-2.4.1-12.x32
  • doc
  • Executing(%doc): /bin/sh -e /tmp/B.jdjlr4d2/BUILD/tmp/rpm-tmp.ADsnyW
  • files openbabel-devel
  • Processing files: openbabel-devel-2.4.1-12.x32
  • files openbabel-gui
  • Processing files: openbabel-gui-2.4.1-12.x32
  • files perl-Chemistry-OpenBabel
  • Processing files: perl-Chemistry-OpenBabel-2.4.1-12.x32
  • files python-openbabel
  • Processing files: python-openbabel-2.4.1-12.x32
  • error 2
  • error: File not found: /tmp/B.jdjlr4d2/BUILD/tmp/openbabel-2.4.1-x32-root-builder/usr/libx32/python2.7/site-packages/_openbabel.so
  • error 3
  • error: File not found: /tmp/B.jdjlr4d2/BUILD/tmp/openbabel-2.4.1-x32-root-builder/usr/libx32/python2.7/site-packages/openbabel.py[co]
  • error 4
  • error: File not found: /tmp/B.jdjlr4d2/BUILD/tmp/openbabel-2.4.1-x32-root-builder/usr/libx32/python2.7/site-packages/pybel.py[co]
  • error 5
  • RPM build errors:
  • error 6
  • error: No files produced.

Content:

request from: atler
checking if we should skip the build
started at: Sun Jun 30 13:44:20 2024
killing old processes on a builder
sending signal 9 to pid -1
cleaning up /tmp
fetching https://srcbuilder.pld-linux.org/th//srpms/fe01cf5c-2706-47f2-9e2f-9ee27051a3d0/openbabel-2.4.1-12.src.rpm
fetched 6634831 bytes, 11044.2 K/s
installing srpm: openbabel-2.4.1-12.src.rpm
+ install -d /tmp/B.jdjlr4d2/BUILD /tmp/B.jdjlr4d2/RPMS
+ LC_ALL=en_US.UTF-8
+ rpm -qp --changelog openbabel-2.4.1-12.src.rpm
* Sun Jun 30 2024 PLD Linux Team <feedback@pld-linux.org>
- For complete changelog see: http://git.pld-linux.org/?p=packages/openbabel.git;a=log;h=master
* Mon Sep 25 2023 Jan Rękorajski <baggins@pld-linux.org> 15b879f
- rebuild with gtk3 and wxWidgets 3.2, rel 12 * Fri Jul 07 2023 Jan Palus <atler@pld-linux.org> 20183c5
- perl 5.38.0 rebuild * Fri Jul 07 2023 Jan Palus <atler@pld-linux.org> 957595f
- deps for %py_* macros * Fri Jul 07 2023 Jan Palus <atler@pld-linux.org> e32ffdb
- correct libxml2-devel epoch * Fri Jul 07 2023 Jan Palus <atler@pld-linux.org> a1a79d1
- macros for %cmake * Fri Jul 07 2023 Jan Palus <atler@pld-linux.org> 6f5eb7d
- fix build with gcc >= 12 * Mon Aug 22 2022 Jan Palus <atler@pld-linux.org> fdbd439
- perl 5.36.0 rebuild * Sun Feb 27 2022 Jan Rękorajski <baggins@pld-linux.org> cc69c42
- rebuild with perl 5.34.0 * Fri May 07 2021 Jan Rękorajski <baggins@pld-linux.org> c50a876
- rebuild with perl 5.32 * Sat Mar 21 2020 Jan Rękorajski <baggins@pld-linux.org> 053af2f
- release 7 (by relup.sh) * Thu Dec 05 2019 Jan Rękorajski <baggins@pld-linux.org> e117d02
- disable java bindings - rel 6 * Thu Aug 30 2018 Jan Rękorajski <baggins@pld-linux.org> 648d0f0
- rebuild with perl 5.28.0 - release 5 (by relup.sh) * Sun Jun 03 2018 Jan Rękorajski <baggins@pld-linux.org> acd9e8e
- rebuild with ruby 2.4 - release 4 (by relup.sh) * Sun Nov 26 2017 Jan Rękorajski <baggins@pld-linux.org> 02c53f1
- stop running broken checks for very old gcc - rel 3 * Wed Oct 25 2017 Jan Rękorajski <baggins@pld-linux.org> fb5a137
- rebuild with ruby 2.3 - release 2 (by relup.sh) * Thu Jun 22 2017 Jakub Bogusz <qboosh@pld-linux.org> 932da6d
- updated URL, simplified prep * Mon Jun 19 2017 Jan Rękorajski <baggins@pld-linux.org> 06c68e4
- up to 2.4.1 * Sun Jun 11 2017 Jan Rękorajski <baggins@pld-linux.org> 22fb7ed
- perl req/prov fix - release 7 (by relup.sh) * Sun Jun 11 2017 Jan Rękorajski <baggins@pld-linux.org> 146b3f5
- rebuild with perl 5.26 - release 6 (by relup.sh) * Sun Oct 30 2016 Jan Rękorajski <baggins@pld-linux.org> ab53a33
- rebuild with perl 5.24.0 - release 5 (by relup.sh) + rpm -Uhv --nodeps --define '_topdir /tmp/B.jdjlr4d2' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' openbabel-2.4.1-12.src.rpm Updating / installing... openbabel-2.4.1-12 ######################################## + rm -f openbabel-2.4.1-12.src.rpm + install -m 700 -d /tmp/B.jdjlr4d2/BUILD/tmp + TMPDIR=/tmp/B.jdjlr4d2/BUILD/tmp + exec nice -n 0 rpmbuild -bp --short-circuit --nodeps --define '_topdir /tmp/B.jdjlr4d2' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x32-pld-linux --define 'prep exit 0' /tmp/B.jdjlr4d2/openbabel.spec warning: line 68: It's not recommended to have unversioned Obsoletes: Obsoletes: openbabel-static warning: Macro expanded in comment on line 264: %{py_sitedir}/openbabel-1.7-py*.egg-info Building target platforms: x32-pld-linux Building for target x32-pld-linux RPM build warnings: line 68: It's not recommended to have unversioned Obsoletes: Obsoletes: openbabel-static Macro expanded in comment on line 264: %{py_sitedir}/openbabel-1.7-py*.egg-info checking BuildConflict-ing packages rpm: warning: line 68: It's not recommended to have unversioned Obsoletes: Obsoletes: openbabel-static rpm: warning: Macro expanded in comment on line 264: %{py_sitedir}/openbabel-1.7-py*.egg-info rpm: rpm: Building target platforms: x32-pld-linux rpm: Building for target x32-pld-linux rpm: rpm: RPM build warnings: rpm: line 68: It's not recommended to have unversioned Obsoletes: Obsoletes: openbabel-static rpm: Macro expanded in comment on line 264: %{py_sitedir}/openbabel-1.7-py*.egg-info rpm: no BuildConflicts found checking BR rpm: warning: line 68: It's not recommended to have unversioned Obsoletes: Obsoletes: openbabel-static rpm: warning: Macro expanded in comment on line 264: %{py_sitedir}/openbabel-1.7-py*.egg-info rpm: rpm: Building target platforms: x32-pld-linux rpm: Building for target x32-pld-linux rpm: rpm: RPM build warnings: rpm: line 68: It's not recommended to have unversioned Obsoletes: Obsoletes: openbabel-static rpm: Macro expanded in comment on line 264: %{py_sitedir}/openbabel-1.7-py*.egg-info rpm: no BR needed building RPM using: set -ex; : build-id: fe01cf5c-2706-47f2-9e2f-9ee27051a3d0; TMPDIR=/tmp/B.jdjlr4d2/BUILD/tmp exec nice -n 0 rpmbuild -bb --define '__jobs 28' --define '_smp_mflags -j28' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.jdjlr4d2' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x32-pld-linux /tmp/B.jdjlr4d2/openbabel.spec + : build-id: fe01cf5c-2706-47f2-9e2f-9ee27051a3d0 + TMPDIR=/tmp/B.jdjlr4d2/BUILD/tmp + exec nice -n 0 rpmbuild -bb --define '__jobs 28' --define '_smp_mflags -j28' --define '_make_opts -Otarget' --define '_pld_builder 1' --define '_topdir /tmp/B.jdjlr4d2' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --target x32-pld-linux /tmp/B.jdjlr4d2/openbabel.spec warning: line 68: It's not recommended to have unversioned Obsoletes: Obsoletes: openbabel-static warning: Macro expanded in comment on line 264: %{py_sitedir}/openbabel-1.7-py*.egg-info Building target platforms: x32-pld-linux Building for target x32-pld-linux Executing(%prep): /bin/sh -e /tmp/B.jdjlr4d2/BUILD/tmp/rpm-tmp.9BGGe8 + umask 022 + cd /tmp/B.jdjlr4d2/BUILD + cd /tmp/B.jdjlr4d2/BUILD + rm -rf openbabel-openbabel-2-4-1 + /bin/gzip -dc /tmp/B.jdjlr4d2/openbabel-2.4.1.tar.gz + /bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd openbabel-openbabel-2-4-1 + /bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (openbabel-prefix.patch):' Patch #0 (openbabel-prefix.patch): + </tmp/B.jdjlr4d2/openbabel-prefix.patch + /usr/bin/patch -s -f -p1 '--fuzz=0' + echo 'Patch #1 (perl-x32.patch):' Patch #1 (perl-x32.patch): + </tmp/B.jdjlr4d2/perl-x32.patch + /usr/bin/patch -s -f -p1 '--fuzz=0' + echo 'Patch #2 (perl-install.patch):' Patch #2 (perl-install.patch): + </tmp/B.jdjlr4d2/perl-install.patch + /usr/bin/patch -s -f -p1 '--fuzz=0' + echo 'Patch #3 (ruby-install.patch):' Patch #3 (ruby-install.patch): + </tmp/B.jdjlr4d2/ruby-install.patch + /usr/bin/patch -s -f -p1 '--fuzz=0' + echo 'Patch #4 (gcc6.patch):' Patch #4 (gcc6.patch): + </tmp/B.jdjlr4d2/gcc6.patch + /usr/bin/patch -s -f -p1 '--fuzz=0' + echo 'Patch #5 (plugindir.patch):' Patch #5 (plugindir.patch): + </tmp/B.jdjlr4d2/plugindir.patch + /usr/bin/patch -s -f -p1 '--fuzz=0' + echo 'Patch #6 (cmake.patch):' Patch #6 (cmake.patch): + </tmp/B.jdjlr4d2/cmake.patch + /usr/bin/patch -s -f -p1 '--fuzz=0' + echo 'Patch #7 (gcc12.patch):' Patch #7 (gcc12.patch): + </tmp/B.jdjlr4d2/gcc12.patch + /usr/bin/patch -s -f -p1 '--fuzz=0' + RPM_EC=0 + jobs -p + exit 0 Executing(%build): /bin/sh -e /tmp/B.jdjlr4d2/BUILD/tmp/rpm-tmp.jRpyYn HOME=/home/users/builder PATH=/home/users/builder/GNUstep/Tools:/bin:/usr/bin:/usr/local/bin TMPDIR=/tmp/B.jdjlr4d2/BUILD/tmp + umask 022 + cd /tmp/B.jdjlr4d2/BUILD + cd openbabel-openbabel-2-4-1 + CC=x86_64-pld-linux-gnux32-gcc CXX=x86_64-pld-linux-gnux32-g++ CPPFLAGS='' /usr/bin/cmake '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_BUILD_TYPE=PLD' '-DCMAKE_SYSTEM_NAME=Linux' '-DCMAKE_SYSTEM_VERSION=6.8.6-1' '-DCMAKE_CROSSCOMPILING:BOOL=FALSE' '-DCMAKE_SYSTEM_PROCESSOR=x86_64' '-DCMAKE_INSTALL_BINDIR:PATH=/usr/bin' '-DCMAKE_INSTALL_SBINDIR:PATH=/usr/sbin' '-DCMAKE_INSTALL_LIBEXECDIR:PATH=/usr/libexec' '-DCMAKE_INSTALL_SYSCONFDIR:PATH=/etc' '-DCMAKE_INSTALL_SHAREDSTATEDIRPATH:PATH=/var/lib' '-DCMAKE_INSTALL_LOCALSTATEDIRPATH:PATH=/var' '-DCMAKE_INSTALL_LIBDIR:PATH=/usr/libx32' '-DCMAKE_INSTALL_INCLUDEDIR:PATH=/usr/include' '-DCMAKE_INSTALL_OLDINCLUDEDIR:PATH=/usr/include' '-DCMAKE_INSTALL_DATAROOTDIR:PATH=/usr/share' '-DCMAKE_INSTALL_DATADIR:PATH=/usr/share' '-DCMAKE_INSTALL_INFODIR:PATH=/usr/share/info' '-DCMAKE_INSTALL_LOCALEDIR:PATH=/usr/share/locale' '-DCMAKE_INSTALL_MANDIR:PATH=/usr/share/man' '-DCMAKE_INSTALL_DOCDIR:PATH=/usr/share/doc' '-DCMAKE_INSTALL_PREFIX:PATH=/usr' '-DSYSCONF_INSTALL_DIR:PATH=/etc' '-DCMAKE_CXX_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_C_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_Fortran_FLAGS_PLD=-O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG' '-DCMAKE_EXE_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DCMAKE_SHARED_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DCMAKE_MODULE_LINKER_FLAGS_PLD=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' '-DLIB_SUFFIX=x32' '-DBUILD_SHARED_LIBS:BOOL=ON' . '-DBIN_INSTALL_DIR=/usr/bin' '-DLIB_INSTALL_DIR=libx32' '-DCSHARP_EXECUTABLE=/usr/bin/mcs' '-DCMAKE_C_FLAGS_RELEASE=-DNDEBUG' '-DCMAKE_CXX_FLAGS_RELEASE=-DNDEBUG' '-DOBPERL_INSTALLDIRS=vendor' '-DPERL_BINDINGS=ON' '-DPYTHON_BINDINGS=ON' '-DRUBY_BINDINGS=ON' '-DRUN_SWIG=ON' '-DOPENBABEL_USE_SYSTEM_INCHI=ON' '-DwxWidgets_CONFIG_EXECUTABLE=/usr/bin/wx-gtk3-unicode-config' '-DPERLLIB_INSTALL_DIR=/usr/libx32/perl5/vendor_perl/5.40.0/x86_64-pld-linux-gnux32-thread-multi' '-DRUBYLIB_INSTALL_DIR=/usr/libx32/ruby/vendor_ruby/2.6' CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument <min> value or use a ...<max> suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.3.0 -- The CXX compiler identification is GNU 13.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-pld-linux-gnux32-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-pld-linux-gnux32-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:16 (cmake_policy): The OLD behavior for policy CMP0005 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. CMake Deprecation Warning at CMakeLists.txt:18 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (INCHI) does not match the name of the calling package (Inchi). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/modules/FindInchi.cmake:19 (find_package_handle_standard_args) CMakeLists.txt:148 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found INCHI: /usr/libx32/libinchi.so CMake Warning (dev) at /usr/share/cmake/Modules/FindPkgConfig.cmake:414 (list): Policy CMP0007 is not set: list command no longer ignores empty elements. Run "cmake --help-policy CMP0007" for policy details. Use the cmake_policy command to set the policy and suppress this warning. List has value = [;/usr/libx32/pkgconfig;/usr/share/pkgconfig]. Call Stack (most recent call first): /usr/share/cmake/Modules/FindPkgConfig.cmake:560 (_pkg_set_path_internal) /usr/share/cmake/Modules/FindPkgConfig.cmake:841 (_pkg_check_modules_internal) /usr/share/cmake/Modules/FindLibXml2.cmake:58 (PKG_CHECK_MODULES) CMakeLists.txt:165 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found LibXml2: /usr/libx32/libxml2.so (found version "2.12.8") -- Found ZLIB: /usr/libx32/libz.so (found version "1.3.1") -- Found wxWidgets: -L/usr/libx32;-pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.5") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done CMake Warning (dev) at CMakeLists.txt:240 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'cairo' CMake Warning (dev) at /usr/share/cmake/Modules/FindPkgConfig.cmake:414 (list): Policy CMP0007 is not set: list command no longer ignores empty elements. Run "cmake --help-policy CMP0007" for policy details. Use the cmake_policy command to set the policy and suppress this warning. List has value = [;/usr/libx32/pkgconfig;/usr/share/pkgconfig]. Call Stack (most recent call first): /usr/share/cmake/Modules/FindPkgConfig.cmake:560 (_pkg_set_path_internal) /usr/share/cmake/Modules/FindPkgConfig.cmake:841 (_pkg_check_modules_internal) cmake/modules/FindCairo.cmake:27 (pkg_check_modules) CMakeLists.txt:461 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found cairo, version 1.18.0 -- Found Cairo: /usr/libx32/libcairo.so -- Cairo found. PNG output will be supported. -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:215 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python (found version "3.10.14") CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:239 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument <min> value or use a ...<max> suffix to tell CMake that the project does not need compatibility with older versions. -- Found SWIG: /usr/bin/swig (found version "4.1.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.1.1", minimum required is "2.0") CMake Warning (dev) at scripts/CMakeLists.txt:41 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at scripts/CMakeLists.txt:50 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/libx32/libpython3.10.so (found version "3.10.14") -- Python bindings will be compiled -- Found Perl: /usr/bin/perl (found version "5.40.0") -- Found PerlLibs: /usr/libx32/libperl.so (found version "5.40.0") -- Perl bindings will be compiled -- Found Ruby: /usr/bin/ruby (found suitable version "2.6.10", minimum required is "1.8.0") -- Ruby bindings will be compiled -- Configuring done (6.2s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_PLD CMAKE_INSTALL_BINDIR CMAKE_INSTALL_DATADIR CMAKE_INSTALL_DATAROOTDIR CMAKE_INSTALL_DOCDIR CMAKE_INSTALL_INCLUDEDIR CMAKE_INSTALL_INFODIR CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LIBEXECDIR CMAKE_INSTALL_LOCALEDIR CMAKE_INSTALL_LOCALSTATEDIRPATH CMAKE_INSTALL_MANDIR CMAKE_INSTALL_OLDINCLUDEDIR CMAKE_INSTALL_SBINDIR CMAKE_INSTALL_SHAREDSTATEDIRPATH CMAKE_INSTALL_SYSCONFDIR CSHARP_EXECUTABLE OBPERL_INSTALLDIRS SYSCONF_INSTALL_DIR -- Build files have been written to: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 + /usr/bin/make -Otarget -j28 /usr/bin/cmake -S/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 -B/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/CMakeFiles /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src 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-I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/format.o -MF CMakeFiles/openbabel.dir/format.o.d -o CMakeFiles/openbabel.dir/format.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/format.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/format.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/dlhandler.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/base.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/base.o -MF CMakeFiles/openbabel.dir/base.o.d -o CMakeFiles/openbabel.dir/base.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/base.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/matrix.o -MF CMakeFiles/openbabel.dir/matrix.o.d -o CMakeFiles/openbabel.dir/matrix.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/matrix.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.o -MF CMakeFiles/openbabel.dir/chargemodel.o.d -o CMakeFiles/openbabel.dir/chargemodel.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/chargemodel.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/chargemodel.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/chargemodel.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/dlhandler.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/bitvec.o -MF CMakeFiles/openbabel.dir/bitvec.o.d -o CMakeFiles/openbabel.dir/bitvec.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/bitvec.cpp /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/bitvec.cpp: In member function 'int OpenBabel::OBBitVec::NextBit(int) const': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/bitvec.cpp:69:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 69 | {register int m; \ | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/bitvec.cpp:234:13: note: in expansion of macro 'LowBit' 234 | LowBit(s,bit); | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/bitvec.cpp:69:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 69 | {register int m; \ | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/bitvec.cpp:246:13: note: in expansion of macro 'LowBit' 246 | LowBit(s, bit); | ^~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.o -MF CMakeFiles/openbabel.dir/fingerprint.o.d -o CMakeFiles/openbabel.dir/fingerprint.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/fingerprint.h:28, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp:27: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp: In member function 'bool OpenBabel::FastSearch::Find(OpenBabel::OBBase*, std::vector<unsigned int>&, unsigned int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp:149:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 149 | register unsigned int* p; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp:150:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 150 | register unsigned int* ppat; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp:151:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 151 | register unsigned int a; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp: In member function 'bool OpenBabel::FastSearch::FindMatch(OpenBabel::OBBase*, std::vector<unsigned int>&, unsigned int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp:200:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 200 | register unsigned int* p; // current position in index | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp:201:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 201 | register unsigned int* ppat; // current position in target FP | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp: In member function 'bool OpenBabel::FastSearch::FindSimilar(OpenBabel::OBBase*, std::multimap<double, unsigned int>&, double, double)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp:237:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 237 | register unsigned int* p; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp:238:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 238 | register unsigned int i; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp: In member function 'bool OpenBabel::FastSearch::FindSimilar(OpenBabel::OBBase*, std::multimap<double, unsigned int>&, int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp:272:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 272 | register unsigned int* p; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprint.cpp:273:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 273 | register unsigned int i; | ^ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/data_utilities.o -MF CMakeFiles/openbabel.dir/data_utilities.o.d -o CMakeFiles/openbabel.dir/data_utilities.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/data_utilities.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/griddata.o -MF CMakeFiles/openbabel.dir/griddata.o.d -o CMakeFiles/openbabel.dir/griddata.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/griddata.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/molchrg.o -MF CMakeFiles/openbabel.dir/molchrg.o.d -o CMakeFiles/openbabel.dir/molchrg.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/molchrg.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/descriptor.o -MF CMakeFiles/openbabel.dir/descriptor.o.d -o CMakeFiles/openbabel.dir/descriptor.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptor.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/descriptor.h:27, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptor.cpp:23: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/sstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/oberror.h:26, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptor.cpp:20: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.o -MF CMakeFiles/openbabel.dir/bondtyper.o.d -o CMakeFiles/openbabel.dir/bondtyper.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/bondtyper.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/grid.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/grid.o -MF CMakeFiles/openbabel.dir/grid.o.d -o CMakeFiles/openbabel.dir/grid.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/grid.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/op.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/op.o -MF CMakeFiles/openbabel.dir/op.o.d -o CMakeFiles/openbabel.dir/op.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/op.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/op.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/chiral.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/chiral.o -MF CMakeFiles/openbabel.dir/chiral.o.d -o CMakeFiles/openbabel.dir/chiral.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/chiral.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/bond.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/bond.o -MF CMakeFiles/openbabel.dir/bond.o.d -o CMakeFiles/openbabel.dir/bond.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/bond.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/oberror.o -MF CMakeFiles/openbabel.dir/oberror.o.d -o CMakeFiles/openbabel.dir/oberror.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/oberror.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/rand.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/rand.o -MF CMakeFiles/openbabel.dir/rand.o.d -o CMakeFiles/openbabel.dir/rand.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp: In function 'unsigned int OpenBabel::isqrt(unsigned int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:96:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 96 | register unsigned int temp; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:97:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 97 | register unsigned int rem; | ^~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:98:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 98 | register int i,result; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:98:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 98 | register int i,result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp: In function 'int OpenBabel::IsOddPrime(unsigned int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:136:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 136 | register unsigned int root; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:137:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 137 | register unsigned int i; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp: In function 'void OpenBabel::DoubleMultiply(unsigned int, unsigned int, DoubleType*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:204:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 204 | register unsigned int x0, x1, x2, x3; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:204:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 204 | register unsigned int x0, x1, x2, x3; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:204:35: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 204 | register unsigned int x0, x1, x2, x3; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:204:39: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 204 | register unsigned int x0, x1, x2, x3; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:205:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 205 | register unsigned int hx, lx; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:205:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 205 | register unsigned int hx, lx; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:206:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 206 | register unsigned int hy, ly; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:206:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 206 | register unsigned int hy, ly; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp: In function 'unsigned int OpenBabel::DoubleModulus(DoubleType*, unsigned int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:259:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 259 | register unsigned int d1, d0; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:259:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 259 | register unsigned int d1, d0; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:260:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 260 | register unsigned int r1, r0; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:260:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 260 | register unsigned int r1, r0; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:261:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 261 | register unsigned int m,s; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:261:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 261 | register unsigned int m,s; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp: In function 'int OpenBabel::DeterminePotency(unsigned int, unsigned int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:300:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 300 | register unsigned int k; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:301:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 301 | register unsigned int b; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:302:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 302 | register int s; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp: In function 'int OpenBabel::DetermineFactors(unsigned int, unsigned int*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:318:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 318 | register unsigned int *ptr; | ^~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:319:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 319 | register unsigned int half; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:320:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 320 | register unsigned int i; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp: In function 'unsigned int OpenBabel::DetermineIncrement(unsigned int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:340:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register unsigned int hi,lo; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:340:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register unsigned int hi,lo; | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:341:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 341 | register unsigned int half; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:342:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 342 | register unsigned int i; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp: In function 'int OpenBabel::DetermineSequence(unsigned int, unsigned int*, unsigned int*, unsigned int*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:374:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 374 | register unsigned int a=0, c; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:374:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 374 | register unsigned int a=0, c; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:375:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 375 | register unsigned int b; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:376:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 376 | register int pot,best; | ^~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:376:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 376 | register int pot,best; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:377:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 377 | register int count; | ^~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:378:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 378 | register int flag; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:379:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 379 | register int i; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp: In function 'void OpenBabel::GenerateSequence(unsigned int, unsigned int, unsigned int, unsigned int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:431:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 431 | register unsigned int i; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rand.cpp:432:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 432 | register unsigned int x; | ^ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/graphsym.o -MF CMakeFiles/openbabel.dir/graphsym.o.d -o CMakeFiles/openbabel.dir/graphsym.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/graphsym.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/kekulize.o -MF CMakeFiles/openbabel.dir/kekulize.o.d -o CMakeFiles/openbabel.dir/kekulize.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/kekulize.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/plugin.o -MF CMakeFiles/openbabel.dir/plugin.o.d -o CMakeFiles/openbabel.dir/plugin.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/plugin.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/plugin.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/dlhandler.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/obutil.o -MF CMakeFiles/openbabel.dir/obutil.o.d -o CMakeFiles/openbabel.dir/obutil.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp: In function 'void OpenBabel::qtrfit(double*, double*, int, double (*)[3])': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:683:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 683 | register int i; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp: In function 'int OpenBabel::SolveQuadratic(double, double, double)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:796:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 796 | register double Descr, Temp, TwoA; | ^~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:796:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 796 | register double Descr, Temp, TwoA; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:796:34: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 796 | register double Descr, Temp, TwoA; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp: In function 'int OpenBabel::SolveCubic(double, double, double, double)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:841:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 841 | register double TwoA, ThreeA, BOver3A; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:841:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 841 | register double TwoA, ThreeA, BOver3A; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:841:35: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 841 | register double TwoA, ThreeA, BOver3A; | ^~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:842:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 842 | register double Temp, POver3, QOver2; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:842:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 842 | register double Temp, POver3, QOver2; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:842:35: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 842 | register double Temp, POver3, QOver2; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:843:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 843 | register double Desc, Rho, Psi; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:843:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 843 | register double Desc, Rho, Psi; | ^~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obutil.cpp:843:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 843 | register double Desc, Rho, Psi; | ^~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/atom.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/atom.o -MF CMakeFiles/openbabel.dir/atom.o.d -o CMakeFiles/openbabel.dir/atom.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/atom.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/alias.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/alias.o -MF CMakeFiles/openbabel.dir/alias.o.d -o CMakeFiles/openbabel.dir/alias.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/alias.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/alias.cpp:18: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/sstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/alias.cpp:15: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/query.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/query.o -MF CMakeFiles/openbabel.dir/query.o.d -o CMakeFiles/openbabel.dir/query.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/query.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/query.cpp:26: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/query.h:27, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/query.cpp:25: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/chains.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 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-I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/data.o -MF CMakeFiles/openbabel.dir/data.o.d -o CMakeFiles/openbabel.dir/data.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/data.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 8%] Building CXX object 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CMakeFiles/openbabel.dir/tautomer.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/tautomer.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/tautomer.cpp:23: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/tautomer.cpp:20: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 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-I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.o -MF CMakeFiles/openbabel.dir/pointgroup.o.d -o CMakeFiles/openbabel.dir/pointgroup.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/pointgroup.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/obiter.o -MF CMakeFiles/openbabel.dir/obiter.o.d -o CMakeFiles/openbabel.dir/obiter.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obiter.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/generic.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 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-I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/transform.o -MF CMakeFiles/openbabel.dir/transform.o.d -o CMakeFiles/openbabel.dir/transform.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/transform.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/descriptor.h:27, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/transform.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/sstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/transform.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/rotamer.o -MF CMakeFiles/openbabel.dir/rotamer.o.d -o CMakeFiles/openbabel.dir/rotamer.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/rotamer.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 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-DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.o -MF CMakeFiles/openbabel.dir/spectrophore.o.d -o CMakeFiles/openbabel.dir/spectrophore.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/spectrophore.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/ring.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/ring.o -MF CMakeFiles/openbabel.dir/ring.o.d -o CMakeFiles/openbabel.dir/ring.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ring.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/math/transform3d.o -MF CMakeFiles/openbabel.dir/math/transform3d.o.d -o CMakeFiles/openbabel.dir/math/transform3d.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/math/transform3d.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.o -MF CMakeFiles/openbabel.dir/math/matrix3x3.o.d -o CMakeFiles/openbabel.dir/math/matrix3x3.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/math/matrix3x3.cpp /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/math/matrix3x3.cpp: In static member function 'static void OpenBabel::matrix3x3::jacobi(unsigned int, double*, double*, double*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/math/matrix3x3.cpp:566:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 566 | register int i, j, k, l; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/math/matrix3x3.cpp:566:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 566 | register int i, j, k, l; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/math/matrix3x3.cpp:566:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 566 | register int i, j, k, l; | ^ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/math/matrix3x3.cpp:566:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 566 | register int i, j, k, l; | ^ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/math/vector3.o -MF CMakeFiles/openbabel.dir/math/vector3.o.d -o CMakeFiles/openbabel.dir/math/vector3.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/math/vector3.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/obconversion.o -MF CMakeFiles/openbabel.dir/obconversion.o.d -o CMakeFiles/openbabel.dir/obconversion.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obconversion.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obconversion.cpp:48: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/fstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obconversion.cpp:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/parsmart.o -MF CMakeFiles/openbabel.dir/parsmart.o.d -o CMakeFiles/openbabel.dir/parsmart.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In function 'OpenBabel::AtomExpr* OpenBabel::CopyAtomExpr(AtomExpr*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:177:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 177 | register AtomExpr *result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In function 'OpenBabel::AtomExpr* OpenBabel::BuildAtomPred(int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:233:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 233 | register AtomExpr *result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In function 'OpenBabel::AtomExpr* OpenBabel::BuildAtomLeaf(int, int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:243:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 243 | register AtomExpr *result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In function 'OpenBabel::AtomExpr* OpenBabel::BuildAtomNot(AtomExpr*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:253:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 253 | register AtomExpr *result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In function 'OpenBabel::AtomExpr* OpenBabel::BuildAtomBin(int, AtomExpr*, AtomExpr*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:263:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 263 | register AtomExpr *result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In function 'OpenBabel::AtomExpr* OpenBabel::BuildAtomRecurs(Pattern*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:274:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 274 | register AtomExpr *result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In function 'OpenBabel::BondExpr* OpenBabel::CopyBondExpr(BondExpr*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:304:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 304 | register BondExpr *result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In function 'OpenBabel::BondExpr* OpenBabel::BuildBondLeaf(int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:387:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 387 | register BondExpr *result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In function 'OpenBabel::BondExpr* OpenBabel::BuildBondNot(BondExpr*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:396:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 396 | register BondExpr *result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In function 'OpenBabel::BondExpr* OpenBabel::BuildBondBin(int, BondExpr*, BondExpr*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:406:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 406 | register BondExpr *result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In member function 'OpenBabel::AtomExpr* OpenBabel::OBSmartsPattern::ParseComplexAtomPrimitive()': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:646:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 646 | register Pattern *pat; | ^~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:647:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 647 | register int index; | ^~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In member function 'OpenBabel::AtomExpr* OpenBabel::OBSmartsPattern::ParseAtomExpr(int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1166:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1166 | register AtomExpr *expr1 = NULL; | ^~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1167:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1167 | register AtomExpr *expr2 = NULL; | ^~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1168:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1168 | register char *prev; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In member function 'OpenBabel::BondExpr* OpenBabel::OBSmartsPattern::ParseBondExpr(int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1266:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1266 | register BondExpr *expr1 = NULL; | ^~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1267:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1267 | register BondExpr *expr2 = NULL; | ^~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1268:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1268 | register char *prev; | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In member function 'OpenBabel::Pattern* OpenBabel::OBSmartsPattern::SMARTSParser(OpenBabel::Pattern*, OpenBabel::ParseState*, int, int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1367:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1367 | register AtomExpr *aexpr; | ^~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1368:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1368 | register BondExpr *bexpr; | ^~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1369:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1369 | register int index; | ^~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In member function 'OpenBabel::Pattern* OpenBabel::OBSmartsPattern::ParseSMARTSString(char*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1682:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1682 | register Pattern *result; | ^~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In member function 'OpenBabel::Pattern* OpenBabel::OBSmartsPattern::ParseSMARTSRecord(char*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1696:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1696 | register char *src; | ^~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp: In function 'OpenBabel::AtomExpr* OpenBabel::NotAtomExpr(AtomExpr*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/parsmart.cpp:1718:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1718 | register AtomExpr *result; | ^~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/builder.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/builder.o -MF CMakeFiles/openbabel.dir/builder.o.d -o CMakeFiles/openbabel.dir/builder.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/builder.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/builder.cpp:31: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/builder.h:23, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/builder.cpp:22: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.o -MF CMakeFiles/openbabel.dir/stereo/tetranonplanar.o.d -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/tetranonplanar.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD 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-fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/typer.o -MF CMakeFiles/openbabel.dir/typer.o.d -o CMakeFiles/openbabel.dir/typer.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/typer.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/stereo.o -MF CMakeFiles/openbabel.dir/stereo/stereo.o.d -o CMakeFiles/openbabel.dir/stereo/stereo.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/stereo.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetraplanar.o -MF CMakeFiles/openbabel.dir/stereo/tetraplanar.o.d -o CMakeFiles/openbabel.dir/stereo/tetraplanar.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/tetraplanar.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat 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'/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/squareplanar.o -MF CMakeFiles/openbabel.dir/stereo/squareplanar.o.d -o CMakeFiles/openbabel.dir/stereo/squareplanar.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/squareplanar.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/forcefield.o -MF CMakeFiles/openbabel.dir/forcefield.o.d -o CMakeFiles/openbabel.dir/forcefield.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefield.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/forcefield.h:31, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefield.cpp:22: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/forcefield.h:22: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.o -MF CMakeFiles/openbabel.dir/obmolecformat.o.d -o CMakeFiles/openbabel.dir/obmolecformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obmolecformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/obmolecformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/canon.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section 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/usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/math/spacegroup.o -MF CMakeFiles/openbabel.dir/math/spacegroup.o.d -o CMakeFiles/openbabel.dir/math/spacegroup.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/math/spacegroup.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 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Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/confsearch.o -MF CMakeFiles/openbabel.dir/confsearch.o.d -o CMakeFiles/openbabel.dir/confsearch.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/confsearch.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/forcefield.h:31, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/confsearch.cpp:22: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/forcefield.h:22: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/confsearch.cpp: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/confsearch.cpp:130:66: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 130 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less<double>(), (cutoff + 0.1) )), vec.end()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/stl_function.h:1438: /usr/include/c++/13.3.0/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/confsearch.cpp: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/confsearch.cpp:442:77: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 442 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(plus<double>(), energy_offset)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.o -MF CMakeFiles/openbabel.dir/depict/depict.o.d -o CMakeFiles/openbabel.dir/depict/depict.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/depict/depict.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/mol.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/mol.o -MF CMakeFiles/openbabel.dir/mol.o.d -o CMakeFiles/openbabel.dir/mol.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/mol.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/distgeom.o -MF CMakeFiles/openbabel.dir/distgeom.o.d -o CMakeFiles/openbabel.dir/distgeom.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/distgeom.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.o -MF CMakeFiles/openbabel.dir/conformersearch.o.d -o CMakeFiles/openbabel.dir/conformersearch.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/conformersearch.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/forcefield.h:31, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/conformersearch.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/conformersearch.h:23, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/conformersearch.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.o -MF CMakeFiles/openbabel.dir/mcdlutil.o.d -o CMakeFiles/openbabel.dir/mcdlutil.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/mcdlutil.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/mcdlutil.cpp:25: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/mcdlutil.cpp:22: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.o -MF CMakeFiles/openbabel.dir/stereo/perception.o.d -o CMakeFiles/openbabel.dir/stereo/perception.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/perception.cpp /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OBMol&, OBStereo::Ref)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/perception.cpp:2871:16: warning: 'template<class _Operation> class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2871 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_atomId = std::bind1st (equal_to<OBStereo::Ref>(), atomId); | ^~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/stl_function.h:1438, from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/base.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/stereo/stereo.h:27, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/stereo/tetranonplanar.h:27, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/stereo/tetrahedral.h:27, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/perception.cpp:25: /usr/include/c++/13.3.0/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/perception.cpp:2871:88: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to<long unsigned int>; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2871 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_atomId = std::bind1st (equal_to<OBStereo::Ref>(), atomId); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OBMol&, OBStereo::Ref, OBStereo::Ref)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/perception.cpp:2903:16: warning: 'template<class _Operation> class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2903 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_implicitRef = std::bind1st (equal_to<OBStereo::Ref>(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^~~~~~~~~ /usr/include/c++/13.3.0/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/stereo/perception.cpp:2903:93: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to<long unsigned int>; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2903 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_implicitRef = std::bind1st (equal_to<OBStereo::Ref>(), (OBStereo::Ref) OBStereo::ImplicitRef); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/backward/binders.h:136:5: note: declared here 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directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats 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make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats 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src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.o -MF CMakeFiles/copyformat.dir/copyformat.o.d -o CMakeFiles/copyformat.dir/copyformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/copyformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/copyformat.cpp:14: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:24: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 16%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnulformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.o -MF CMakeFiles/nulformat.dir/nulformat.o.d -o CMakeFiles/nulformat.dir/nulformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/nulformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/nulformat.cpp:14: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:24: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 18%] Linking CXX shared module ../../libx32/copyformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/copyformat.so CMakeFiles/copyformat.dir/copyformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 18%] Built target copyformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 14%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/cansmidescriptor.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/cansmidescriptor.cpp:22: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/sstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/oberror.h:26, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/cansmidescriptor.cpp:20: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 18%] Linking CXX shared module ../../libx32/nulformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/nulformat.so CMakeFiles/nulformat.dir/nulformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 19%] Built target nulformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 15%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.o -MF CMakeFiles/plugin_ops.dir/ops/addfilename.o.d -o CMakeFiles/plugin_ops.dir/ops/addfilename.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addfilename.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addfilename.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addfilename.cpp:18: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtextformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.o -MF CMakeFiles/textformat.dir/textformat.o.d -o CMakeFiles/textformat.dir/textformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/textformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/textformat.cpp:14: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:24: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 20%] Linking CXX shared module ../../libx32/textformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/textformat.so CMakeFiles/textformat.dir/textformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 20%] Built target textformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 19%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.o -MF CMakeFiles/painterformat.dir/__/depict/commandpainter.o.d -o CMakeFiles/painterformat.dir/__/depict/commandpainter.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/depict/commandpainter.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 16%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtitleformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.o -MF CMakeFiles/titleformat.dir/titleformat.o.d -o CMakeFiles/titleformat.dir/titleformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/titleformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/titleformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 16%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.o -MF CMakeFiles/asciiformat.dir/asciiformat.o.d -o CMakeFiles/asciiformat.dir/asciiformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/asciiformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/asciiformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 21%] Linking CXX shared module ../../libx32/titleformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/titleformat.so CMakeFiles/titleformat.dir/titleformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 21%] Built target titleformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 21%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.o -MF CMakeFiles/inchiformat.dir/getinchi.o.d -o CMakeFiles/inchiformat.dir/getinchi.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/getinchi.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.o -MF CMakeFiles/plugin_ops.dir/ops/addinindex.o.d -o CMakeFiles/plugin_ops.dir/ops/addinindex.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addinindex.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addinindex.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/base.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addinindex.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpngformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.o -MF CMakeFiles/pngformat.dir/pngformat.o.d -o CMakeFiles/pngformat.dir/pngformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pngformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pngformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pngformat.cpp:13: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.o -MF CMakeFiles/painterformat.dir/painterformat.o.d -o CMakeFiles/painterformat.dir/painterformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/painterformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/painterformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 16%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolreport_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/molreport.dir/molreport.o -MF CMakeFiles/molreport.dir/molreport.o.d -o CMakeFiles/molreport.dir/molreport.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/molreport.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/molreport.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 23%] Linking CXX shared module ../../libx32/pngformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/pngformat.so CMakeFiles/pngformat.dir/pngformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 24%] Built target pngformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.o -MF CMakeFiles/MNAformat.dir/MNAformat.o.d -o CMakeFiles/MNAformat.dir/MNAformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/MNAformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/MNAformat.cpp:31: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dabinitformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.o -MF CMakeFiles/abinitformat.dir/abinitformat.o.d -o CMakeFiles/abinitformat.dir/abinitformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/abinitformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/abinitformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 23%] Linking CXX shared module ../../libx32/painterformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/painterformat.so CMakeFiles/painterformat.dir/painterformat.o CMakeFiles/painterformat.dir/__/depict/commandpainter.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 15%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprints/finger2.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/fingerprint.h:28, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprints/finger2.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprints/finger2.cpp:20: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 24%] Linking CXX shared module ../../libx32/molreport.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/molreport.so CMakeFiles/molreport.dir/molreport.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 24%] Built target painterformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 24%] Built target molreport make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 19%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/cmpdfilter.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/descriptor.h:27, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/cmpdfilter.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/sstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/oberror.h:26, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/cmpdfilter.cpp:20: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 24%] Linking CXX shared module ../../libx32/MNAformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.o -MF CMakeFiles/aoforceformat.dir/aoforceformat.o.d -o CMakeFiles/aoforceformat.dir/aoforceformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/aoforceformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/aoforceformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 25%] Built target MNAformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 16%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.o -MF CMakeFiles/reportformat.dir/reportformat.o.d -o CMakeFiles/reportformat.dir/reportformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/reportformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/reportformat.cpp:23: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 24%] Linking CXX shared module ../../libx32/abinitformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 25%] Built target abinitformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 25%] Linking CXX shared module ../../libx32/aoforceformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 26%] Built target aoforceformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.o -MF CMakeFiles/castepformat.dir/castepformat.o.d -o CMakeFiles/castepformat.dir/castepformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/castepformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/castepformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 14%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.o -MF CMakeFiles/plugin_charges.dir/charges/eem.o.d -o CMakeFiles/plugin_charges.dir/charges/eem.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/eem.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/chargemodel.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/eem.cpp:23: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/eem.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 25%] Linking CXX shared module ../../libx32/reportformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/reportformat.so CMakeFiles/reportformat.dir/reportformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 27%] Built target reportformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 26%] Linking CXX shared module ../../libx32/castepformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/castepformat.so CMakeFiles/castepformat.dir/castepformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 27%] Built target castepformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacesformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.o -MF CMakeFiles/acesformat.dir/acesformat.o.d -o CMakeFiles/acesformat.dir/acesformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/acesformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/acesformat.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsvgformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.o -MF CMakeFiles/svgformat.dir/svgformat.o.d -o CMakeFiles/svgformat.dir/svgformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/svgformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/svgformat.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 16%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.o -MF CMakeFiles/mol2format.dir/mol2format.o.d -o CMakeFiles/mol2format.dir/mol2format.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mol2format.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mol2format.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 27%] Linking CXX shared module ../../libx32/acesformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/acesformat.so CMakeFiles/acesformat.dir/acesformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 28%] Linking CXX shared module ../../libx32/svgformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/svgformat.so CMakeFiles/svgformat.dir/svgformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 28%] Built target acesformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dconfabreport_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.o -MF CMakeFiles/confabreport.dir/confabreport.o.d -o CMakeFiles/confabreport.dir/confabreport.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/confabreport.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/confabreport.cpp:34: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 28%] Built target svgformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 28%] Linking CXX shared module ../../libx32/mol2format.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/mol2format.so CMakeFiles/mol2format.dir/mol2format.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.o -MF CMakeFiles/povrayformat.dir/povrayformat.o.d -o CMakeFiles/povrayformat.dir/povrayformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/povrayformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/povrayformat.cpp:23: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/povrayformat.cpp: In function 'void OpenBabel::OutputCSTBonds(std::ostream&, OBMol&, std::string)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/povrayformat.cpp:521:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to<char>; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 521 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to<char>(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/stl_function.h:1438: /usr/include/c++/13.3.0/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/povrayformat.cpp:582:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to<char>; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 582 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to<char>(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 29%] Built target mol2format make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 28%] Linking CXX shared module ../../libx32/confabreport.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/confabreport.so CMakeFiles/confabreport.dir/confabreport.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 29%] Built target confabreport make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 29%] Linking CXX shared module ../../libx32/povrayformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 29%] Built target povrayformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 21%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.o -MF CMakeFiles/asciiformat.dir/__/depict/asciipainter.o.d -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/depict/asciipainter.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 29%] Linking CXX shared module ../../libx32/asciiformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/asciiformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 29%] Built target asciiformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.o -MF CMakeFiles/plugin_ops.dir/ops/addpolarh.o.d -o CMakeFiles/plugin_ops.dir/ops/addpolarh.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addpolarh.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addpolarh.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addpolarh.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 14%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.o -MF CMakeFiles/pdbformat.dir/pdbformat.o.d -o CMakeFiles/pdbformat.dir/pdbformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp:623:58: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 623 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13.3.0/cstdio:42, from /usr/include/c++/13.3.0/ext/string_conversions.h:45, from /usr/include/c++/13.3.0/bits/basic_string.h:4109, from /usr/include/c++/13.3.0/string:54, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:35: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp:623:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp:641:70: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 641 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp:641:29: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp:678:35: warning: '%+d' directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=] 678 | snprintf(scharge, 3, "%+d", charge); | ^~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp:678:34: note: directive argument in the range [-32768, 32767] 678 | snprintf(scharge, 3, "%+d", charge); | ^~~~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbformat.cpp:678:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 3 and 7 bytes into a destination of size 3 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 20%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrystal09format_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.o -MF CMakeFiles/crystal09format.dir/crystal09format.o.d -o CMakeFiles/crystal09format.dir/crystal09format.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/crystal09format.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/crystal09format.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/fstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/crystal09format.cpp:15: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Linking CXX shared module ../../libx32/pdbformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Built target pdbformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 16%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.o -MF CMakeFiles/inchiformat.dir/inchiformat.o.d -o CMakeFiles/inchiformat.dir/inchiformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/inchiformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/inchiformat.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/inchiformat.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/inchiformat.cpp:28: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/inchiformat.h:135:14: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 135 | : public binary_function<const string&, const string&, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 17%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dadfformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.o -MF CMakeFiles/adfformat.dir/adfformat.o.d -o CMakeFiles/adfformat.dir/adfformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/adfformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/adfformat.cpp:34: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/fstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/adfformat.cpp:28: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Linking CXX shared module ../../libx32/crystal09format.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Built target crystal09format make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 25%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/filters.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/filters.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/filters.cpp:22: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/sstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/oberror.h:26, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/filters.cpp:20: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Linking CXX shared module ../../libx32/adfformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/adfformat.so CMakeFiles/adfformat.dir/adfformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Built target adfformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 21%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.o -MF CMakeFiles/inchiformat.dir/__/ops/unique.o.d -o CMakeFiles/inchiformat.dir/__/ops/unique.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/unique.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/unique.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/unique.cpp:23: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/inchiformat.h:135:14: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 135 | : public binary_function<const string&, const string&, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 21%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddaltonformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.o -MF CMakeFiles/daltonformat.dir/daltonformat.o.d -o CMakeFiles/daltonformat.dir/daltonformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/daltonformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/daltonformat.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Linking CXX shared module ../../libx32/inchiformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.o CMakeFiles/inchiformat.dir/getinchi.o CMakeFiles/inchiformat.dir/__/ops/unique.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Built target inchiformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 26%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/inchidescriptor.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/inchidescriptor.cpp:22: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/sstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/oberror.h:26, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/inchidescriptor.cpp:20: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/inchidescriptor.cpp:24: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/inchiformat.h:135:14: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 135 | : public binary_function<const string&, const string&, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Linking CXX shared module ../../libx32/daltonformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 24%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.o -MF CMakeFiles/dmolformat.dir/dmolformat.o.d -o CMakeFiles/dmolformat.dir/dmolformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/dmolformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/dmolformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Built target daltonformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.o -MF CMakeFiles/plugin_charges.dir/charges/none.o.d -o CMakeFiles/plugin_charges.dir/charges/none.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/none.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/chargemodel.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/none.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/dlhandler.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 26%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhiaimsformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o -MF CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o.d -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fhiaimsformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fhiaimsformat.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Linking CXX shared module ../../libx32/dmolformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Built target dmolformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 24%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprints/finger3.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/fingerprint.h:28, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprints/finger3.cpp:26: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprints/finger3.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Linking CXX shared module ../../libx32/fhiaimsformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 24%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprints/fingerecfp.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/fingerprint.h:28, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprints/fingerecfp.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/fingerprints/fingerecfp.cpp:15: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Built target fhiaimsformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 27%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.o -MF CMakeFiles/plugin_charges.dir/charges/gasteiger.o.d -o CMakeFiles/plugin_charges.dir/charges/gasteiger.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/gasteiger.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/chargemodel.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/gasteiger.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/dlhandler.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Linking CXX shared module ../libx32/plugin_fingerprints.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../libx32/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Built target plugin_fingerprints make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 25%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/groupcontrib.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/descriptor.h:27, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/groupcontrib.h:28, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/groupcontrib.cpp:29: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/groupcontrib.cpp:25: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.o -MF CMakeFiles/plugin_ops.dir/ops/addnonpolarh.o.d -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addnonpolarh.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addnonpolarh.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/addnonpolarh.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/smartsdescriptors.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/descriptor.h:27, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/smartsdescriptors.cpp:22: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/sstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/oberror.h:26, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/descriptors/smartsdescriptors.cpp:20: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 29%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausszmatformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o -MF CMakeFiles/gausszmatformat.dir/gausszmatformat.o.d -o CMakeFiles/gausszmatformat.dir/gausszmatformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gausszmatformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gausszmatformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Linking CXX shared module ../libx32/plugin_descriptors.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../libx32/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Linking CXX shared module ../../libx32/gausszmatformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Built target plugin_descriptors make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Built target gausszmatformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dhinformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/hinformat.dir/hinformat.o -MF CMakeFiles/hinformat.dir/hinformat.o.d -o CMakeFiles/hinformat.dir/hinformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/hinformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/hinformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.o -MF CMakeFiles/plugin_ops.dir/ops/canonical.o.d -o CMakeFiles/plugin_ops.dir/ops/canonical.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/canonical.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/canonical.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 30%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgulpformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/gulpformat.dir/gulpformat.o -MF CMakeFiles/gulpformat.dir/gulpformat.o.d -o CMakeFiles/gulpformat.dir/gulpformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gulpformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gulpformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 14%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefieldgaff.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/forcefield.h:31, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefieldgaff.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefieldgaff.cpp:24: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefieldgaff.cpp:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Linking CXX shared module ../../libx32/hinformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/hinformat.so CMakeFiles/hinformat.dir/hinformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Linking CXX shared module ../../libx32/gulpformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 25%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfchkformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.o -MF CMakeFiles/fchkformat.dir/fchkformat.o.d -o CMakeFiles/fchkformat.dir/fchkformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fchkformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fchkformat.cpp:22: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/numeric:75, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fchkformat.cpp:14: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fchkformat.cpp: In member function 'virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fchkformat.cpp:659:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less_equal<int>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 659 | bind2nd(less_equal<int>(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/stl_function.h:1438: /usr/include/c++/13.3.0/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fchkformat.cpp:662:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<int>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 662 | bind2nd(greater<int>(), MxBond)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fchkformat.cpp:665:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less<int>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 665 | bind2nd(less<int>(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fchkformat.cpp:668:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<int>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 668 | bind2nd(greater<int>(), Natoms))) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Built target hinformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Built target gulpformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.o -MF CMakeFiles/plugin_ops.dir/ops/delpolarh.o.d -o CMakeFiles/plugin_ops.dir/ops/delpolarh.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/delpolarh.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/delpolarh.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/delpolarh.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 33%] Linking CXX shared module ../../libx32/fchkformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 34%] Built target fchkformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Djaguarformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.o -MF CMakeFiles/jaguarformat.dir/jaguarformat.o.d -o CMakeFiles/jaguarformat.dir/jaguarformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/jaguarformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/jaguarformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 29%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausscubeformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.o -MF CMakeFiles/gausscubeformat.dir/gausscubeformat.o.d -o CMakeFiles/gausscubeformat.dir/gausscubeformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gausscubeformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gausscubeformat.cpp:28: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/sstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gausscubeformat.cpp:25: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o -MF CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o.d -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/delnonpolarh.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/delnonpolarh.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/delnonpolarh.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.o -MF CMakeFiles/plugin_ops.dir/ops/changecell.o.d -o CMakeFiles/plugin_ops.dir/ops/changecell.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/changecell.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/changecell.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/changecell.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 34%] Linking CXX shared module ../../libx32/jaguarformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 34%] Built target jaguarformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 34%] Linking CXX shared module ../../libx32/gausscubeformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 35%] Built target gausscubeformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.o -MF CMakeFiles/plugin_charges.dir/charges/mmff94.o.d -o CMakeFiles/plugin_charges.dir/charges/mmff94.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/mmff94.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/chargemodel.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/mmff94.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/dlhandler.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.o -MF CMakeFiles/plugin_ops.dir/ops/gen2D.o.d -o CMakeFiles/plugin_ops.dir/ops/gen2D.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/gen2D.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/gen2D.cpp:22: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/gen2D.cpp:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolproformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/molproformat.dir/molproformat.o -MF CMakeFiles/molproformat.dir/molproformat.o.d -o CMakeFiles/molproformat.dir/molproformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/molproformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/molproformat.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 16%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.o -MF CMakeFiles/mdlformat.dir/mdlformat.o.d -o CMakeFiles/mdlformat.dir/mdlformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mdlformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mdlformat.cpp:30: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mdlformat.cpp:26: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mdlformat.cpp: In member function 'std::string OpenBabel::MDLFormat::GetTimeDate()': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mdlformat.cpp:1652:31: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 7 [-Wformat-truncation=] 1652 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mdlformat.cpp:1652:22: note: directive argument in the range [-2147483648, 2147483547] 1652 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13.3.0/cstdio:42, from /usr/include/c++/13.3.0/ext/string_conversions.h:45, from /usr/include/c++/13.3.0/bits/basic_string.h:4109, from /usr/include/c++/13.3.0/string:54, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/iomanip:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mdlformat.cpp:27: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'std::string OpenBabel::MDLFormat::GetTimeDate()' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mdlformat.cpp:1652:13: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 11 and 56 bytes into a destination of size 11 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 36%] Linking CXX shared module ../../libx32/molproformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/molproformat.so CMakeFiles/molproformat.dir/molproformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpwscfformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.o -MF CMakeFiles/pwscfformat.dir/pwscfformat.o.d -o CMakeFiles/pwscfformat.dir/pwscfformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pwscfformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pwscfformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 36%] Built target molproformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.o -MF CMakeFiles/plugin_charges.dir/charges/fromfile.o.d -o CMakeFiles/plugin_charges.dir/charges/fromfile.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/fromfile.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/chargemodel.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/fromfile.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/dlhandler.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 36%] Linking CXX shared module ../../libx32/mdlformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 36%] Built target mdlformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 36%] Linking CXX shared module ../../libx32/pwscfformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 36%] Built target pwscfformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.o -MF CMakeFiles/plugin_ops.dir/ops/loader.o.d -o CMakeFiles/plugin_ops.dir/ops/loader.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/loader.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/loader.cpp:24: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/loader.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.o -MF CMakeFiles/plugin_ops.dir/ops/forcefield.o.d -o CMakeFiles/plugin_ops.dir/ops/forcefield.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/forcefield.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/forcefield.cpp:30: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/forcefield.cpp:29: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 22%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefieldghemical.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/forcefield.h:31, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefieldghemical.h:23, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefieldghemical.cpp:23: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefieldghemical.cpp:20: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dturbomoleformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.o -MF CMakeFiles/turbomoleformat.dir/turbomoleformat.o.d -o CMakeFiles/turbomoleformat.dir/turbomoleformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/turbomoleformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/turbomoleformat.cpp:18: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 28%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.o -MF CMakeFiles/gamessformat.dir/gamessformat.o.d -o CMakeFiles/gamessformat.dir/gamessformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gamessformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gamessformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 38%] Linking CXX shared module ../../libx32/turbomoleformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 39%] Built target turbomoleformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 31%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmopacformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mopacformat.dir/mopacformat.o -MF CMakeFiles/mopacformat.dir/mopacformat.o.d -o CMakeFiles/mopacformat.dir/mopacformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mopacformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mopacformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dqchemformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/qchemformat.dir/qchemformat.o -MF CMakeFiles/qchemformat.dir/qchemformat.o.d -o CMakeFiles/qchemformat.dir/qchemformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/qchemformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/qchemformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 34%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -Dxsfformat_EXPORTS -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.o -MF CMakeFiles/xsfformat.dir/xsfformat.o.d -o CMakeFiles/xsfformat.dir/xsfformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xsfformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xsfformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 37%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.o -MF CMakeFiles/APIInterface.dir/APIInterface.o.d -o CMakeFiles/APIInterface.dir/APIInterface.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/APIInterface.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/APIInterface.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:24: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 39%] Linking CXX shared module ../../libx32/gamessformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 40%] Built target gamessformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 35%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -Dzindoformat_EXPORTS -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.o -MF CMakeFiles/zindoformat.dir/zindoformat.o.d -o CMakeFiles/zindoformat.dir/zindoformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/zindoformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/zindoformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsiestaformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.o -MF CMakeFiles/siestaformat.dir/siestaformat.o.d -o CMakeFiles/siestaformat.dir/siestaformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/siestaformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/siestaformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 39%] Linking CXX shared module ../../libx32/xsfformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 41%] Built target xsfformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.o -MF CMakeFiles/plugin_ops.dir/ops/gen3d.o.d -o CMakeFiles/plugin_ops.dir/ops/gen3d.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/gen3d.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/gen3d.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 39%] Linking CXX shared module ../../libx32/mopacformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 40%] Linking CXX shared module ../../libx32/APIInterface.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 42%] Built target APIInterface make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 43%] Built target mopacformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.o -MF CMakeFiles/plugin_ops.dir/ops/fillUC.o.d -o CMakeFiles/plugin_ops.dir/ops/fillUC.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/fillUC.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/fillUC.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 40%] Linking CXX shared module ../../libx32/qchemformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 41%] Linking CXX shared module ../../libx32/zindoformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG 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src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 41%] Linking CXX shared module ../../libx32/siestaformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 44%] Built target siestaformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.o -MF CMakeFiles/plugin_ops.dir/ops/largest.o.d -o CMakeFiles/plugin_ops.dir/ops/largest.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/largest.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/largest.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.o -MF CMakeFiles/plugin_ops.dir/ops/optransform.o.d -o CMakeFiles/plugin_ops.dir/ops/optransform.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/optransform.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/optransform.h:21, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/optransform.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/optransform.h:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 29%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.o -MF CMakeFiles/gaussformat.dir/gaussformat.o.d -o CMakeFiles/gaussformat.dir/gaussformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gaussformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gaussformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/fstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/data.h:27, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gaussformat.cpp:17: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.o -MF CMakeFiles/plugin_ops.dir/ops/opsplit.o.d -o CMakeFiles/plugin_ops.dir/ops/opsplit.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opsplit.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opsplit.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:24: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 16%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.o -MF CMakeFiles/smilesformat.dir/smilesformat.o.d -o CMakeFiles/smilesformat.dir/smilesformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/smilesformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/smilesformat.cpp:22: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, char*, bool)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/smilesformat.cpp:2989:20: warning: '%d' directive writing between 1 and 5 bytes into a region of size 4 [-Wformat-overflow=] 2989 | sprintf(iso,"%d",atom->GetIsotope()); | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/smilesformat.cpp:2989:19: note: directive argument in the range [1, 65535] 2989 | sprintf(iso,"%d",atom->GetIsotope()); | ^~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13.3.0/cstdio:42, from /usr/include/c++/13.3.0/ext/string_conversions.h:45, from /usr/include/c++/13.3.0/bits/basic_string.h:4109, from /usr/include/c++/13.3.0/string:54, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:35: In function 'int sprintf(char*, const char*, ...)', inlined from 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, char*, bool)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/smilesformat.cpp:2989:14: /usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 6 bytes into a destination of size 4 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, char*, bool)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/smilesformat.cpp:3037:29: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 3037 | sprintf(tcount,"%d", hcount); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, char*, bool)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/smilesformat.cpp:3037:18: /usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Linking CXX shared module ../../libx32/gaussformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Built target gaussformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnwchemformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.o -MF CMakeFiles/nwchemformat.dir/nwchemformat.o.d -o CMakeFiles/nwchemformat.dir/nwchemformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/nwchemformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/nwchemformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Linking CXX shared module ../../libx32/smilesformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Built target smilesformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Linking CXX shared module ../../libx32/nwchemformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Built target nwchemformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.o -MF CMakeFiles/plugin_ops.dir/ops/partialcharges.o.d -o CMakeFiles/plugin_ops.dir/ops/partialcharges.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/partialcharges.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/partialcharges.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.o -MF CMakeFiles/plugin_ops.dir/ops/readconformers.o.d -o CMakeFiles/plugin_ops.dir/ops/readconformers.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/readconformers.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/readconformers.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 27%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefielduff.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/forcefield.h:31, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefielduff.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefielduff.cpp:24: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefielduff.cpp:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 43%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.o -MF CMakeFiles/plugin_ops.dir/ops/xout.o.d -o CMakeFiles/plugin_ops.dir/ops/xout.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/xout.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/xout.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 39%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.o -MF CMakeFiles/CSRformat.dir/CSRformat.o.d -o CMakeFiles/CSRformat.dir/CSRformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CSRformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CSRformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 44%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Damberformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.o -MF CMakeFiles/amberformat.dir/amberformat.o.d -o CMakeFiles/amberformat.dir/amberformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/amberformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/amberformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 42%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.o -MF CMakeFiles/plugin_ops.dir/ops/ophighlight.o.d -o CMakeFiles/plugin_ops.dir/ops/ophighlight.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/ophighlight.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/ophighlight.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/parsmart.h:23, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/ophighlight.cpp:16: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 46%] Linking CXX shared module ../../libx32/CSRformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 46%] Built target CSRformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 41%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.o -MF CMakeFiles/PQSformat.dir/PQSformat.o.d -o CMakeFiles/PQSformat.dir/PQSformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/PQSformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/PQSformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 46%] Linking CXX shared module ../../libx32/amberformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/amberformat.so CMakeFiles/amberformat.dir/amberformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbalstformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.o -MF CMakeFiles/balstformat.dir/balstformat.o.d -o CMakeFiles/balstformat.dir/balstformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/balstformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/balstformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 47%] Built target amberformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 43%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dalchemyformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.o -MF CMakeFiles/alchemyformat.dir/alchemyformat.o.d -o CMakeFiles/alchemyformat.dir/alchemyformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/alchemyformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/alchemyformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 47%] Linking CXX shared module ../../libx32/PQSformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 43%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.o -MF CMakeFiles/plugin_ops.dir/ops/conformer.o.d -o CMakeFiles/plugin_ops.dir/ops/conformer.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/conformer.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/conformer.cpp:29: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/conformer.cpp:28: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 48%] Built target PQSformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 47%] Linking CXX shared module ../../libx32/balstformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/balstformat.so CMakeFiles/balstformat.dir/balstformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 49%] Built target balstformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 48%] Linking CXX shared module ../../libx32/alchemyformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 49%] Built target alchemyformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 27%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefieldmmff94.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/forcefields/forcefieldmmff94.cpp:31: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:24: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 49%] Linking CXX shared module ../libx32/plugin_forcefields.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../libx32/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 49%] Built target plugin_forcefields make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 44%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacrformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.o -MF CMakeFiles/acrformat.dir/acrformat.o.d -o CMakeFiles/acrformat.dir/acrformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/acrformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/acrformat.cpp:24: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/acrformat.cpp:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.o -MF CMakeFiles/plugin_ops.dir/ops/sort.o.d -o CMakeFiles/plugin_ops.dir/ops/sort.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/sort.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/sort.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/sort.cpp:31:28: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Order : public std::binary_function<std::pair<OBBase*,T>, std::pair<OBBase*,T>, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 34%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dvaspformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.o -MF CMakeFiles/vaspformat.dir/vaspformat.o.d -o CMakeFiles/vaspformat.dir/vaspformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/vaspformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/vaspformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/vaspformat.cpp:522:35: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = not_equal_to<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 522 | std::bind2nd(std::not_equal_to<double>(), 0.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/stl_function.h:1438: /usr/include/c++/13.3.0/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/vaspformat.cpp:576:36: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 576 | std::bind2nd(std::divides<double>(), max / 100.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13.3.0/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.o -MF CMakeFiles/plugin_ops.dir/ops/opisomorph.o.d -o CMakeFiles/plugin_ops.dir/ops/opisomorph.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opisomorph.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opisomorph.h:15, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opisomorph.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/parsmart.h:23, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opisomorph.cpp:15: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacheformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.o -MF CMakeFiles/cacheformat.dir/cacheformat.o.d -o CMakeFiles/cacheformat.dir/cacheformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/cacheformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/cacheformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Linking CXX shared module ../../libx32/acrformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/acrformat.so CMakeFiles/acrformat.dir/acrformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Built target acrformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.o -MF CMakeFiles/plugin_ops.dir/ops/opconfab.o.d -o CMakeFiles/plugin_ops.dir/ops/opconfab.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opconfab.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opconfab.cpp:23: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opconfab.cpp:22: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 37%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dorcaformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.o -MF CMakeFiles/orcaformat.dir/orcaformat.o.d -o CMakeFiles/orcaformat.dir/orcaformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/orcaformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/orcaformat.cpp:18: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Linking CXX shared module ../../libx32/vaspformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Built target vaspformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 46%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcarformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/carformat.dir/carformat.o -MF CMakeFiles/carformat.dir/carformat.o.d -o CMakeFiles/carformat.dir/carformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/carformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/carformat.cpp:18: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Linking CXX shared module ../../libx32/cacheformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Built target cacheformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacaoformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.o -MF CMakeFiles/cacaoformat.dir/cacaoformat.o.d -o CMakeFiles/cacaoformat.dir/cacaoformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/cacaoformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/cacaoformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dboxformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.o -MF CMakeFiles/boxformat.dir/boxformat.o.d -o CMakeFiles/boxformat.dir/boxformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/boxformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/boxformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Linking CXX shared module ../../libx32/orcaformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbgfformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.o -MF CMakeFiles/bgfformat.dir/bgfformat.o.d -o CMakeFiles/bgfformat.dir/bgfformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/bgfformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/bgfformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 51%] Built target orcaformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Linking CXX shared module ../../libx32/carformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/carformat.so CMakeFiles/carformat.dir/carformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Linking CXX shared module ../../libx32/cacaoformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 51%] Built target carformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 51%] Built target cacaoformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 51%] Linking CXX shared module ../../libx32/boxformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/boxformat.so CMakeFiles/boxformat.dir/boxformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats 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src/formats/CMakeFiles/lmpdatformat.dir/build make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 51%] Built target boxformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 51%] Linking CXX shared module ../../libx32/bgfformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 52%] Built target bgfformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 45%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.o -MF CMakeFiles/plugin_ops.dir/ops/opalign.o.d -o CMakeFiles/plugin_ops.dir/ops/opalign.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opalign.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/op.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opalign.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/ops/opalign.cpp:19: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 46%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcccformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cccformat.dir/cccformat.o -MF CMakeFiles/cccformat.dir/cccformat.o.d -o CMakeFiles/cccformat.dir/cccformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/cccformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/cccformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 54%] Linking CXX shared module ../../libx32/cccformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/cccformat.so CMakeFiles/cccformat.dir/cccformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 54%] Built target cccformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 46%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchem3dformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.o -MF CMakeFiles/chem3dformat.dir/chem3dformat.o.d -o CMakeFiles/chem3dformat.dir/chem3dformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chem3dformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chem3dformat.cpp:18: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/math/matrix3x3.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chem3dformat.cpp:17: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chem3dformat.cpp: In static member function 'static bool OpenBabel::CHEM3D1Format::WriteChem3d(std::ostream&, OpenBabel::OBMol&, const char*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chem3dformat.cpp:298:52: warning: '%d' directive output may be truncated writing between 1 and 10 bytes into a region of size 4 [-Wformat-truncation=] 298 | snprintf(type_name, sizeof(type_num), "%d",type_num); | ^~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chem3dformat.cpp:298:51: note: directive argument in the range [-536870912, 536873461] 298 | snprintf(type_name, sizeof(type_num), "%d",type_num); | ^~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13.3.0/cstdio:42, from /usr/include/c++/13.3.0/ext/string_conversions.h:45, from /usr/include/c++/13.3.0/bits/basic_string.h:4109, from /usr/include/c++/13.3.0/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'static bool OpenBabel::CHEM3D1Format::WriteChem3d(std::ostream&, OpenBabel::OBMol&, const char*)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chem3dformat.cpp:298:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 53%] Linking CXX shared module ../libx32/plugin_ops.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../libx32/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.o CMakeFiles/plugin_ops.dir/ops/addinindex.o CMakeFiles/plugin_ops.dir/ops/addpolarh.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.o CMakeFiles/plugin_ops.dir/ops/canonical.o CMakeFiles/plugin_ops.dir/ops/changecell.o CMakeFiles/plugin_ops.dir/ops/delpolarh.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o CMakeFiles/plugin_ops.dir/ops/gen2D.o CMakeFiles/plugin_ops.dir/ops/fillUC.o CMakeFiles/plugin_ops.dir/ops/forcefield.o CMakeFiles/plugin_ops.dir/ops/gen3d.o CMakeFiles/plugin_ops.dir/ops/largest.o CMakeFiles/plugin_ops.dir/ops/loader.o CMakeFiles/plugin_ops.dir/ops/opsplit.o CMakeFiles/plugin_ops.dir/ops/optransform.o CMakeFiles/plugin_ops.dir/ops/partialcharges.o CMakeFiles/plugin_ops.dir/ops/readconformers.o CMakeFiles/plugin_ops.dir/ops/sort.o CMakeFiles/plugin_ops.dir/ops/opisomorph.o CMakeFiles/plugin_ops.dir/ops/ophighlight.o CMakeFiles/plugin_ops.dir/ops/xout.o CMakeFiles/plugin_ops.dir/ops/conformer.o CMakeFiles/plugin_ops.dir/ops/opalign.o CMakeFiles/plugin_ops.dir/ops/opconfab.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 55%] Built target plugin_ops make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 36%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessukformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.o -MF CMakeFiles/gamessukformat.dir/gamessukformat.o.d -o CMakeFiles/gamessukformat.dir/gamessukformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gamessukformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gamessukformat.cpp:14: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 46%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemtoolformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.o -MF CMakeFiles/chemtoolformat.dir/chemtoolformat.o.d -o CMakeFiles/chemtoolformat.dir/chemtoolformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chemtoolformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chemtoolformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 55%] Linking CXX shared module ../../libx32/chem3dformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 55%] Built target chem3dformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 46%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawct_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.o -MF CMakeFiles/chemdrawct.dir/chemdrawct.o.d -o CMakeFiles/chemdrawct.dir/chemdrawct.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chemdrawct.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chemdrawct.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 55%] Linking CXX shared module ../../libx32/chemtoolformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 56%] Built target chemtoolformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 55%] Linking CXX shared module ../../libx32/gamessukformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 56%] Built target gamessukformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend /usr/bin/make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 56%] Linking CXX shared module ../../libx32/chemdrawct.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Built target chemdrawct make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 49%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcssrformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cssrformat.dir/cssrformat.o -MF CMakeFiles/cssrformat.dir/cssrformat.o.d -o CMakeFiles/cssrformat.dir/cssrformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/cssrformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/cssrformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Linking CXX shared module ../../libx32/cssrformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Built target cssrformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 47%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrkformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/crkformat.dir/crkformat.o -MF CMakeFiles/crkformat.dir/crkformat.o.d -o CMakeFiles/crkformat.dir/crkformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/crkformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/crkformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fhformat.dir/fhformat.o -MF CMakeFiles/fhformat.dir/fhformat.o.d -o CMakeFiles/fhformat.dir/fhformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fhformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fhformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Linking CXX shared module ../../libx32/crkformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/crkformat.so CMakeFiles/crkformat.dir/crkformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Built target crkformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Linking CXX shared module ../../libx32/fhformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/fhformat.so CMakeFiles/fhformat.dir/fhformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfeatformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/featformat.dir/featformat.o -MF CMakeFiles/featformat.dir/featformat.o.d -o CMakeFiles/featformat.dir/featformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/featformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/featformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Built target fhformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastaformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fastaformat.dir/fastaformat.o -MF CMakeFiles/fastaformat.dir/fastaformat.o.d -o CMakeFiles/fastaformat.dir/fastaformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fastaformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fastaformat.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dghemicalformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.o -MF CMakeFiles/ghemicalformat.dir/ghemicalformat.o.d -o CMakeFiles/ghemicalformat.dir/ghemicalformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/ghemicalformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/ghemicalformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Linking CXX shared module ../../libx32/featformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/featformat.so CMakeFiles/featformat.dir/featformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 58%] Built target featformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Linking CXX shared module ../../libx32/fastaformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfpsformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fpsformat.dir/fpsformat.o -MF CMakeFiles/fpsformat.dir/fpsformat.o.d -o CMakeFiles/fpsformat.dir/fpsformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fpsformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fpsformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fpsformat.cpp:15: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 58%] Built target fastaformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 51%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgromos96format_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/gromos96format.dir/gromos96format.o -MF CMakeFiles/gromos96format.dir/gromos96format.o.d -o CMakeFiles/gromos96format.dir/gromos96format.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gromos96format.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/gromos96format.cpp:54: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 58%] Linking CXX shared module ../../libx32/ghemicalformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Built target ghemicalformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Linking CXX shared module ../../libx32/fpsformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfreefracformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/freefracformat.dir/freefracformat.o -MF CMakeFiles/freefracformat.dir/freefracformat.o.d -o CMakeFiles/freefracformat.dir/freefracformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/freefracformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/freefracformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Built target fpsformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 49%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dexyzformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/exyzformat.dir/exyzformat.o -MF CMakeFiles/exyzformat.dir/exyzformat.o.d -o CMakeFiles/exyzformat.dir/exyzformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/exyzformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/exyzformat.cpp:18: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 50%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfingerprintformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.o -MF CMakeFiles/fingerprintformat.dir/fingerprintformat.o.d -o CMakeFiles/fingerprintformat.dir/fingerprintformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fingerprintformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fingerprintformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fingerprintformat.cpp:15: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Linking CXX shared module ../../libx32/gromos96format.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Built target gromos96format make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Linking CXX shared module ../../libx32/freefracformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Built target freefracformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Linking CXX shared module ../../libx32/exyzformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Linking CXX shared module ../../libx32/fingerprintformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Built target exyzformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Built target fingerprintformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 49%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastsearchformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.o -MF CMakeFiles/fastsearchformat.dir/fastsearchformat.o.d -o CMakeFiles/fastsearchformat.dir/fastsearchformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fastsearchformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fastsearchformat.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/sstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/fastsearchformat.cpp:16: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 60%] Linking CXX shared module ../../libx32/fastsearchformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastsearchformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/fastsearchformat.so CMakeFiles/fastsearchformat.dir/fastsearchformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpqcformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.o -MF CMakeFiles/mpqcformat.dir/mpqcformat.o.d -o CMakeFiles/mpqcformat.dir/mpqcformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mpqcformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mpqcformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 60%] Built target fastsearchformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 56%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpdformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mpdformat.dir/mpdformat.o -MF CMakeFiles/mpdformat.dir/mpdformat.o.d -o CMakeFiles/mpdformat.dir/mpdformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mpdformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mpdformat.cpp:22: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 55%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmodformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mmodformat.dir/mmodformat.o -MF CMakeFiles/mmodformat.dir/mmodformat.o.d -o CMakeFiles/mmodformat.dir/mmodformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mmodformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mmodformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 60%] Linking CXX shared module ../../libx32/mpqcformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsiformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/msiformat.dir/msiformat.o -MF CMakeFiles/msiformat.dir/msiformat.o.d -o CMakeFiles/msiformat.dir/msiformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/msiformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/msiformat.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 60%] Built target mpqcformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 43%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.o -MF CMakeFiles/MCDLformat.dir/MCDLformat.o.d -o CMakeFiles/MCDLformat.dir/MCDLformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/MCDLformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/MCDLformat.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 49%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddlpolyformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.o -MF CMakeFiles/dlpolyformat.dir/dlpolyformat.o.d -o CMakeFiles/dlpolyformat.dir/dlpolyformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/dlpolyformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/dlpolyformat.cpp:14: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 60%] Linking CXX shared module ../../libx32/mpdformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 60%] Linking CXX shared module ../../libx32/mmodformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 62%] Built target mpdformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 62%] Built target mmodformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 60%] Linking CXX shared module ../../libx32/msiformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/msiformat.so CMakeFiles/msiformat.dir/msiformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 63%] Built target msiformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 61%] Linking CXX shared module ../../libx32/dlpolyformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 51%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgroformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/groformat.dir/groformat.o -MF CMakeFiles/groformat.dir/groformat.o.d -o CMakeFiles/groformat.dir/groformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/groformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/groformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 63%] Built target dlpolyformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 60%] Linking CXX shared module ../../libx32/MCDLformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsmsformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/msmsformat.dir/msmsformat.o -MF CMakeFiles/msmsformat.dir/msmsformat.o.d -o CMakeFiles/msmsformat.dir/msmsformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/msmsformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/msmsformat.cpp:27: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/msmsformat.cpp:26: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 63%] Built target MCDLformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 63%] Linking CXX shared module ../../libx32/groformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/groformat.so CMakeFiles/groformat.dir/groformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 64%] Linking CXX shared module ../../libx32/msmsformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 64%] Built target msmsformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 64%] Built target groformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Doutformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/outformat.dir/outformat.o -MF CMakeFiles/outformat.dir/outformat.o.d -o CMakeFiles/outformat.dir/outformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/outformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/outformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 65%] Linking CXX shared module ../../libx32/outformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/outformat.so CMakeFiles/outformat.dir/outformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 65%] Built target outformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 52%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlmpdatformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.o -MF CMakeFiles/lmpdatformat.dir/lmpdatformat.o.d -o CMakeFiles/lmpdatformat.dir/lmpdatformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp:528:73: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32694 and 32736 [-Wformat-truncation=] 528 | "%-4d %4d %4d %4d %4d %4d # %11s\n", | ^~~~ ...... 535 | DihedralString); | ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13.3.0/cstdio:42, from /usr/include/c++/13.3.0/ext/string_conversions.h:45, from /usr/include/c++/13.3.0/bits/basic_string.h:4109, from /usr/include/c++/13.3.0/string:54, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:35: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp:527:16: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 45 and 32843 bytes into a destination of size 32768 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp:510:73: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32694 and 32736 [-Wformat-truncation=] 510 | "%-4d %4d %4d %4d %4d %4d # %11s\n", | ^~~~ ...... 517 | DihedralString); | ~~~~~~~~~~~~~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp:509:16: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 45 and 32843 bytes into a destination of size 32768 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp:468:61: warning: '%8s' directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32706 and 32741 [-Wformat-truncation=] 468 | "%-4d %4d %4d %4d %4d # %8s\n", | ^~~ ...... 474 | AngleString); | ~~~~~~~~~~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp:467:15: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 37 and 32831 bytes into a destination of size 32768 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp:452:61: warning: '%8s' directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32706 and 32741 [-Wformat-truncation=] 452 | "%-4d %4d %4d %4d %4d # %8s\n", | ^~~ ...... 458 | AngleString); | ~~~~~~~~~~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lmpdatformat.cpp:451:15: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 37 and 32831 bytes into a destination of size 32768 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 65%] Linking CXX shared module ../../libx32/lmpdatformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 65%] Built target lmpdatformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpointcloudformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.o -MF CMakeFiles/pointcloudformat.dir/pointcloudformat.o.d -o CMakeFiles/pointcloudformat.dir/pointcloudformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pointcloudformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pointcloudformat.cpp:29: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pointcloudformat.cpp:28: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 57%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dopendxformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/opendxformat.dir/opendxformat.o -MF CMakeFiles/opendxformat.dir/opendxformat.o.d -o CMakeFiles/opendxformat.dir/opendxformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/opendxformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/opendxformat.cpp:24: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/sstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/opendxformat.cpp:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 56%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmoldenformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/moldenformat.dir/moldenformat.o -MF CMakeFiles/moldenformat.dir/moldenformat.o.d -o CMakeFiles/moldenformat.dir/moldenformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/moldenformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/moldenformat.cpp:35: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/istream:40, from /usr/include/c++/13.3.0/fstream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/moldenformat.cpp:27: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 52%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlpmdformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.o -MF CMakeFiles/lpmdformat.dir/lpmdformat.o.d -o CMakeFiles/lpmdformat.dir/lpmdformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lpmdformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/lpmdformat.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dshelxformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/shelxformat.dir/shelxformat.o -MF CMakeFiles/shelxformat.dir/shelxformat.o.d -o CMakeFiles/shelxformat.dir/shelxformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/shelxformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/shelxformat.cpp:18: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/math/matrix3x3.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/shelxformat.cpp:17: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dposformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/posformat.dir/posformat.o -MF CMakeFiles/posformat.dir/posformat.o.d -o CMakeFiles/posformat.dir/posformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/posformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/posformat.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 66%] Linking CXX shared module ../../libx32/pointcloudformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 66%] Linking CXX shared module ../../libx32/opendxformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 66%] Linking CXX shared module ../../libx32/moldenformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 67%] Built target pointcloudformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 67%] Built target opendxformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 67%] Built target moldenformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 66%] Linking CXX shared module ../../libx32/lpmdformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/lpmdformat.so CMakeFiles/lpmdformat.dir/lpmdformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 67%] Built target lpmdformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 58%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpcmodelformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.o -MF CMakeFiles/pcmodelformat.dir/pcmodelformat.o.d -o CMakeFiles/pcmodelformat.dir/pcmodelformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pcmodelformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pcmodelformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 67%] Linking CXX shared module ../../libx32/shelxformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 68%] Built target shelxformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 67%] Linking CXX shared module ../../libx32/posformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/posformat.so CMakeFiles/posformat.dir/posformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 68%] Built target posformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 68%] Linking CXX shared module ../../libx32/pcmodelformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 68%] Built target pcmodelformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 53%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdffformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mdffformat.dir/mdffformat.o -MF CMakeFiles/mdffformat.dir/mdffformat.o.d -o CMakeFiles/mdffformat.dir/mdffformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mdffformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mdffformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 60%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dstlformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/stlformat.dir/stlformat.o -MF CMakeFiles/stlformat.dir/stlformat.o.d -o CMakeFiles/stlformat.dir/stlformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/stlformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/stlformat.cpp:29: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/stlformat.cpp:28: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 69%] Linking CXX shared module ../../libx32/mdffformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdffformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/mdffformat.so CMakeFiles/mdffformat.dir/mdffformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 69%] Built target mdffformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 69%] Linking CXX shared module ../../libx32/stlformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/stlformat.so CMakeFiles/stlformat.dir/stlformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 69%] Built target stlformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 63%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dviewmolformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.o -MF CMakeFiles/viewmolformat.dir/viewmolformat.o.d -o CMakeFiles/viewmolformat.dir/viewmolformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/viewmolformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/viewmolformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 70%] Linking CXX shared module ../../libx32/viewmolformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 70%] Built target viewmolformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 62%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dunichemformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/unichemformat.dir/unichemformat.o -MF CMakeFiles/unichemformat.dir/unichemformat.o.d -o CMakeFiles/unichemformat.dir/unichemformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/unichemformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/unichemformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 63%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -Dxedformat_EXPORTS -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/xedformat.dir/xedformat.o -MF CMakeFiles/xedformat.dir/xedformat.o.d -o CMakeFiles/xedformat.dir/xedformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xedformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xedformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 54%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmcifformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.o -MF CMakeFiles/mmcifformat.dir/mmcifformat.o.d -o CMakeFiles/mmcifformat.dir/mmcifformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mmcifformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/mmcifformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 62%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtinkerformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.o -MF CMakeFiles/tinkerformat.dir/tinkerformat.o.d -o CMakeFiles/tinkerformat.dir/tinkerformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/tinkerformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/tinkerformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 71%] Linking CXX shared module ../../libx32/unichemformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Built target unichemformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpqrformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pqrformat.dir/pqrformat.o -MF CMakeFiles/pqrformat.dir/pqrformat.o.d -o CMakeFiles/pqrformat.dir/pqrformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pqrformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pqrformat.cpp:16: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pqrformat.cpp:501:58: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 501 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13.3.0/cstdio:42, from /usr/include/c++/13.3.0/ext/string_conversions.h:45, from /usr/include/c++/13.3.0/bits/basic_string.h:4109, from /usr/include/c++/13.3.0/string:54, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:35: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pqrformat.cpp:501:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pqrformat.cpp:518:66: warning: '%-3s' directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=] 518 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^~~~ ~~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pqrformat.cpp:518:29: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 17 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/chemdoodlejsonformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Linking CXX shared module ../../libx32/mmcifformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 71%] Linking CXX shared module ../../libx32/xedformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/xedformat.so CMakeFiles/xedformat.dir/xedformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Built target xedformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Built target mmcifformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 46%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcifformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cifformat.dir/cifformat.o -MF CMakeFiles/cifformat.dir/cifformat.o.d -o CMakeFiles/cifformat.dir/cifformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/cifformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/cifformat.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/babel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 60%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dthermoformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/thermoformat.dir/thermoformat.o -MF CMakeFiles/thermoformat.dir/thermoformat.o.d -o CMakeFiles/thermoformat.dir/thermoformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/thermoformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/thermoformat.cpp:23: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/thermoformat.cpp:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Linking CXX shared module ../../libx32/tinkerformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Built target tinkerformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Linking CXX shared module ../../libx32/pqrformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Built target pqrformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Linking CXX shared module ../../libx32/cifformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/cifformat.so CMakeFiles/cifformat.dir/cifformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Built target cifformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Linking CXX shared module ../../libx32/thermoformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Built target thermoformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 64%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -Dyasaraformat_EXPORTS -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.o -MF CMakeFiles/yasaraformat.dir/yasaraformat.o.d -o CMakeFiles/yasaraformat.dir/yasaraformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/yasaraformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/yasaraformat.cpp:34: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/yasaraformat.cpp:562:36: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] 562 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } | ^ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13.3.0/cstdio:42, from /usr/include/c++/13.3.0/ext/string_conversions.h:45, from /usr/include/c++/13.3.0/bits/basic_string.h:4109, from /usr/include/c++/13.3.0/string:54, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:35: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/yasaraformat.cpp:562:15: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 12 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 65%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drxnformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/rxnformat.dir/rxnformat.o -MF CMakeFiles/rxnformat.dir/rxnformat.o.d -o CMakeFiles/rxnformat.dir/rxnformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/rxnformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/rxnformat.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/rxnformat.cpp:17: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 32%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.o -MF CMakeFiles/plugin_charges.dir/charges/eqeq.o.d -o CMakeFiles/plugin_charges.dir/charges/eqeq.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/eqeq.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/chargemodel.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/eqeq.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/charges/eqeq.cpp:21: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/dlhandler.h:24, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:23: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 73%] Linking CXX shared module ../../libx32/yasaraformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 73%] Built target yasaraformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 73%] Linking CXX shared module ../../libx32/rxnformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obchiral.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/build make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 73%] Built target rxnformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obconformer.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 63%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -Dxyzformat_EXPORTS -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/xyzformat.dir/xyzformat.o -MF CMakeFiles/xyzformat.dir/xyzformat.o.d -o CMakeFiles/xyzformat.dir/xyzformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xyzformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xyzformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 69%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.o -MF CMakeFiles/png2format.dir/__/depict/cairopainter.o.d -o CMakeFiles/png2format.dir/__/depict/cairopainter.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/depict/cairopainter.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obenergy.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 74%] Linking CXX shared module ../../libx32/xyzformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 74%] Built target xyzformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f 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-DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/pubchem.o -MF CMakeFiles/pubchem.dir/xml/pubchem.o.d -o CMakeFiles/pubchem.dir/xml/pubchem.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/pubchem.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/pubchem.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.o -MF CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.o.d -o CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/json/customwriter.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obgen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 68%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -Dxmlformat_EXPORTS -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.o -MF CMakeFiles/xmlformat.dir/xml/xmlformat.o.d -o CMakeFiles/xmlformat.dir/xml/xmlformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xmlformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xmlformat.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obminimize.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 68%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o -MF CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o.d -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/cdxmlformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/cdxmlformat.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 60%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmileyformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/smileyformat.dir/smileyformat.o -MF CMakeFiles/smileyformat.dir/smileyformat.o.d -o CMakeFiles/smileyformat.dir/smileyformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/smileyformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/smileyformat.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 76%] Linking CXX shared module ../../libx32/smileyformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 76%] Built target smileyformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obprobe.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 67%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/png2format.dir/png2format.o -MF CMakeFiles/png2format.dir/png2format.o.d -o CMakeFiles/png2format.dir/png2format.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/png2format.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/png2format.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 73%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/customwriter.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pubchemjsonformat.dir/json/customwriter.o -MF CMakeFiles/pubchemjsonformat.dir/json/customwriter.o.d -o CMakeFiles/pubchemjsonformat.dir/json/customwriter.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/json/customwriter.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obprop.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Building CXX object tools/CMakeFiles/babel.dir/babel.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/babel.dir/babel.o -MF CMakeFiles/babel.dir/babel.o.d -o CMakeFiles/babel.dir/babel.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/babel.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/babel.cpp:42: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/babel.cpp:28: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 73%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obabel.dir/obabel.o -MF CMakeFiles/obabel.dir/obabel.o.d -o CMakeFiles/obabel.dir/obabel.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obabel.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obabel.cpp:43: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obabel.cpp:28: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 77%] Linking CXX executable ../bin/obabel cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obabel.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obabel.dir/obabel.o -o ../bin/obabel -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 76%] Linking CXX shared module ../../libx32/png2format.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/png2format.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/png2format.so CMakeFiles/png2format.dir/png2format.o CMakeFiles/png2format.dir/__/depict/cairopainter.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 70%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.o -MF CMakeFiles/cmlreactformat.dir/xml/xml.o.d -o CMakeFiles/cmlreactformat.dir/xml/xml.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xml.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xml.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 77%] Built target obabel make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 77%] Built target png2format make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 66%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drsmiformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.o -MF CMakeFiles/rsmiformat.dir/rsmiformat.o.d -o CMakeFiles/rsmiformat.dir/rsmiformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/rsmiformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/rsmiformat.cpp:20: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/rsmiformat.cpp:17: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obrotate.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obsym.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/build /usr/bin/make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 77%] Linking CXX executable ../bin/babel cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/babel.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section 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Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obtautomer.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 77%] Linking CXX shared module ../../libx32/rsmiformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rsmiformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/rsmiformat.so CMakeFiles/rsmiformat.dir/rsmiformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 78%] Built target rsmiformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' 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/usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cmlformat.dir/xml/xml.o -MF CMakeFiles/cmlformat.dir/xml/xml.o.d -o CMakeFiles/cmlformat.dir/xml/xml.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xml.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xml.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obdistgen.dir/build.make tools/CMakeFiles/obdistgen.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obdistgen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obdistgen.dir/build.make tools/CMakeFiles/obdistgen.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 71%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -Dxmlformat_EXPORTS -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xml.o -MF CMakeFiles/xmlformat.dir/xml/xml.o.d -o CMakeFiles/xmlformat.dir/xml/xml.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xml.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xml.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 73%] Building CXX object tools/CMakeFiles/obchiral.dir/obchiral.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obchiral.dir/obchiral.o -MF CMakeFiles/obchiral.dir/obchiral.o.d -o CMakeFiles/obchiral.dir/obchiral.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obchiral.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obchiral.cpp:27: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obchiral.cpp:26: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 78%] Linking CXX shared module ../../libx32/xmlformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.o CMakeFiles/xmlformat.dir/xml/xml.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 78%] Built target xmlformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obrms.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 73%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obconformer.dir/obconformer.o -MF CMakeFiles/obconformer.dir/obconformer.o.d -o CMakeFiles/obconformer.dir/obconformer.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obconformer.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obconformer.cpp:26: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obconformer.cpp:25: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 59%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbqtformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.o -MF CMakeFiles/pdbqtformat.dir/pdbqtformat.o.d -o CMakeFiles/pdbqtformat.dir/pdbqtformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbqtformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbqtformat.cpp:24: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbqtformat.cpp:334:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 334 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13.3.0/cstdio:42, from /usr/include/c++/13.3.0/ext/string_conversions.h:45, from /usr/include/c++/13.3.0/bits/basic_string.h:4109, from /usr/include/c++/13.3.0/string:54, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:35: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbqtformat.cpp:334:15: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)': /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbqtformat.cpp:351:60: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 351 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)' at /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/pdbqtformat.cpp:351:19: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 78%] Linking CXX executable ../bin/obchiral cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obchiral.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obchiral.dir/obchiral.o -o ../bin/obchiral -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 79%] Built target obchiral make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 79%] Linking CXX executable ../bin/obconformer cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obconformer.dir/obconformer.o -o ../bin/obconformer -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 79%] Built target obconformer make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/CMakeFiles/obgrep.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 78%] Linking CXX shared module ../../libx32/pdbqtformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 80%] Built target pdbqtformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/GUI /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/GUI /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 74%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obenergy.dir/obenergy.o -MF CMakeFiles/obenergy.dir/obenergy.o.d -o CMakeFiles/obenergy.dir/obenergy.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obenergy.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obenergy.cpp:27: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/base.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obenergy.cpp:25: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 80%] Linking CXX executable ../bin/obenergy cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obenergy.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obenergy.dir/obenergy.o -o ../bin/obenergy -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 80%] Built target obenergy make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 65%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawcdx_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o -MF CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o.d -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chemdrawcdx.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chemdrawcdx.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:37: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/CMakeFiles/test_runner.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 76%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obminimize.dir/obminimize.o -MF CMakeFiles/obminimize.dir/obminimize.o.d -o CMakeFiles/obminimize.dir/obminimize.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obminimize.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obminimize.cpp:28: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/base.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obminimize.cpp:26: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 80%] Linking CXX shared module ../../libx32/chemdrawcdx.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/chemdrawcdx.so CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 80%] Built target chemdrawcdx make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 80%] Linking CXX executable ../bin/obminimize cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obminimize.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obminimize.dir/obminimize.o -o ../bin/obminimize -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -DTESTDATADIR="\"/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/files/\"" -DFORMATDIR="\"/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32//\"" -DTESTDIR=/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test -MD -MT test/CMakeFiles/test_runner.dir/test_runner.o -MF CMakeFiles/test_runner.dir/test_runner.o.d -o CMakeFiles/test_runner.dir/test_runner.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/test_runner.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 80%] Built target obminimize make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 76%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obgen.dir/obgen.o -MF CMakeFiles/obgen.dir/obgen.o.d -o CMakeFiles/obgen.dir/obgen.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obgen.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obgen.cpp:31: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/base.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obgen.cpp:29: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 78%] Building CXX object tools/CMakeFiles/obsym.dir/obsym.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obsym.dir/obsym.o -MF CMakeFiles/obsym.dir/obsym.o.d -o CMakeFiles/obsym.dir/obsym.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obsym.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obsym.cpp:29: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obsym.cpp:28: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 77%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obprop.dir/obprop.o -MF CMakeFiles/obprop.dir/obprop.o.d -o CMakeFiles/obprop.dir/obprop.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obprop.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/descriptor.h:27, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obprop.cpp:29: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obprop.cpp:28: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 76%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obprobe.dir/obprobe.o -MF CMakeFiles/obprobe.dir/obprobe.o.d -o CMakeFiles/obprobe.dir/obprobe.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obprobe.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obprobe.cpp:30: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/base.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obprobe.cpp:28: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 78%] Building CXX object tools/CMakeFiles/obtautomer.dir/obtautomer.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obtautomer.dir/obtautomer.o -MF CMakeFiles/obtautomer.dir/obtautomer.o.d -o CMakeFiles/obtautomer.dir/obtautomer.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obtautomer.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obtautomer.cpp:26: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obtautomer.cpp:25: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 75%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obfit.dir/obfit.o -MF CMakeFiles/obfit.dir/obfit.o.d -o CMakeFiles/obfit.dir/obfit.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obfit.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obfit.cpp:37: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obfit.cpp:35: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Linking CXX executable ../bin/obgen cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgen.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obgen.dir/obgen.o -o ../bin/obgen -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Built target obgen make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1 /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/CMakeFiles/roundtrip.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/build make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Linking CXX executable ../bin/obsym cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obsym.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obsym.dir/obsym.o -o ../bin/obsym -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 76%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/xml.o -MF CMakeFiles/pubchem.dir/xml/xml.o.d -o CMakeFiles/pubchem.dir/xml/xml.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xml.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xml.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Built target obsym make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Linking CXX executable ../bin/obprop cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obprop.dir/obprop.o -o ../bin/obprop -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Built target obprop make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Linking CXX executable ../bin/obtautomer cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obtautomer.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obtautomer.dir/obtautomer.o -o ../bin/obtautomer -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Linking CXX executable ../bin/obprobe cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprobe.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obprobe.dir/obprobe.o -o ../bin/obprobe -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Built target obtautomer make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f scripts/CMakeFiles/bindings_perl.dir/build.make scripts/CMakeFiles/bindings_perl.dir/depend make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Built target obprobe make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' /usr/bin/make -f scripts/CMakeFiles/bindings_ruby.dir/build.make scripts/CMakeFiles/bindings_ruby.dir/depend make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Linking CXX executable ../bin/obfit cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfit.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obfit.dir/obfit.o -o ../bin/obfit -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Built target obfit make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Linking CXX shared module ../../libx32/pubchem.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.o CMakeFiles/pubchem.dir/xml/xml.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 77%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obrotate.dir/obrotate.o -MF CMakeFiles/obrotate.dir/obrotate.o.d -o CMakeFiles/obrotate.dir/obrotate.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obrotate.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obrotate.cpp:42: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obrotate.cpp:38: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Built target pubchem make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 77%] Building CXX object tools/CMakeFiles/obrotamer.dir/obrotamer.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obrotamer.dir/obrotamer.o -MF CMakeFiles/obrotamer.dir/obrotamer.o.d -o CMakeFiles/obrotamer.dir/obrotamer.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obrotamer.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obrotamer.cpp:26: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obrotamer.cpp:25: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 78%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obthermo.dir/obthermo.o -MF CMakeFiles/obthermo.dir/obthermo.o.d -o CMakeFiles/obthermo.dir/obthermo.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obthermo.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obthermo.cpp:27: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/base.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obthermo.cpp:25: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Linking CXX executable ../bin/obrotate cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obrotate.dir/obrotate.o -o ../bin/obrotate -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 68%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o -MF CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o.d -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/cmlreactformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/cmlreactformat.cpp:17: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/cmlreactformat.cpp:15: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.o -MF CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.o.d -o CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/json/chemdoodlejsonformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obmolecformat.h:42, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/json/chemdoodlejsonformat.cpp:19: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/stl_tree.h:65, from /usr/include/c++/13.3.0/map:62, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/json/chemdoodlejsonformat.cpp:17: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 83%] Built target obrotate make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 82%] Linking CXX executable ../bin/obrotamer cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotamer.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obrotamer.dir/obrotamer.o -o ../bin/obrotamer -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 83%] Linking CXX executable ../bin/obthermo cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obthermo.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obthermo.dir/obthermo.o -o ../bin/obthermo -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 83%] Built target obrotamer make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 83%] Built target obthermo make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 76%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.o -MF CMakeFiles/cdxmlformat.dir/xml/xml.o.d -o CMakeFiles/cdxmlformat.dir/xml/xml.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xml.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/xml/xml.cpp:15: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/xml.h:21: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 83%] Linking CXX shared module ../../libx32/cmlreactformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o CMakeFiles/cmlreactformat.dir/xml/xml.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 84%] Built target cmlreactformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 84%] Linking CXX shared module ../../libx32/cdxmlformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o CMakeFiles/cdxmlformat.dir/xml/xml.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 84%] Built target cdxmlformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 72%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.o -MF CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.o.d -o CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/json/jsoncpp.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -DTESTDATADIR="\"/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/files/\"" -DFORMATDIR="\"/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32//\"" -DTESTDIR=/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test -MD -MT test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -MF CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o.d -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/getinchi.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 78%] Building CXX object tools/CMakeFiles/obrms.dir/obrms.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obrms.dir/obrms.o -MF CMakeFiles/obrms.dir/obrms.o.d -o CMakeFiles/obrms.dir/obrms.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obrms.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obrms.cpp:32: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obrms.cpp:30: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 78%] Building CXX object tools/CMakeFiles/obdistgen.dir/obdistgen.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obdistgen.dir/obdistgen.o -MF CMakeFiles/obdistgen.dir/obdistgen.o.d -o CMakeFiles/obdistgen.dir/obdistgen.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obdistgen.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obdistgen.cpp:29: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/base.h:25, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obdistgen.cpp:27: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 84%] Linking CXX shared module ../../libx32/chemdoodlejsonformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdoodlejsonformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/chemdoodlejsonformat.so CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.o CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.o CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 84%] Built target chemdoodlejsonformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 84%] Linking CXX executable ../bin/obdistgen cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obdistgen.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obdistgen.dir/obdistgen.o -o ../bin/obdistgen -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 84%] Linking CXX executable ../bin/obrms cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrms.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obrms.dir/obrms.o -o ../bin/obrms -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 84%] Built target obdistgen make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 84%] Built target obrms make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 65%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemkinformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.o -MF CMakeFiles/chemkinformat.dir/chemkinformat.o.d -o CMakeFiles/chemkinformat.dir/chemkinformat.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chemkinformat.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chemkinformat.cpp:27: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/chemkinformat.cpp:18: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 86%] Linking CXX shared module ../../libx32/chemkinformat.so cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -fPIC -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -shared -o ../../libx32/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.o -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: -lm -ldl -lz -lcairo -linchi -lm ../../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 73%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/jsoncpp.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats && /usr/bin/x86_64-pld-linux-gnux32-g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -fPIC -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT src/formats/CMakeFiles/pubchemjsonformat.dir/json/jsoncpp.o -MF CMakeFiles/pubchemjsonformat.dir/json/jsoncpp.o.d -o CMakeFiles/pubchemjsonformat.dir/json/jsoncpp.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/src/formats/json/jsoncpp.cpp make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 86%] Built target chemkinformat make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 80%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -DTESTDATADIR="\"/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/files/\"" -DFORMATDIR="\"/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32//\"" -DTESTDIR=/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test -MD -MT test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o -MF CMakeFiles/test_inchiwrite.dir/inchiwrite.o.d -o CMakeFiles/test_inchiwrite.dir/inchiwrite.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/inchiwrite.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/inchiwrite.cpp:30: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/inchiwrite.cpp:25: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 80%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obgrep.dir/obgrep.o -MF CMakeFiles/obgrep.dir/obgrep.o.d -o CMakeFiles/obgrep.dir/obgrep.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obgrep.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obgrep.cpp:28: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obgrep.cpp:27: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 86%] Linking CXX executable ../bin/test_inchiwrite cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/test_inchiwrite.dir/inchiwrite.o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -o ../bin/test_inchiwrite -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32 ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 86%] Built target test_inchiwrite make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -DTESTDATADIR="\"/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/files/\"" -DFORMATDIR="\"/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32//\"" -DTESTDIR=/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test -MD -MT test/CMakeFiles/roundtrip.dir/roundtrip.o -MF CMakeFiles/roundtrip.dir/roundtrip.o.d -o CMakeFiles/roundtrip.dir/roundtrip.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/roundtrip.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/roundtrip.cpp:28: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/bits/refwrap.h:39, from /usr/include/c++/13.3.0/vector:68, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/mol.h:34, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/roundtrip.cpp:26: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 86%] Linking CXX executable ../bin/obgrep cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obgrep.dir/obgrep.o -o ../bin/obgrep -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 87%] Built target obgrep make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 87%] Linking CXX executable ../bin/roundtrip cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/roundtrip.dir/roundtrip.o -o ../bin/roundtrip -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 87%] Built target roundtrip make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 79%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -MD -MT tools/CMakeFiles/obspectrophore.dir/obspectrophore.o -MF CMakeFiles/obspectrophore.dir/obspectrophore.o.d -o CMakeFiles/obspectrophore.dir/obspectrophore.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obspectrophore.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obspectrophore.cpp:10: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools/obspectrophore.cpp:1: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -DOB_MODULE_PATH="\"libx32/openbabel/2.4.1\"" -DTESTDATADIR="\"/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/files/\"" -DFORMATDIR="\"/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32//\"" -DTESTDIR=/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test -MD -MT test/CMakeFiles/test_runner.dir/canonconsistenttest.o -MF CMakeFiles/test_runner.dir/canonconsistenttest.o.d -o CMakeFiles/test_runner.dir/canonconsistenttest.o -c /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/canonconsistenttest.cpp In file included from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/format.h:22, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/obconversion.h:37, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/obtest.h:8, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/canonconsistenttest.cpp:1: /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13.3.0/string:49, from /usr/include/c++/13.3.0/bits/locale_classes.h:40, from /usr/include/c++/13.3.0/bits/ios_base.h:41, from /usr/include/c++/13.3.0/ios:44, from /usr/include/c++/13.3.0/ostream:40, from /usr/include/c++/13.3.0/iostream:41, from /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test/obtest.h:4: /usr/include/c++/13.3.0/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 87%] Linking CXX executable ../bin/obspectrophore cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1 /usr/bin/x86_64-pld-linux-gnux32-g++ -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mtune=generic -march=x86-64 -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -DNDEBUG -DQT_NO_DEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -rdynamic CMakeFiles/obspectrophore.dir/obspectrophore.o -o ../bin/obspectrophore -Wl,-rpath,/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/libx32: ../libx32/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[1]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 87%] Built target obspectrophore make[1]: Leaving directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' make[2]: Entering directory '/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1' [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.o cd /tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test && /usr/bin/x86_64-pld-linux-gnux32-g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -DwxDEBUG_LEVEL=0 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/include -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/data -I/usr/include/eigen3 -I/tmp/B.jdjlr4d2/BUILD/openbabel-openbabel-2-4-1/test -isystem /usr/libx32/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -pthread -O2 -fwrapv -pipe -Wformat -Werror=format-security -gdwarf-4 -fno-debug-types-section -fvar-tracking-assignments -g2 -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector-strong --param=ssp-buffer-size=4 -Werror=trampolines -fPIC -mt